Virgibacillus salexigens C-20Mo is an obligate aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from saltern in Huelva.
spore-forming Gram-positive motile rod-shaped colony-forming obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Bacillaceae |
| Genus Virgibacillus |
| Species Virgibacillus salexigens |
| Full scientific name Virgibacillus salexigens (Garabito et al. 1997) Heyrman et al. 2003 |
| Synonyms (2) |
| @ref | Colony shape | Medium used | |
|---|---|---|---|
| 23060 | circular | 10% (wt/vol) total salts complex medium | |
| 122371 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 4383 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: NaCl 100.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 23060 | 10% (wt/vol) total salts complex medium | ||||
| 39328 | Marine agar (MA) | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |||
| 122371 | CIP Medium 13 | Medium recipe at CIP |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 23060 | A31 | A1gamma m-Dpm-direct |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 23060 | casein | + | hydrolysis | ||
| 23060 | 16947 ChEBI | citrate | - | carbon source | |
| 122371 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 23060 | 15824 ChEBI | D-fructose | + | builds acid from | |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 23060 | 12936 ChEBI | D-galactose | - | builds acid from | |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 23060 | 17634 ChEBI | D-glucose | + | builds acid from | |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 23060 | 16899 ChEBI | D-mannitol | - | builds acid from | |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 23060 | 16024 ChEBI | D-mannose | + | builds acid from | |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 23060 | 16551 ChEBI | D-trehalose | - | builds acid from | |
| 23060 | 65327 ChEBI | D-xylose | - | builds acid from | |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 23060 | 16991 ChEBI | dna | + | hydrolysis | |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 23060 | 4853 ChEBI | esculin | + | hydrolysis | |
| 122371 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 23060 | 16813 ChEBI | galactitol | - | builds acid from | |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 23060 | 5291 ChEBI | gelatin | + | hydrolysis | |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 23060 | 17754 ChEBI | glycerol | + | builds acid from | |
| 68371 | 28087 ChEBI | glycogen | + | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 23060 | 62345 ChEBI | L-rhamnose | - | builds acid from | |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 23060 | 17716 ChEBI | lactose | - | builds acid from | |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 23060 | 17306 ChEBI | maltose | + | builds acid from | |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 23060 | 28053 ChEBI | melibiose | - | builds acid from | |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 23060 | 17632 ChEBI | nitrate | - | reduction | |
| 122371 | 17632 ChEBI | nitrate | - | reduction | |
| 122371 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 23060 | 28017 ChEBI | starch | - | hydrolysis | |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 23060 | 27897 ChEBI | tryptophan | - | energy source | |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 23060 | 53426 ChEBI | tween 80 | - | hydrolysis | |
| 23060 | 18186 ChEBI | tyrosine | - | hydrolysis | |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 122371 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 122371 | amylase | - | ||
| 23060 | arginine dihydrolase | - | 3.5.3.6 | |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 122371 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 122371 | caseinase | + | 3.4.21.50 | |
| 23060 | catalase | + | 1.11.1.6 | |
| 122371 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 23060 | cytochrome oxidase | + | 1.9.3.1 | |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 122371 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 122371 | gelatinase | + | ||
| 122371 | lecithinase | - | ||
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 122371 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 23060 | lysine decarboxylase | - | 4.1.1.18 | |
| 122371 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 23060 | ornithine decarboxylase | - | 4.1.1.17 | |
| 122371 | ornithine decarboxylase | - | 4.1.1.17 | |
| 122371 | oxidase | + | ||
| 23060 | phenylalanine deaminase | - | 4.3.1.5 | |
| 23060 | phosphatase | - | ||
| 122371 | protease | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 23060 | tryptophan deaminase | - | 4.1.99.1 | |
| 122371 | tryptophan deaminase | - | ||
| 122371 | tween esterase | + | ||
| 122371 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122371 | not determinedn.d. | +/- | - | - | - | + | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | +/- | + | + | + | +/- | + | - | - | - | + | - | - | - | +/- | + | - | - | + | - | - | - | - | - | - | +/- | - | - |
Global distribution of 16S sequence LC016572 (>99% sequence identity) for Virgibacillus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1490541v1 assembly for Virgibacillus salexigens DSM 11483 | scaffold | 61016 | 30.49 | ||||
| 66792 | ASM1490543v1 assembly for Virgibacillus salexigens NT N53 | contig | 61016 | 0.13 | ||||
| 66792 | ASM1490545v1 assembly for Virgibacillus salexigens P2 | scaffold | 61016 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | B.salexigens 16S rRNA gene | Y11603 | 1533 | 61016 | ||
| 20218 | Virgibacillus salexigens isolate Ss1 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | EU723666 | 427 | 61016 | ||
| 67770 | Virgibacillus salexigens gene for 16S ribosomal RNA, partial sequence, strain: JCM 30552 | LC016572 | 1521 | 61016 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 84.90 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 82.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 78.40 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 95.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 84.80 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.94 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 67.99 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 95.34 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.74 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 87.94 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Archaea produce peptidoglycan hydrolases that kill bacteria | Strock R, Soo V, Misson P, Roumelioti G, Shliaha P, Hocher A, Warnecke T. | PLoS Biol | 2025 | |||
| Biosynthetic gene cluster profiling from North Java Sea Virgibacillus salarius reveals hidden potential metabolites. | Radjasa OK, Steven R, Humaira Z, Dwivany FM, Nugrahapraja H, Trinugroho JP, Kristianti T, Chahyadi A, Natanael Y, Priharto N, Kamarisima, Sembiring FAPB, Dwijayanti A, Kusmita L, Moeis MR, Suhardi VSH, Suhardi VSH. | Sci Rep | 10.1038/s41598-023-44603-8 | 2023 | ||
| High-efficiency production of 5-hydroxyectoine using metabolically engineered Corynebacterium glutamicum. | Jungmann L, Hoffmann SL, Lang C, De Agazio R, Becker J, Kohlstedt M, Wittmann C. | Microb Cell Fact | 10.1186/s12934-022-02003-z | 2022 | ||
| Metabolism | Distribution of class IId bacteriocin-producing Virgibacillus salexigens in various environments. | Omachi H, Terahara T, Futami K, Kawato S, Imada C, Kamei K, Waku T, Kondo A, Naganuma T, Agustini TW, Kobayashi T | World J Microbiol Biotechnol | 10.1007/s11274-021-03085-4 | 2021 | |
| Phylogeny | Bacillus salexigens sp. nov., a new moderately halophilic Bacillus species. | Garabito MJ, Arahal DR, Mellado E, Marquez MC, Ventosa A | Int J Syst Bacteriol | 10.1099/00207713-47-3-735 | 1997 |
| #4383 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11483 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #23060 | Maria J. Garabito,David R. Arahal,Encarnación Mellado,M. Carmen Márquez,Antonio Ventosa: Bacillus salexigens sp. nov., a New Moderately Halophilic Bacillus Species. IJSEM 47: 735 - 741 1997 ( DOI 10.1099/00207713-47-3-735 , PubMed 9226905 ) |
| #39328 | ; Curators of the CIP; |
| #59520 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52350 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #122371 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105608 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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