Campylobacter fetus subsp. venerealis CCUG 33872 is a bacterium of the family Campylobacteraceae.
genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Epsilonproteobacteria |
| Order Campylobacterales |
| Family Campylobacteraceae |
| Genus Campylobacter |
| Species Campylobacter fetus subsp. venerealis |
| Full scientific name Campylobacter fetus subsp. venerealis (Florent 1959) Véron and Chatelain 1973 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM169964v1 assembly for Campylobacter fetus subsp. venerealis CCUG 33872 | contig | 1273276 | 54.62 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | anaerobe | 70.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.90 | no |
| 125439 | motility | BacteriaNetⓘ | no | 65.00 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 98.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.46 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 76.34 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 94.86 | no |
| 125438 | aerobic | aerobicⓘ | no | 80.55 | no |
| 125438 | thermophilic | thermophileⓘ | no | 88.99 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 62.02 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation. | Ong CT, Blackall PJ, Boe-Hansen GB, deWet S, Hayes BJ, Indjein L, Korolik V, Minchin C, Nguyen LT, Nordin Y, Siddle H, Turni C, Venus B, Westman ME, Zhang Z, Tabor AE. | Front Microbiol | 10.3389/fmicb.2024.1452564 | 2024 | |
| Genetics | Phylogenomic analysis for Campylobacter fetus ocurring in Argentina. | Farace PD, Irazoqui JM, Morsella CG, Garcia JA, Mendez MA, Paolicchi FA, Amadio AF, Gioffre AK. | Vet World | 10.14202/vetworld.2021.1165-1179 | 2021 | |
| Genomic and Phenotypic Characterization of Campylobacter fetus subsp. venerealis Strains. | Silva MF, Pereira AL, Fraqueza MJ, Pereira G, Mateus L, Lopes-da-Costa L, Silva E. | Microorganisms | 10.3390/microorganisms9020340 | 2021 | ||
| L-cysteine transporter-PCR to detect hydrogen sulfide-producing Campylobacter fetus. | Farace PD, Morsella CG, Cravero SL, Sioya BA, Amadio AF, Paolicchi FA, Gioffre AK. | PeerJ | 10.7717/peerj.7820 | 2019 | ||
| Genetics | Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production. | van der Graaf-van Bloois L, Duim B, Miller WG, Forbes KJ, Wagenaar JA, Zomer A. | BMC Genomics | 10.1186/s12864-016-3058-7 | 2016 | |
| Genetics | Campylobacter fetus Subspecies Contain Conserved Type IV Secretion Systems on Multiple Genomic Islands and Plasmids. | Graaf-van Bloois Lv, Miller WG, Yee E, Gorkiewicz G, Forbes KJ, Zomer AL, Wagenaar JA, Duim B. | PLoS One | 10.1371/journal.pone.0152832 | 2016 | |
| Phylogeny | Inconsistency of phenotypic and genomic characteristics of Campylobacter fetus subspecies requires reevaluation of current diagnostics. | van der Graaf-van Bloois L, Miller WG, Yee E, Rijnsburger M, Wagenaar JA, Duim B. | J Clin Microbiol | 10.1128/jcm.01837-14 | 2014 | |
| Genetics | Comparative Genomics of Campylobacter fetus from Reptiles and Mammals Reveals Divergent Evolution in Host-Associated Lineages. | Gilbert MJ, Miller WG, Yee E, Zomer AL, van der Graaf-van Bloois L, Fitzgerald C, Forbes KJ, Meric G, Sheppard SK, Wagenaar JA, Duim B. | Genome Biol Evol | 10.1093/gbe/evw146 | 2016 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #51797 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33872 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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