Name: Streptococcus gordonii SK3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14790

Type strain:

Species: Streptococcus gordonii

Strain Designation: SK3

Culture col. no.: DSM 6777, ATCC 10558, CIP 105258, NCTC 7865, JCM 12995, CCUG 25608, CCUG 33482, CCUG 35801, LMG 14518

Strain history: CCUG 33482 <-- NCTC 7865 <-- ATCC 10558 <-- J. M. Sherman.

NCBI tax ID(s): 1302 (species)

Other strains from Streptococcus gordonii

Section

Streptococcus gordonii SK3 is a microaerophile, mesophilic bacterium that was isolated from subacute bacterial endocarditis, human.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus gordonii**
	Full Scientific Name (PNU)	Streptococcus gordonii Kilian et al. 1989

Information on morphological and physiological properties Morphology

[Ref.: #2811]	Type of hemolysis	alpha
[Ref.: #2811]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2811]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #2811]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2811]

Culture medium composition

expand / minimize

[Ref.: #2811]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #2811]

Culture medium growth

[Ref.: #2811]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2811]

Culture medium composition

expand / minimize

[Ref.: #42091]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #42091]

Culture medium growth

[Ref.: #42091]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2811]	growth	37 °C
[Ref.: #42091]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #2811]	Temperature range	mesophilic
[Ref.: #42091]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2811]

Oxygen tolerance

microaerophile

[Ref.: #2811]	Murein short key	A11.05
[Ref.: #2811]	Murein types	A3alpha L-Lys-L-Ala₂

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	arginine ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	lactose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	maltose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	pullulan ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	raffinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	trehalose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68381]		acetoin ChEBI	* from API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68381]		acetoin ChEBI	-	* from API rID32STR

	Enzyme	Enzyme activity	EC number
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #68381]	arginine dihydrolase	-	3.5.3.6	* from API rID32STR
[Ref.: #68381]	beta-glucosidase	+	3.2.1.21	* from API rID32STR
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR
[Ref.: #2811]	catalase	-	1.11.1.6
[Ref.: #2811]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #2811]	10102	-	+	+	-	+/-	+	-	-	-	+	+	-	+	-	-	-	-	+	+	-	-	+	-	-	-	+	-	-	+	+	+	-
[Ref.: #2811]	9499	-	+	+	-	-	+	-	-	-	+	+	-	+	-	-	-	-	+	+	-	-	+	-	-	-	+	-	-	+	+	+	-
[Ref.: #2811]	9498	-	+	+	-	-	+	-	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	+	-	-	+	+	+/-	-
[Ref.: #2811]	9497	-	+	-	-	-	-	+	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	+	-	-
[Ref.: #2811]	9496	-	+	-	-	-	+	-	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	+/-	-	-
[Ref.: #2811]	9495	-	+	+	-	-	+	+/-	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2811]	Sample type/isolated from	subacute bacterial endocarditis, human

[Ref.: #67770]	Sample type/isolated from	Human subacute endocarditis
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Microbial	#Bacteria
#Host Body-Site	#Organ	#Heart

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC258133 (>99% sequence identity) for Streptococcus from Microbeatlas

Aquatic Samples	4744
Soil Samples	2729
Animal Samples	143458
Plant Samples	1045
Total Samples	151976

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2811]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptococcus gordonii DNA, 16S-23S rRNA intergenic spacer region	AB051019	246	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii 16S ribosomal RNA gene, complete sequence	AF003931	1512	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain ATCC 10558 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY353081	246	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain ATCC 10558 16S small subunit ribosomal RNA gene, partial sequence	AY485606	1479	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain ATCC 10558 16S ribosomal RNA gene, partial sequence	EU156758	1329	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain ATCC 10558 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	JN181383	511	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain KCTC 3286 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	HM241933	458	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii 16S rRNA gene	D38483	1413	ENA	1302 tax ID	*
[Ref.: #20218]	Streptococcus gordonii strain NCTC 7865 16S-23S ribosomal RNA intergenic spacer, partial sequence	EU860346	323	ENA	1302 tax ID	*
[Ref.: #67770]	Streptococcus gordonii gene for 16S ribosomal RNA, partial sequence, strain: JCM 12995	LC258133	1498	ENA	1302 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptococcus gordonii NCTC7865	GCA_900475015	complete	GenBank	1302 tax ID	*
[Ref.: #66792]	Streptococcus gordonii CCUG 33482	GCA_001553855	scaffold	GenBank	1302 tax ID	*
[Ref.: #66792]	Streptococcus gordonii ATCC 10558	GCA_001469295	scaffold	GenBank	1302 tax ID	*
[Ref.: #66792]	Streptococcus gordonii strain ATCC 10558	1302.19	wgs	PATRIC	1302 tax ID	*
[Ref.: #66792]	Streptococcus gordonii strain CCUG 33482	1302.20	wgs	PATRIC	1302 tax ID	*
[Ref.: #66792]	Streptococcus gordonii strain FDAARGOS 1454 strain Not applicable	1302.425	complete	PATRIC	1302 tax ID	*

