Streptococcus pneumoniae CCUG 33774 is a microaerophile human pathogen of the family Streptococcaceae.
microaerophile human pathogen genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Streptococcaceae |
| Genus Streptococcus |
| Species Streptococcus pneumoniae |
| Full scientific name Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 5328 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 5328 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68381 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32STR |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 68381 | 16899 ChEBI | D-mannitol | - | builds acid from | from API rID32STR |
| 68381 | 16988 ChEBI | D-ribose | - | builds acid from | from API rID32STR |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68381 | 606565 ChEBI | hippurate | - | hydrolysis | from API rID32STR |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68381 | 17716 ChEBI | lactose | + | builds acid from | from API rID32STR |
| 68381 | 17306 ChEBI | maltose | + | builds acid from | from API rID32STR |
| 68381 | 6731 ChEBI | melezitose | - | builds acid from | from API rID32STR |
| 68381 | 27941 ChEBI | pullulan | + | builds acid from | from API rID32STR |
| 68381 | 16634 ChEBI | raffinose | + | builds acid from | from API rID32STR |
| 68381 | 30911 ChEBI | sorbitol | - | builds acid from | from API rID32STR |
| 68381 | 17992 ChEBI | sucrose | + | builds acid from | from API rID32STR |
| 68381 | 27082 ChEBI | trehalose | + | builds acid from | from API rID32STR |
| 68381 | 16199 ChEBI | urea | - | hydrolysis | from API rID32STR |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68381 | 15688 ChEBI | acetoin | from API rID32STR |
| @ref | Chebi-ID | Metabolite | Voges-proskauer-test | |
|---|---|---|---|---|
| 68381 | 15688 ChEBI | acetoin | - | from API rID32STR |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | from API rID32STR | |
| 68381 | alkaline phosphatase | - | 3.1.3.1 | from API rID32STR |
| 68381 | arginine dihydrolase | - | 3.5.3.6 | from API rID32STR |
| 68381 | beta-glucosidase | - | 3.2.1.21 | from API rID32STR |
| 68381 | beta-glucuronidase | - | 3.2.1.31 | from API rID32STR |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 5328 | catalase | + | 1.11.1.6 | |
| 5328 | cytochrome-c oxidase | - | 1.9.3.1 | |
| 68381 | glycyl tryptophan arylamidase | + | from API rID32STR | |
| 68381 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API rID32STR |
| 68381 | urease | - | 3.5.1.5 | from API rID32STR |
| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5328 | - | - | + | - | + | - | - | - | - | + | + | + | + | - | - | - | - | + | + | + | + | + | - | - | + | + | - | - | - | - | - | - | |
| 5328 | - | - | + | - | + | - | - | - | - | + | + | + | + | - | - | - | - | + | - | + | + | + | - | - | + | + | + | - | + | +/- | - | - | |
| 5328 | - | - | + | - | +/- | - | - | - | - | + | + | + | + | - | - | - | - | + | - | + | - | + | - | - | + | + | - | - | - | - | - | - | |
| 5328 | - | - | + | - | + | - | - | - | - | + | + | + | + | - | - | - | - | + | + | + | + | + | - | - | + | + | - | - | - | +/- | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM199936v1 assembly for Streptococcus pneumoniae ATCC 6305 | scaffold | 1313 | 66.66 | ||||
| 66792 | ASM163746v1 assembly for Streptococcus pneumoniae CCUG 33774 | scaffold | 1313 | 61.33 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Streptococcus pneumoniae strain ATCC 6305 16S ribosomal RNA gene, partial sequence. | OR501371 | 1410 | 1313 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 86.80 | no |
