Name: Virgibacillus salexigens C-20Mo
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1476

Type strain:

Species: Virgibacillus salexigens

Strain Designation: C-20Mo

Culture col. no.: DSM 11483, ATCC 700290, CCM 4646, JCM 30552, CCUG 52350, CIP 105608, KACC 10867, KACC 14582, KCTC 3704, KCTC 3844, LMG 21520

Strain history: CIP <- 1998, A. Ventosa, Fac. Pharm., Univ. Sevilla, Spain: strain C-20Mo

NCBI tax ID(s): 61016 (species)

SI-ID 12431

LMG 18726, ATCC 700290, CCM 4646, DSM 11483, CIP 105608, LMG 21520, KCTC 3704, KCTC 3844, KACC 10867, CCUG 52350

Section

Virgibacillus salexigens C-20Mo is an obligate aerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from saltern in Huelva.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Virgibacillus*
	Species	**Virgibacillus salexigens**
	Full Scientific Name (LPSN)	Virgibacillus salexigens (Garabito et al. 1997) Heyrman et al. 2003

	Synonym	Salibacillus salexigens
	Synonym	Bacillus salexigens

Information on morphological and physiological properties Morphology

[Ref.: #23060]	Gram stain	positive
[Ref.: #122371]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23060]	Cell length	1.5-3.5 µm

[Ref.: #23060]	Cell width	0.3-0.6 µm

[Ref.: #23060]	Cell shape	rod-shaped
[Ref.: #122371]	Cell shape	rod-shaped

[Ref.: #23060]	Motility	yes
[Ref.: #122371]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.458

[Ref.: #23060]	Colony shape	circular
[Ref.: #23060]	Cultivation medium used	10% (wt/vol) total salts complex medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4383]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #4383]

Culture medium growth

[Ref.: #4383]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4383]

Culture medium composition

expand / minimize

[Ref.: #23060]

Culture medium

10% (wt/vol) total salts complex medium

[Ref.: #23060]

Culture medium growth

[Ref.: #39328]

Culture medium

Marine agar (MA)

[Ref.: #39328]

Culture medium growth

[Ref.: #39328]

Culture medium composition

expand / minimize

[Ref.: #122371]

Culture medium

CIP Medium 13

[Ref.: #122371]

Culture medium growth

[Ref.: #122371]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4383]		growth	30 °C
[Ref.: #23060]		growth	15.0-45.0 °C
[Ref.: #23060]		growth	45.0 °C
[Ref.: #23060]	no	growth	50.0 °C
[Ref.: #23060]		optimum	37.0 °C
[Ref.: #39328]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #122371]		growth	30-45 °C
[Ref.: #122371]	no	growth	10 °C
[Ref.: #122371]	no	growth	55 °C

[Ref.: #4383]	Temperature range	mesophilic
[Ref.: #23060]	Temperature range	thermophilic
[Ref.: #23060]	Temperature range	mesophilic
[Ref.: #39328]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #122371]	Temperature range	psychrophilic
[Ref.: #122371]	Temperature range	thermophilic

		pH
[Ref.: #23060]	optimum	7.5
[Ref.: #23060]	growth	6.0-11.0
[Ref.: #23060]	growth	6.0
[Ref.: #23060]	growth	11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23060]	Oxygen tolerance	obligate aerobe
[Ref.: #122371]	Oxygen tolerance	obligate aerobe

[Ref.: #23060]	Spore description	oval,subterminal or central,in swollen sporangia
[Ref.: #23060]	Type of spore	endospore
[Ref.: #23060]	Ability of spore formation	yes
[Ref.: #122371]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.734

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #122371]		NaCl		growth	2-10	%
[Ref.: #122371]		NaCl	no	growth	0	%

