Name: Streptococcus gordonii SK3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14790

Type strain:

Species: Streptococcus gordonii

Strain Designation: SK3

Culture col. no.: DSM 6777, ATCC 10558, CIP 105258, NCTC 7865

Strain history: <- ATCC <- J.M. Sherman

Other strains from Streptococcus gordonii

Section

Streptococcus gordonii SK3 is a microaerophile, mesophilic bacterium that was isolated from subacute bacterial endocarditis, human.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Bacilli
	Order	Lactobacillales
	Family	Streptococcaceae
	Genus	Streptococcus
	Species	Streptococcus gordonii
	Full Scientific Name (PNU)	Streptococcus gordonii Kilian et al. 1989

Information on morphological and physiological properties Morphology

[Ref.: #2811]	Type of hemolysis	alpha
[Ref.: #2811]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693), microaerophilic

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Culture medium growth

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Culture medium link

Medium recipe at BacMedia

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Culture medium composition

expand / minimize

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

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Culture medium growth

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Culture medium link

Medium recipe at BacMedia

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Culture medium composition

expand / minimize

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Culture medium

MEDIUM 29- Brain heart agar

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Culture medium growth

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2811]			growth	37 °C
[Ref.: #42091]			growth	37 °C

[Ref.: #2811]	Temperature range	mesophilic
[Ref.: #42091]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

microaerophile

[Ref.: #2811]	Murein short key	A11.05
[Ref.: #2811]	Murein types	A3alpha L-Lys-L-Ala₂

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #2811]		catalase	-	1.11.1.6
[Ref.: #2811]		cytochrome-c oxidase	-	1.9.3.1

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #2811]	7990	-	+	+	-	+/-	+	-	-	-	+	+	-	+	-	-	-	-	+	+	-	-	+	-	-	-	+	-	-	+	+	+	-
[Ref.: #2811]	7388	-	+	+	-	-	+	-	-	-	+	+	-	+	-	-	-	-	+	+	-	-	+	-	-	-	+	-	-	+	+	+	-
[Ref.: #2811]	7387	-	+	+	-	-	+	-	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	+	-	-	+	+	+/-	-
[Ref.: #2811]	7386	-	+	-	-	-	-	+	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	+	-	-
[Ref.: #2811]	7385	-	+	-	-	-	+	-	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	+/-	-	-
[Ref.: #2811]	7384	-	+	+	-	-	+	+/-	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

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Sample type/isolated from

subacute bacterial endocarditis, human

Isolation sources categories

#Infection	#Disease	-
#Host	#Microbial	#Bacteria
#Host Body-Site	#Organ	#Heart

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptococcus gordonii DNA, 16S-23S rRNA intergenic spacer region	AB051019	246	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii 16S ribosomal RNA gene, complete sequence	AF003931	1512	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain ATCC 10558 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY353081	246	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain ATCC 10558 16S small subunit ribosomal RNA gene, partial sequence	AY485606	1479	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain ATCC 10558 16S ribosomal RNA gene, partial sequence	EU156758	1329	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain ATCC 10558 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	JN181383	511	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain KCTC 3286 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	HM241933	458	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii 16S rRNA gene	D38483	1413	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain NCTC 7865 16S-23S ribosomal RNA intergenic spacer, partial sequence	EU860346	323	ENA	1302 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptococcus gordonii NCTC7865	GCA_900475015	complete	GenBank	1302 tax ID	*
[Ref.: #66792]	Streptococcus gordonii KCOM 1506 (= ChDC B679)	GCA_001281105	complete	GenBank	1302 tax ID	*
[Ref.: #66792]	Streptococcus gordonii FDAARGOS_257	GCA_002073435	complete	GenBank	1302 tax ID	*
[Ref.: #66792]	Streptococcus gordonii FDAARGOS_683	GCA_009730535	complete	GenBank	1302 tax ID	*
[Ref.: #66792]	Streptococcus gordonii IE35	GCA_000970665	complete	GenBank	1302 tax ID	*
[Ref.: #66792]	Streptococcus gordonii FDAARGOS_371	GCA_002386285	complete	GenBank	1302 tax ID	*

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GC-content

41.0 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

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Culture collection no.

DSM 6777, ATCC 10558, CIP 105258, NCTC 7865

[Ref.: #20218]

Associated Passport(s) in StrainInfo

155570, 40599, 155569, 40602

References

#2811

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6777

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42091 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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