| 125439 | motility | BacteriaNetⓘ | no | 76.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 80.90 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | microaerophile | 99.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 88.88 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 86.12 | no |
| 125438 | aerobic | aerobicⓘ | no | 97.75 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 83.83 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Vaccination With the Commensal Streptococcus mitis Expressing Pneumococcal Serotype 5 Capsule Elicits IgG/IgA and Th17 Responses Against Streptococcus pneumoniae. | Shekhar S, Amdal HA, Petersen FC. | Front Immunol | 10.3389/fimmu.2021.676488 | 2021 | ||
| Genetics | A Pangenome Approach for Discerning Species-Unique Gene Markers for Identifications of Streptococcus pneumoniae and Streptococcus pseudopneumoniae. | Gonzales-Siles L, Karlsson R, Schmidt P, Salva-Serra F, Jaen-Luchoro D, Skovbjerg S, Moore ERB, Gomila M. | Front Cell Infect Microbiol | 10.3389/fcimb.2020.00222 | 2020 | |
| Streptococcus pneumoniae autolysis prevents phagocytosis and production of phagocyte-activating cytokines. | Martner A, Skovbjerg S, Paton JC, Wold AE. | Infect Immun | 10.1128/iai.00290-09 | 2009 | ||
| Metabolism | Pneumolysin released during Streptococcus pneumoniae autolysis is a potent activator of intracellular oxygen radical production in neutrophils. | Martner A, Dahlgren C, Paton JC, Wold AE. | Infect Immun | 10.1128/iai.01747-07 | 2008 | |
| Metabolism | Development of a rapid recombinase polymerase amplification assay for the detection of Streptococcus pneumoniae in whole blood. | Clancy E, Higgins O, Forrest MS, Boo TW, Cormican M, Barry T, Piepenburg O, Smith TJ. | BMC Infect Dis | 10.1186/s12879-015-1212-5 | 2015 | |
| Duplex ddPCR detection of lytA and piaB in Streptococcus pneumoniae from nasopharyngeal swabs. | Kallsberg A, Magnussen JH, Djuurhus A, Slotved HC, Magnussen MD, Gaini S, Krogfelt KA. | Sci Rep | 10.1038/s41598-025-25670-5 | 2025 | ||
| A novel LAMP-based assay for the identification of Streptococcus pneumoniae and Streptococcus pseudopneumoniae in clinical isolates. | Basheer M, Sasic K, Carlsson A, Vestberg N, Henriques-Normark B, Blomqvist K, Garriss G. | J Clin Microbiol | 10.1128/jcm.00912-24 | 2024 | ||
| Implementation of convolutional neural networks for microbial colony recognition. | Kong F, Su M, Guo J, Wu H, Chen H, Qiu J, Huang J. | Microbiol Spectr | 10.1128/spectrum.02885-24 | 2025 | ||
| Phylogeny | Performance assessment of the Bruker Biotyper MALDI-TOF MS for the identification of difficult-to-identify viridans group streptococci. | Wan T-W, Lee T-F, Chen X-J, Hunag Y-T, Teng L-J, Hsueh P-R, Chiu H-C. | J Clin Microbiol | 10.1128/jcm.01143-23 | 2023 | |
| New Streptomyces-Derived Antibacterial Compounds Targeting Gram-Positive Bacteria: A Systematic Review. | Ait Assou S, El Hassouni M. | ScientificWorldJournal | 10.1155/tswj/6659874 | 2025 | ||
| Protective responses of an engineered PspA recombinant antigen against Streptococcus pneumoniae. | Akbari E, Negahdari B, Faraji F, Behdani M, Kazemi-Lomedasht F, Habibi-Anbouhi M. | Biotechnol Rep (Amst) | 10.1016/j.btre.2019.e00385 | 2019 | ||
| Quorum sensing regulators and non-ribosomal peptide synthetases govern antibacterial secretions in Xenorhabdus szentirmaii. | Dey R, Valle DO, Chakraborty A, Mayer KA, Uppala JK, Chakraborty A, Mirza S, Skwor T, Forst S, Dey M. | Front Microbiol | 10.3389/fmicb.2025.1560663 | 2025 | ||
| Synthesis, Antibacterial Effects, and Toxicity of Licochalcone C. | Ozanique PR, Helena AL, Menezes RP, Goncalves DS, Santiago MB, Dilarri G, Sardi JCO, Ferreira H, Martins CHG, Regasini LO. | Pharmaceuticals (Basel) | 10.3390/ph17050634 | 2024 | ||