[Ref.: #2811]	GC-content	41.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	41 mol%

Availability in culture collections External links

[Ref.: #2811]

Culture collection no.

DSM 6777, ATCC 10558, CIP 105258, NCTC 7865, JCM 12995, CCUG 25608, CCUG 33482, CCUG 35801, LMG 14518

[Ref.: #20218]

Associated Passport(s) in StrainInfo

155570, 40599, 155569, 40602

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Identification of the streptococcal competence-pheromone receptor.	Havarstein LS, Gaustad P, Nes IF, Morrison DA	Mol Microbiol	10.1046/j.1365-2958.1996.521416.x	1996	*
Pathogenicity	Anaerobic killing of oral streptococci by reduced, transition metal cations.	Dunning JC, Ma Y, Marquis RE	Appl Environ Microbiol	10.1128/AEM.64.1.27-33.1998	1998	*
Metabolism	Turning on and turning off the arginine deiminase system in oral streptococci.	Curran TM, Ma Y, Rutherford GC, Marquis RE	Can J Microbiol	10.1139/cjm-44-11-1078	1998	*
Pathogenicity	Invasion of human aortic endothelial cells by oral viridans group streptococci and induction of inflammatory cytokine production.	Nagata E, de Toledo A, Oho T	Mol Oral Microbiol	10.1111/j.2041-1014.2010.00597.x	2010	*
Pathogenicity	In vitro evaluation of surface roughness, adhesion of periodontal ligament fibroblasts, and Streptococcus gordonii following root instrumentation with Gracey curettes and subsequent polishing with diamond-coated curettes.	Eick S, Bender P, Flury S, Lussi A, Sculean A	Clin Oral Investig	10.1007/s00784-012-0719-z	2012	*
Pathogenicity	Systematic screening of plant extracts from the Brazilian Pantanal with antimicrobial activity against bacteria with cariogenic relevance.	Brighenti FL, Salvador MJ, Delbem AC, Delbem AC, Oliveira MA, Soares CP, Freitas LS, Koga-Ito CY	Caries Res	10.1159/000357225	2014	*
Pathogenicity	Intensity and duration of in-vitro antibacterial activity of different adhesives used in orthodontics.	Passariello C, Sannino G, Petti S, Gigola P	Eur J Oral Sci	10.1111/eos.12120	2014	*
Genetics	Draft Genome Sequence of Type Strain Streptococcus gordonii ATCC 10558.	Rasmussen LH, Dargis R, Christensen JJ, Skovgaard O, Nielsen XC	Genome Announc	10.1128/genomeA.01745-15	2016	*
Genetics	Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.	Salva-Serra F, Jakobsson HE, Thorell K, Gonzales-Siles L, Hallback ET, Jaen-Luchoro D, Boulund F, Sikora P, Karlsson R, Svensson L, Bennasar A, Engstrand L, Kristiansson E, Moore ER	Genome Announc	10.1128/genomeA.00175-16	2016	*
Phylogeny	Bacterial invasion into radicular dentine-an in vitro study.	Stauffacher S, Lussi A, Nietzsche S, Neuhaus KW, Eick S	Clin Oral Investig	10.1007/s00784-016-1960-7	2016	*
Pathogenicity	Antimicrobial Activity of a Colloidal AgNP Suspension Demonstrated In Vitro against Monoculture Biofilms: Toward a Novel Tooth Disinfectant for Treating Dental Caries.	Schwass DR, Lyons KM, Love R, Tompkins GR, Meledandri CJ	Adv Dent Res	10.1177/0022034517736495	2018	*
Metabolism	Aciduricity and acid tolerance mechanisms of Streptococcus anginosus.	Sasaki M, Kodama Y, Shimoyama Y, Ishikawa T, Kimura S	J Gen Appl Microbiol	10.2323/jgam.2017.11.005	2018	*

References

#2811

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6777

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42091 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68381

Automatically annotated from API rID32STR .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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