[Ref.: #23060]	Murein short key	A31
[Ref.: #23060]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23060]	casein	+	hydrolysis
[Ref.: #23060]	citrate ChEBI	-	carbon source
[Ref.: #122371]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	D-fructose ChEBI	+	builds acid from
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	D-galactose ChEBI	-	builds acid from
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	D-glucose ChEBI	+	builds acid from
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	D-mannose ChEBI	+	builds acid from
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	D-trehalose ChEBI	-	builds acid from
[Ref.: #23060]	D-xylose ChEBI	-	builds acid from
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	dna ChEBI	+	hydrolysis
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	esculin ChEBI	+	hydrolysis
[Ref.: #122371]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23060]	galactitol ChEBI	-	builds acid from
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	gelatin ChEBI	+	hydrolysis
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	glycerol ChEBI	+	builds acid from
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	lactose ChEBI	-	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	maltose ChEBI	+	builds acid from
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23060]	melibiose ChEBI	-	builds acid from
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23060]	nitrate ChEBI	-	reduction
[Ref.: #122371]	nitrate ChEBI	-	reduction
[Ref.: #122371]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23060]	starch ChEBI	-	hydrolysis
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23060]	tryptophan ChEBI	-	energy source
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23060]	tween 80 ChEBI	-	hydrolysis
[Ref.: #23060]	tyrosine ChEBI	-	hydrolysis
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #23060]	ampicillin ChEBI	yes
[Ref.: #23060]	bacitracin ChEBI	yes
[Ref.: #23060]	carbenicillin ChEBI	yes
[Ref.: #23060]	cephalothin ChEBI	yes
[Ref.: #23060]	chloramphenicol ChEBI	yes
[Ref.: #23060]	erythromycin ChEBI		yes
[Ref.: #23060]	nalidixic acid ChEBI		yes
[Ref.: #23060]	novobiocin ChEBI	yes
[Ref.: #23060]	penicillin g ChEBI	yes
[Ref.: #23060]	polymyxin ChEBI		yes
[Ref.: #23060]	rifampicin ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23060]	acetoin ChEBI	no
[Ref.: #23060]	hydrogen sulfide ChEBI	yes
[Ref.: #23060]	indole ChEBI	no
[Ref.: #122371]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test	Citrate test
[Ref.: #23060]	acetoin ChEBI	-
[Ref.: #122371]	acetoin ChEBI	-
[Ref.: #23060]	citrate ChEBI				-
[Ref.: #122371]	glucose ChEBI		-
[Ref.: #23060]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122371]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122371]	amylase	-
[Ref.: #23060]	arginine dihydrolase	-	3.5.3.6
[Ref.: #122371]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122371]	caseinase	+	3.4.21.50
[Ref.: #23060]	catalase	+	1.11.1.6
[Ref.: #122371]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #23060]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122371]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122371]	gelatinase	+
[Ref.: #122371]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #122371]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #23060]	lysine decarboxylase	-	4.1.1.18
[Ref.: #122371]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #23060]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122371]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122371]	oxidase	+
[Ref.: #23060]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #23060]	phosphatase	-
[Ref.: #122371]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #23060]	tryptophan deaminase	-	4.1.99.1
[Ref.: #122371]	tryptophan deaminase	-
[Ref.: #122371]	tween esterase	+
[Ref.: #122371]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122371]	10143	not determinedn.d.	+/-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+/-	+	+	+	+/-	+	-	-	-	+	-	-	-	+/-	+	-	-	+	-	-	-	-	-	-	+/-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122371]	1243	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	+	-	-	-	+	+	+	+	-	+	+	+	+	-	-	-	-	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	+	+	-	+	+	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122371]	8839	-	+	-	+	-	-	-	-	-	+	+	+	-	+	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4383]	Sample type/isolated from	saltern in Huelva
[Ref.: #4383]	Country	Spain
[Ref.: #4383]	Country ISO 3 Code	ESP
[Ref.: #4383]	Continent	Europe

[Ref.: #59520]	Sample type/isolated from	Saltern
[Ref.: #59520]	Geographic location (country and/or sea, region)	Huelva
[Ref.: #59520]	Country	Spain
[Ref.: #59520]	Country ISO 3 Code	ESP
[Ref.: #59520]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Saltern
[Ref.: #67770]	Geographic location (country and/or sea, region)	Huelva
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe

[Ref.: #122371]	Sample type/isolated from	Environment, Salterns water
[Ref.: #122371]	Geographic location (country and/or sea, region)	Huelva
[Ref.: #122371]	Country	Spain
[Ref.: #122371]	Country ISO 3 Code	ESP
[Ref.: #122371]	Continent	Europe
[Ref.: #122371]	Isolation date	1991
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC016572 (>99% sequence identity) for Virgibacillus from Microbeatlas

Aquatic Samples	2
Soil Samples	3
Animal Samples	6
Plant Samples
Total Samples	11

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4383]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122371]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Virgibacillus salexigens gene for 16S ribosomal RNA, partial sequence, strain: JCM 30552	LC016572	1521	ENA	61016 tax ID
[Ref.: #20218]	B.salexigens 16S rRNA gene	Y11603	1533	ENA	61016 tax ID	*
[Ref.: #20218]	Virgibacillus salexigens isolate Ss1 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723666	427	ENA	61016 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Virgibacillus salexigens DSM 11483	GCA_014905415	scaffold	GenBank	61016 tax ID	*
[Ref.: #66792]	Virgibacillus massiliensis strain Vm-5	1462526.12	wgs	PATRIC	1462526 tax ID	*
[Ref.: #66792]	Virgibacillus salexigens strain DSM 11483	61016.3	wgs	PATRIC	61016 tax ID	*
[Ref.: #66792]	Virgibacillus salexigens strain NT N53	61016.4	wgs	PATRIC	61016 tax ID	*
[Ref.: #66792]	Virgibacillus salexigens strain P2	61016.5	wgs	PATRIC	61016 tax ID	*

[Ref.: #4383]	GC-content	36.3-39.5 mol%
[Ref.: #23060]	GC-content	39.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Virgibacillus salexigens DSM 11483 NCBI: GCA_014905415.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Virgibacillus salexigens DSM 11483 NCBI: GCA_014905415.1
[Ref.: #69480]	motile	yes	90.939	no
[Ref.: #69480]	flagellated	yes	87.484	no
[Ref.: #69480]	gram-positive	yes	91.905	yes
[Ref.: #69480]	anaerobic	no	99.359	yes
[Ref.: #69480]	aerobic	yes	94.224	no
[Ref.: #69480]	halophile	yes	93.609	no
[Ref.: #69480]	spore-forming	yes	95.847	no
[Ref.: #69480]	glucose-util	yes	87.79	no
[Ref.: #69480]	glucose-ferment	no	87.881	no
[Ref.: #69480]	thermophile	no	97.692	no

Availability in culture collections External links

[Ref.: #4383]

Culture collection no.

DSM 11483, ATCC 700290, CCM 4646, JCM 30552, CCUG 52350, CIP 105608, KACC 10867, KACC 14582, KCTC 3704, KCTC 3844, LMG 21520

[Ref.: #71122]

SI-ID 12431

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Distribution of class IId bacteriocin-producing Virgibacillus salexigens in various environments.	Omachi H, Terahara T, Futami K, Kawato S, Imada C, Kamei K, Waku T, Kondo A, Naganuma T, Agustini TW, Kobayashi T	World J Microbiol Biotechnol	10.1007/s11274-021-03085-4	2021	*
Phylogeny	Bacillus salexigens sp. nov., a new moderately halophilic Bacillus species.	Garabito MJ, Arahal DR, Mellado E, Marquez MC, Ventosa A	Int J Syst Bacteriol	10.1099/00207713-47-3-735	1997	*

References

#4383

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11483

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23060

Maria J. Garabito,David R. Arahal,Encarnación Mellado,M. Carmen Márquez,Antonio Ventosa: Bacillus salexigens sp. nov., a New Moderately Halophilic Bacillus Species. IJSEM 47: 735 - 741 1997 ( DOI 10.1099/00207713-47-3-735 , PubMed 9226905 )

#39328 ; Curators of the CIP;
#59520 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52350

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71122

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID12431.1 )

#122371 Collection of Institut Pasteur ; Curators of the CIP; CIP 105608
* These data were automatically processed and therefore are not curated

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Virgibacillus salexigens DSM 11483

Virgibacillus salexigens DSM 11483

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