| Rapid, Low-Complexity, Simultaneous Bacterial Group Identification and Antimicrobial Susceptibility Testing Performed Directly on Positive Blood Culture Bottles Using Chromogenic Agar. | Robberts FJL, Owusu-Ofori A, Oduro G, Gyampomah TK, Marles N, Fox AT, Chenoweth JG, Schully KL, Clark DV. | Am J Trop Med Hyg | 10.4269/ajtmh.22-0278 | 2022 | ||
| Application of Digital Holographic Microscopy to Analyze Changes in T-Cell Morphology in Response to Bacterial Challenge. | Vom Werth KL, Kemper B, Kampmeier S, Mellmann A. | Cells | 10.3390/cells12050762 | 2023 | ||
| Chemical Constituents and Their Biological Activities from Genus Styrax. | Xia DD, Han XY, Zhang Y, Zhang N. | Pharmaceuticals (Basel) | 10.3390/ph16071043 | 2023 | ||
| The Genotyping Diversity and Hemolytic Activity of Cronobacter spp. Isolated from Plant-Based Food Products in Poland. | Garbowska M, Berthold-Pluta A, Stasiak-Rozanska L, Pluta A, Forsythe S, Stefanska I. | Foods | 10.3390/foods12203873 | 2023 | ||
| Green Synthesis: The Antibacterial and Photocatalytic Potential of Silver Nanoparticles Using Extract of Teucrium stocksianum. | Rehman I, Gondal HY, Zamir R, Al-Hussain SA, Batool F, Irfan A, Noreen S, Roheen T, Nisar M, Zaki MEA. | Nanomaterials (Basel) | 10.3390/nano13081343 | 2023 | ||
| Rapid and sensitive detection of methicillin-resistant Staphylococcus aureus through the RPA-PfAgo system. | Chen W, Zhang J, Wei H, Su J, Lin J, Liang X, Chen J, Zhou R, Li L, Lu Z, Sun G. | Front Microbiol | 10.3389/fmicb.2024.1422574 | 2024 | ||
| Highly specific and rapid glycan based amperometric detection of influenza viruses. | Cui X, Das A, Dhawane AN, Sweeney J, Zhang X, Chivukula V, Iyer SS. | Chem Sci | 10.1039/c6sc03720h | 2017 | ||
| Phylogeny | 23-valent polysaccharide vaccine (PPSV23)-targeted serotype-specific identification of Streptococcus pneumoniae using the loop-mediated isothermal amplification (LAMP) method. | Lee J, Yoon Y, Kim EJ, Lee D, Baek Y, Takano C, Chang B, Iijima T, Kilgore PE, Hayakawa S, Hoshino T, Kim DW, Seki M. | PLoS One | 10.1371/journal.pone.0246699 | 2021 | |
| Genetics | Safety Assessment of Lactiplantibacillus plantarum TWK10 Based on Whole-Genome Sequencing, Phenotypic, and Oral Toxicity Analysis. | Hsu HY, Liao YC, Lin SH, Lin JS, Lee CC, Watanabe K. | Microorganisms | 10.3390/microorganisms10040784 | 2022 | |
| Antibacterial Activity of Isobavachalcone (IBC) Is Associated with Membrane Disruption. | Assis LR, Theodoro RDS, Costa MBS, Nascentes JAS, Rocha MDD, Bessa MAS, Menezes RP, Dilarri G, Hypolito GB, Santos VRD, Duque C, Ferreira H, Martins CHG, Regasini LO. | Membranes (Basel) | 10.3390/membranes12030269 | 2022 | ||
| Pleural fluid penetration of moxifloxacin and doripenem: An experimental model of empyema. | Calik M, Calik SG, Dagli M, Kesli R, Esme H. | North Clin Istanb | 10.14744/nci.2019.05902 | 2020 | ||
| Antimicrobial Resistant Pattern and Capsular Typing of Streptococcus Pneumoniae Isolated from Children in Sistan -Baluchestan. | Gharailoo Z, Mousavi SF, Halvani N, Feizabadi MM. | Maedica (Bucur) | 2016 | |||
| Hybrid Molecules of Azithromycin with Chloramphenicol and Metronidazole: Synthesis and Study of Antibacterial Properties. | Volynkina IA, Bychkova EN, Karakchieva AO, Tikhomirov AS, Zatonsky GV, Solovieva SE, Martynov MM, Grammatikova NE, Tereshchenkov AG, Paleskava A, Konevega AL, Sergiev PV, Dontsova OA, Osterman IA, Shchekotikhin AE, Tevyashova AN. | Pharmaceuticals (Basel) | 10.3390/ph17020187 | 2024 | ||
| In-silico design and evaluation of an epitope-based serotype-independent promising vaccine candidate for highly cross-reactive regions of pneumococcal surface protein A. | Afshari E, Cohan RA, Sotoodehnejadnematalahi F, Mousavi SF. | J Transl Med | 10.1186/s12967-022-03864-z | 2023 | ||
