Burkholderia cenocepacia (CCUG 34078, NCTC 13010, LMG 12614)

Name: Burkholderia cenocepacia (CCUG 34078, NCTC 13010, LMG 12614)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 147719

Type strain

Culture col. no. CCUG 34078 NCTC 13010 LMG 12614

NCBI tax ID(s) 95486

Special Collections CCUG

Links

Burkholderia cenocepacia CCUG 34078 is a prokaryote that was isolated from Human lung,cystic fibrosis.

genome sequence

Name and taxonomic classification

SI-ID 7663

LMG 12614,NCTC 13010,CCUG 34078

@ref 20215

Last LPSN update 2025-12-16 10:05:24

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Burkholderia

Species Burkholderia cenocepacia

Full scientific name Burkholderia cenocepacia Vandamme et al. 2003

BacDive ID	Other strains from **Burkholderia cenocepacia** (60)	Type strain
1952	B. cenocepacia CF5610, J2315, CIP 108255, DSM 16553, ATCC ... (type strain)
141302	B. cenocepacia CCUG 788, ATCC 25610, LMG 6986
147328	B. cenocepacia CCUG 33378, LMG 16235
147720	B. cenocepacia CCUG 34079, NCTC 13008, LMG 12615
147721	B. cenocepacia CCUG 34081, LMG 13011
147749	B. cenocepacia CCUG 34142
148729	B. cenocepacia CCUG 35866
148810	B. cenocepacia CCUG 35968, LMG R-922
149014	B. cenocepacia CCUG 36725
149234	B. cenocepacia CCUG 37311, LMG R1185
149293	B. cenocepacia CCUG 37432
149652	B. cenocepacia CCUG 38121
150090	B. cenocepacia CCUG 38974
150324	B. cenocepacia CCUG 39663
150458	B. cenocepacia CCUG 39988
150593	B. cenocepacia CCUG 41697
150599	B. cenocepacia CCUG 41711
150723	B. cenocepacia CCUG 42057
150771	B. cenocepacia CCUG 42262
150982	B. cenocepacia CCUG 42934
151208	B. cenocepacia CCUG 43471
151810	B. cenocepacia CCUG 44959
151842	B. cenocepacia CCUG 45036
151843	B. cenocepacia CCUG 45037
151947	B. cenocepacia CCUG 45301
152326	B. cenocepacia CCUG 46446
152337	B. cenocepacia CCUG 46467
152399	B. cenocepacia CCUG 46672
152403	B. cenocepacia CCUG 46686
153538	B. cenocepacia CCUG 50116
153539	B. cenocepacia CCUG 50121
153540	B. cenocepacia CCUG 50126
153541	B. cenocepacia CCUG 50127
153542	B. cenocepacia CCUG 50130
153544	B. cenocepacia CCUG 50133
153545	B. cenocepacia CCUG 50137
153548	B. cenocepacia CCUG 50142
153549	B. cenocepacia CCUG 50143
153635	B. cenocepacia CCUG 50452
153753	B. cenocepacia CCUG 50863
154322	B. cenocepacia CCUG 53080
154435	B. cenocepacia CCUG 53615
154635	B. cenocepacia CCUG 54660
154675	B. cenocepacia CCUG 54812
154676	B. cenocepacia CCUG 54817
154701	B. cenocepacia CCUG 54883, BCC 0231, CEP 0868, LMG 21461
154702	B. cenocepacia CCUG 54884, LMG 19230
155267	B. cenocepacia CCUG 57141
155442	B. cenocepacia CCUG 57771 B
155694	B. cenocepacia CCUG 59017
156062	B. cenocepacia CCUG 60245
156307	B. cenocepacia CCUG 61115
156327	B. cenocepacia CCUG 61179
156329	B. cenocepacia CCUG 61184
156330	B. cenocepacia CCUG 61185
156332	B. cenocepacia CCUG 61191
156401	B. cenocepacia CCUG 61583
156514	B. cenocepacia CCUG 62286
156955	B. cenocepacia CCUG 67370 Q
156973	B. cenocepacia CCUG 67839 Q

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97
125439	negative	94.2

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.289
125439	aerobe	96.9

Spore formation

@ref	Spore formation	Confidence
125439		94.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

51922

Fatty acid	Percentage	ECL
C16:1 ω7c	31.6	15.819
C16:0	23	16
C18:1 ω7c /12t/9t	21.6	17.824
C14:0 3OH/C16:1 ISO I	6.2	15.485
C14:0	5.5	14
C16:0 3OH	3.9	17.52
C17:0 CYCLO	2.7	16.888
C18:0	1.6	18
C16:1 2OH	1.4	17.047
C16:0 2OH	0.8	17.233
C18:1 2OH	0.6	19.088
C16:1 ω5c	0.5	15.908
C18:2 ω6,9c/C18:0 ANTE	0.4	17.724
C19:0 CYCLO ω8c	0.4	18.9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
51922	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
51922	+	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Lung
#Infection	#Disease	#Cystic fibrosis
#Infection	#Patient	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
51922	Human lung,cystic fibrosis	United Kingdom	GBR	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	43781_C01 assembly for Burkholderia cenocepacia NCTC13010	contig	GCA_900446165	95486.371	95486	74.47

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Burkholderia cenocepacia NCTC13010
NCBI: GCA_900446165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.90	no
125439	motility	BacteriaNetⓘ	yes	75.40	no
125439	gram_stain	BacteriaNetⓘ	negative	94.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	96.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia cenocepacia strain NCTC13010
PATRIC: 95486.371

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	no
125438	anaerobic	anaerobicⓘ	no	96.65	no
125438	aerobic	aerobicⓘ	yes	91.29	no
125438	spore-forming	spore-formingⓘ	no	85.83	no
125438	thermophilic	thermophileⓘ	no	98.00	no
125438	flagellated	motile2+ⓘ	yes	83.34	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Burkholderia cenocepacia lipopolysaccharide, lipid A, and proinflammatory activity.	De Soyza A, Ellis CD, Khan CM, Corris PA, Demarco de Hormaeche R	Am J Respir Crit Care Med	10.1164/rccm.200304-592OC	2004

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#51922	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34078
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Burkholderia cenocepacia (CCUG 34078, NCTC 13010, LMG 12614)

Name and taxonomic classification