| The Evolving Epidemiology of Serotype Distribution and Antimicrobial Resistance of Streptococcus pneumoniae Strains Isolated from Adults in Crete, Greece, 2009-2016. | Maraki S, Mavromanolaki VE, Stafylaki D, Hamilos G, Samonis G. | Infect Chemother | 10.3947/ic.2018.50.4.328 | 2018 | ||
| Metabolism | Pharmacokinetics and Disposition of Contezolid in Humans: Resolution of a Disproportionate Human Metabolite for Clinical Development. | Wu X, Meng J, Yuan H, Zhong D, Yu J, Cao G, Liu X, Guo B, Chen Y, Li Y, Shi Y, Gordeev MF, Wu J, Zhang J. | Antimicrob Agents Chemother | 10.1128/aac.00409-21 | 2021 | |
| Enzymology | Evaluation of Liquid-Based Swab Transport Systems against the New Approved CLSI M40-A2 Standard. | Gizzie N, Adukwu E. | J Clin Microbiol | 10.1128/jcm.03337-15 | 2016 | |
| Enzymology | Time-to-detection of bacteria and yeast with the BACTEC FX versus BacT/Alert Virtuo blood culture systems. | Somily AM, Habib HA, Torchyan AA, Sayyed SB, Absar M, Al-Aqeel R, Binkhamis AK. | Ann Saudi Med | 10.5144/0256-4947.2018.194 | 2018 | |
| Molecular Detection of Streptococcus pyogenes by Strand Invasion Based Amplification Assay. | Elf S, Olli J, Hirvonen S, Auvinen P, Eboigbodin KE. | Mol Diagn Ther | 10.1007/s40291-018-0346-8 | 2018 | ||
| Pathogenicity | Antimicrobial Activity of Zabofloxacin against Clinically Isolated Streptococcus pneumoniae. | Park HS, Oh SH, Kim HS, Choi DR, Kwak JH. | Molecules | 10.3390/molecules21111562 | 2016 | |
| Enzymology | The Challenges of Using Oropharyngeal Samples To Measure Pneumococcal Carriage in Adults. | Boelsen LK, Dunne EM, Gould KA, Ratu FT, Vidal JE, Russell FM, Mulholland EK, Hinds J, Satzke C. | mSphere | 10.1128/msphere.00478-20 | 2020 | |
| Serotyping of Streptococcus pneumoniae isolated from Tehran by Multiplex PCR: Are serotypes of clinical and carrier isolates identical? | Mousavi SF, Nobari S, Rahmati Ghezelgeh F, Lyriai H, Jalali P, Shahcheraghi F, Oskoui M. | Iran J Microbiol | 2013 | |||
| Enzymology | Detection of human rhinoviruses by reverse transcription strand invasion based amplification method (RT-SIBA). | Kainulainen V, Elf S, Susi P, Maki M, Pitkaranta A, Koskinen JO, Korpela R, Eboigbodin KE. | J Virol Methods | 10.1016/j.jviromet.2018.10.015 | 2019 | |
| The enhanced pneumococcal LAMP assay: a clinical tool for the diagnosis of meningitis due to Streptococcus pneumoniae. | Kim DW, Kilgore PE, Kim EJ, Kim SA, Anh DD, Dong BQ, Kim JS, Seki M. | PLoS One | 10.1371/journal.pone.0042954 | 2012 | ||
| Aminoalkylamides of Eremomycin Exhibit an Improved Antibacterial Activity. | Moiseenko EI, Erdei R, Grammatikova NE, Mirchink EP, Isakova EB, Pereverzeva ER, Batta G, Shchekotikhin AE. | Pharmaceuticals (Basel) | 10.3390/ph14040379 | 2021 | ||
| Zincophorin - biosynthesis in Streptomyces griseus and antibiotic properties. | Walther E, Boldt S, Kage H, Lauterbach T, Martin K, Roth M, Hertweck C, Sauerbrei A, Schmidtke M, Nett M. | GMS Infect Dis | 10.3205/id000026 | 2016 | ||
| Generation and Improvement of Effector Function of a Novel Broadly Reactive and Protective Monoclonal Antibody against Pneumococcal Surface Protein A of Streptococcus pneumoniae. | Kristian SA, Ota T, Bubeck SS, Cho R, Groff BC, Kubota T, Destito G, Martin C, Laudenslager J, Koriazova L, Tahara T, Kanda Y. | PLoS One | 10.1371/journal.pone.0154616 | 2016 | ||
| In vitro and in vivo activities of LCB01-0371, a new oxazolidinone. | Jeong JW, Jung SJ, Lee HH, Kim YZ, Park TK, Cho YL, Chae SE, Baek SY, Woo SH, Lee HS, Kwak JH. | Antimicrob Agents Chemother | 10.1128/aac.00723-10 | 2010 | ||
| Inhibition of Streptococcus pneumoniae adherence to human epithelial cells in vitro by the probiotic Lactobacillus rhamnosus GG. | Wong SS, Quan Toh Z, Dunne EM, Mulholland EK, Tang ML, Robins-Browne RM, Licciardi PV, Satzke C. | BMC Res Notes | 10.1186/1756-0500-6-135 | 2013 | ||
| Pathogenicity | Copaifera langsdorffii oleoresin and its isolated compounds: antibacterial effect and antiproliferative activity in cancer cell lines. | Abrao F, de Araujo Costa LD, Alves JM, Senedese JM, de Castro PT, Ambrosio SR, Veneziani RC, Bastos JK, Tavares DC, Martins CH. | BMC Complement Altern Med | 10.1186/s12906-015-0961-4 | 2015 | |
| The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji. | Boelsen LK, Dunne EM, Mika M, Eggers S, Nguyen CD, Ratu FT, Russell FM, Mulholland EK, Hilty M, Satzke C. | Microbiome | 10.1186/s40168-019-0716-4 | 2019 | ||
| Genetics | Reduced metagenome sequencing for strain-resolution taxonomic profiles. | Snipen L, Angell IL, Rognes T, Rudi K. | Microbiome | 10.1186/s40168-021-01019-8 | 2021 | |
| Enzymology | Effect of pneumococcal vaccination on nasopharyngeal carriage of Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, and Staphylococcus aureus in Fijian children. | Dunne EM, Manning J, Russell FM, Robins-Browne RM, Mulholland EK, Satzke C. | J Clin Microbiol | 10.1128/jcm.06589-11 | 2012 | |
| Phylogeny | Loop-mediated isothermal amplification method targeting the lytA gene for detection of Streptococcus pneumoniae. | Seki M, Yamashita Y, Torigoe H, Tsuda H, Sato S, Maeno M. | J Clin Microbiol | 10.1128/jcm.43.4.1581-1586.2005 | 2005 | |
| Quantitative detection of Staphylococcus aureus, Streptococcus pneumoniae and Haemophilus influenzae in patients with new influenza A (H1N1)/2009 and influenza A/2010 virus infection. | Safaeyan F, Nahaei MR, Seifi SJ, Kafil HS, Sadeghi J. | GMS Hyg Infect Control | 10.3205/dgkh000249 | 2015 | ||
| Enzymology | Evaluation of five real-time PCR assays for detection of Mycoplasma pneumoniae. | Dumke R, Jacobs E. | J Clin Microbiol | 10.1128/jcm.02048-14 | 2014 | |
| Cultivation | As a bacterial culture medium, citrated sheep blood agar is a practical alternative to citrated human blood agar in laboratories of developing countries. | Russell FM, Biribo SS, Selvaraj G, Oppedisano F, Warren S, Seduadua A, Mulholland EK, Carapetis JR. | J Clin Microbiol | 10.1128/jcm.02631-05 | 2006 | |
| Pathogenicity | In vitro and in vivo antibacterial activities of DW-224a, a new fluoronaphthyridone. | Park HS, Kim HJ, Seol MJ, Choi DR, Choi EC, Kwak JH. | Antimicrob Agents Chemother | 10.1128/aac.01407-05 | 2006 | |
| Conserved surface accessible nucleoside ABC transporter component SP0845 is essential for pneumococcal virulence and confers protection in vivo. | Saxena S, Khan N, Dehinwal R, Kumar A, Sehgal D. | PLoS One | 10.1371/journal.pone.0118154 | 2015 | ||
| Development and evaluation of a rapid nucleic acid amplification method to detect influenza A and B viruses in human respiratory specimens. | Elf S, Auvinen P, Jahn L, Liikonen K, Sjoblom S, Saavalainen P, Maki M, Eboigbodin KE. | Diagn Microbiol Infect Dis | 10.1016/j.diagmicrobio.2018.04.006 | 2018 | ||
| Pathogenicity | Investigating the effects of probiotics on pneumococcal colonization using an in vitro adherence assay. | Dunne EM, Toh ZQ, John M, Manning J, Satzke C, Licciardi P. | J Vis Exp | 10.3791/51069 | 2014 | |
| Realtime PCR is more sensitive than multiplex PCR for diagnosis and serotyping in children with culture negative pneumococcal invasive disease. | Azzari C, Moriondo M, Indolfi G, Cortimiglia M, Canessa C, Becciolini L, Lippi F, de Martino M, Resti M. | PLoS One | 10.1371/journal.pone.0009282 | 2010 | ||
| Metabolism | Sequence diversity of NanA manifests in distinct enzyme kinetics and inhibitor susceptibility. | Xu Z, von Grafenstein S, Walther E, Fuchs JE, Liedl KR, Sauerbrei A, Schmidtke M. | Sci Rep | 10.1038/srep25169 | 2016 | |
| Cultivation | Diagnostic accuracy of antigen-based immunochromatographic rapid diagnostic tests for the detection of Salmonella in blood culture broth. | Kuijpers LMF, Chung P, Peeters M, Phoba MF, Kham C, Barbe B, Lunguya O, Jacobs J. | PLoS One | 10.1371/journal.pone.0194024 | 2018 | |
| Survival of Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis frozen in skim milk- tryptone-glucose-glycerol medium. | Kaijalainen T, Ruokokoski E, Ukkonen P, Herva E. | J Clin Microbiol | 10.1128/jcm.42.1.412-414.2004 | 2004 | ||
| Evaluation of several biochemical and molecular techniques for identification of Streptococcus pneumoniae and Streptococcus pseudopneumoniae and their detection in respiratory samples. | Wessels E, Schelfaut JJ, Bernards AT, Claas EC. | J Clin Microbiol | 10.1128/jcm.06609-11 | 2012 | ||
| Factors associated with pneumococcal carriage and density in infants and young children in Laos PDR. | Dunne EM, Choummanivong M, Neal EFG, Stanhope K, Nguyen CD, Xeuatvongsa A, Satzke C, Sychareun V, Russell FM. | PLoS One | 10.1371/journal.pone.0224392 | 2019 | ||
| Investigation of Streptococcus salivarius-mediated inhibition of pneumococcal adherence to pharyngeal epithelial cells. | Manning J, Dunne EM, Wescombe PA, Hale JD, Mulholland EK, Tagg JR, Robins-Browne RM, Satzke C. | BMC Microbiol | 10.1186/s12866-016-0843-z | 2016 | ||
| Genetics | Validation and Implementation of Clinical Laboratory Improvements Act-Compliant Whole-Genome Sequencing in the Public Health Microbiology Laboratory. | Kozyreva VK, Truong CL, Greninger AL, Crandall J, Mukhopadhyay R, Chaturvedi V. | J Clin Microbiol | 10.1128/jcm.00361-17 | 2017 | |
| Evaluation of swab transport systems against a published standard. | Human RP, Jones GA. | J Clin Pathol | 10.1136/jcp.2004.016725 | 2004 | ||
| Antibacterial and antioxidant activities of ursolic acid and derivatives. | do Nascimento PG, Lemos TL, Bizerra AM, Arriaga AM, Ferreira DA, Santiago GM, Braz-Filho R, Costa JG. | Molecules | 10.3390/molecules19011317 | 2014 | ||
| Phylogeny | Introduction of new clones of penicillin-nonsusceptible Streptococcus pneumoniae in Hong Kong. | Ip M, Lyon DJ, Yung RW, Tsang L, Cheng AF. | J Clin Microbiol | 10.1128/jcm.40.4.1522-1525.2002 | 2002 | |
| Enzymology | Pharmacokinetics and efficacy of linezolid in a gerbil model of Streptococcus pneumoniae-induced acute otitis media. | Humphrey WR, Shattuck MH, Zielinski RJ, Kuo MS, Biermacher JJ, Smith DP, Jensen JL, Schaadt RD, Zurenko GE, Richards IM. | Antimicrob Agents Chemother | 10.1128/aac.47.4.1355-1363.2003 | 2003 | |
| Enzymology | Comparison of Easy-Flow Copan Liquid Stuart's and Starplex Swab transport systems for recovery of fastidious aerobic bacteria. | Drake C, Barenfanger J, Lawhorn J, Verhulst S. | J Clin Microbiol | 10.1128/jcm.43.3.1301-1303.2005 | 2005 | |
| Phylogeny | 16S rRNA gene sequencing on a benchtop sequencer: accuracy for identification of clinically important bacteria. | Watts GS, Youens-Clark K, Slepian MJ, Wolk DM, Oshiro MM, Metzger GS, Dhingra D, Cranmer LD, Hurwitz BL. | J Appl Microbiol | 10.1111/jam.13590 | 2017 | |
| In vitro antibacterial activity of the pyrrolopyrazolyl-substituted oxazolidinone RWJ-416457. | Foleno BD, Abbanat D, Goldschmidt RM, Flamm RK, Paget SD, Webb GC, Wira E, Macielag MJ, Bush K. | Antimicrob Agents Chemother | 10.1128/aac.01017-06 | 2007 | ||
| Anti-Planktonic and Anti-Biofilm Properties of Pentacyclic Triterpenes-Asiatic Acid and Ursolic Acid as Promising Antibacterial Future Pharmaceuticals. | Sycz Z, Tichaczek-Goska D, Wojnicz D. | Biomolecules | 10.3390/biom12010098 | 2022 | ||
| Measuring nasal bacterial load and its association with otitis media. | Smith-Vaughan H, Byun R, Nadkarni M, Jacques NA, Hunter N, Halpin S, Morris PS, Leach AJ. | BMC Ear Nose Throat Disord | 10.1186/1472-6815-6-10 | 2006 | ||
| Survival of fastidious and nonfastidious aerobic bacteria in three bacterial transport swab systems. | Rishmawi N, Ghneim R, Kattan R, Ghneim R, Zoughbi M, Abu-Diab A, Turkuman S, Dauodi R, Shomali I, Issa Ael-R, Siriani I, Marzouka H, Schmid I, Hindiyeh MY. | J Clin Microbiol | 10.1128/jcm.02110-06 | 2007 | ||
| Pathogenicity | Novel carbapenem antibiotics for parenteral and oral applications: in vitro and in vivo activities of 2-aryl carbapenems and their pharmacokinetics in laboratory animals. | Fujimoto K, Takemoto K, Hatano K, Nakai T, Terashita S, Matsumoto M, Eriguchi Y, Eguchi K, Shimizudani T, Sato K, Kanazawa K, Sunagawa M, Ueda Y. | Antimicrob Agents Chemother | 10.1128/aac.01051-12 | 2013 | |
| Pathogenicity | In vitro and in vivo activities of a new cephalosporin, FR264205, against Pseudomonas aeruginosa. | Takeda S, Nakai T, Wakai Y, Ikeda F, Hatano K. | Antimicrob Agents Chemother | 10.1128/aac.00860-06 | 2007 | |
| Metabolism | NADPH oxidase-derived H2O2 subverts pathogen signaling by oxidative phosphotyrosine conversion to PB-DOPA. | Alvarez LA, Kovacic L, Rodriguez J, Gosemann JH, Kubica M, Pircalabioru GG, Friedmacher F, Cean A, Ghise A, Sarandan MB, Puri P, Daff S, Plettner E, von Kriegsheim A, Bourke B, Knaus UG. | Proc Natl Acad Sci U S A | 10.1073/pnas.1605443113 | 2016 | |
| Antimicrobial Potential of the Genera Geobacillus and Parageobacillus, as Well as Endolysins Biosynthesized by Their Bacteriophages. | Zebrowska J, Witkowska M, Struck A, Laszuk PE, Raczuk E, Ponikowska M, Skowron PM, Zylicz-Stachula A. | Antibiotics (Basel) | 10.3390/antibiotics11020242 | 2022 | ||
| Enzymology | Sensitive detection of Mycoplasma pneumoniae in human respiratory tract samples by optimized real-time PCR approach. | Dumke R, Schurwanz N, Lenz M, Schuppler M, Luck C, Jacobs E. | J Clin Microbiol | 10.1128/jcm.00321-07 | 2007 | |
| Pathogenicity | Evidence of clonal dissemination of multidrug-resistant Streptococcus pneumoniae in Hong Kong. | Ip M, Lyon DJ, Yung RW, Chan C, Cheng AF. | J Clin Microbiol | 10.1128/jcm.37.9.2834-2839.1999 | 1999 | |
| Enzymology | Loop-mediated isothermal amplification assay for detection of Haemophilus influenzae type b in cerebrospinal fluid. | Kim DW, Kilgore PE, Kim EJ, Kim SA, Anh DD, Seki M. | J Clin Microbiol | 10.1128/jcm.00515-11 | 2011 | |
| Comparison of the Copan ESwab system with two Amies agar swab transport systems for maintenance of microorganism viability. | Van Horn KG, Audette CD, Sebeck D, Tucker KA. | J Clin Microbiol | 10.1128/jcm.02047-07 | 2008 | ||
| Phylogeny | Sensitive and specific method for rapid identification of Streptococcus pneumoniae using real-time fluorescence PCR. | McAvin JC, Reilly PA, Roudabush RM, Barnes WJ, Salmen A, Jackson GW, Beninga KK, Astorga A, McCleskey FK, Huff WB, Niemeyer D, Lohman KL. | J Clin Microbiol | 10.1128/jcm.39.10.3446-3451.2001 | 2001 | |
| Phylogeny | Identification of Streptococcus pneumoniae with a DNA probe. | Denys GA, Carey RB. | J Clin Microbiol | 10.1128/jcm.30.10.2725-2727.1992 | 1992 | |
| Competence for genetic transformation in encapsulated strains of Streptococcus pneumoniae: two allelic variants of the peptide pheromone. | Pozzi G, Masala L, Iannelli F, Manganelli R, Havarstein LS, Piccoli L, Simon D, Morrison DA. | J Bacteriol | 10.1128/jb.178.20.6087-6090.1996 | 1996 | ||
| Pathogenicity | In vitro activities of linezolid combined with other antimicrobial agents against Staphylococci, Enterococci, Pneumococci, and selected gram-negative organisms. | Sweeney MT, Zurenko GE. | Antimicrob Agents Chemother | 10.1128/aac.47.6.1902-1906.2003 | 2003 | |
| Phylogeny | Detection of methicillin-resistant Staphylococcus aureus by a duplex droplet digital PCR assay. | Kelley K, Cosman A, Belgrader P, Chapman B, Sullivan DC. | J Clin Microbiol | 10.1128/jcm.00196-13 | 2013 | |
| Pathogenicity | Comparison of three commercial MIC systems, E test, fastidious antimicrobial susceptibility panel, and FOX fastidious panel, for confirmation of penicillin and cephalosporin resistance in Streptococcus pneumoniae. | Krisher KK, Linscott A. | J Clin Microbiol | 10.1128/jcm.32.9.2242-2245.1994 | 1994 | |
| Pathogenicity | Antipneumococcal activity of neuraminidase inhibiting artocarpin. | Walther E, Richter M, Xu Z, Kramer C, von Grafenstein S, Kirchmair J, Grienke U, Rollinger JM, Liedl KR, Slevogt H, Sauerbrei A, Saluz HP, Pfister W, Schmidtke M. | Int J Med Microbiol | 10.1016/j.ijmm.2014.12.004 | 2015 | |
| Phylogeny | A novel multiresistant Streptococcus pneumoniae serogroup 19 clone from Washington State identified by pulsed-field gel electrophoresis and restriction fragment length patterns. | Luna VA, Jernigan DB, Tice A, Kellner JD, Roberts MC. | J Clin Microbiol | 10.1128/jcm.38.4.1575-1580.2000 | 2000 | |
| Phylogeny | Identification of Enterococcus, Streptococcus, and Staphylococcus by multivariate analysis of proton magnetic resonance spectroscopic data from plate cultures. | Bourne R, Himmelreich U, Sharma A, Mountford C, Sorrell T. | J Clin Microbiol | 10.1128/jcm.39.8.2916-2923.2001 | 2001 | |
| Enzymology | High throughput detection of Coxiella burnetii by real-time PCR with internal control system and automated DNA preparation. | Panning M, Kilwinski J, Greiner-Fischer S, Peters M, Kramme S, Frangoulidis D, Meyer H, Henning K, Drosten C. | BMC Microbiol | 10.1186/1471-2180-8-77 | 2008 | |
| Identification and characterization of a novel family of pneumococcal proteins that are protective against sepsis. | Adamou JE, Heinrichs JH, Erwin AL, Walsh W, Gayle T, Dormitzer M, Dagan R, Brewah YA, Barren P, Lathigra R, Langermann S, Koenig S, Johnson S. | Infect Immun | 10.1128/iai.69.2.949-958.2001 | 2001 | ||
| Metabolism | Mannose-binding lectin binds to a range of clinically relevant microorganisms and promotes complement deposition. | Neth O, Jack DL, Dodds AW, Holzel H, Klein NJ, Turner MW. | Infect Immun | 10.1128/iai.68.2.688-693.2000 | 2000 | |
| Pathogenicity | In vitro activities of U-100592 and U-100766, novel oxazolidinone antibacterial agents. | Zurenko GE, Yagi BH, Schaadt RD, Allison JW, Kilburn JO, Glickman SE, Hutchinson DK, Barbachyn MR, Brickner SJ. | Antimicrob Agents Chemother | 10.1128/aac.40.4.839 | 1996 | |
| Phylogeny | Rapid screening and identification of methicillin-resistant Staphylococcus aureus from clinical samples by selective-broth and real-time PCR assay. | Fang H, Hedin G. | J Clin Microbiol | 10.1128/jcm.41.7.2894-2899.2003 | 2003 | |
| Pathogenicity | Differential induction of pro- and anti-inflammatory cytokines in whole blood by bacteria: effects of antibiotic treatment. | Frieling JT, Mulder JA, Hendriks T, Curfs JH, van der Linden CJ, Sauerwein RW. | Antimicrob Agents Chemother | 10.1128/aac.41.7.1439 | 1997 | |
| Phylogeny | Francisella tularensis molecular typing using differential insertion sequence amplification. | Larson MA, Fey PD, Bartling AM, Iwen PC, Dempsey MP, Francesconi SC, Hinrichs SH. | J Clin Microbiol | 10.1128/jcm.00033-11 | 2011 | |
| Genetics | Draft Genome Sequences of Six Strains of Streptococcus pneumoniae from Serotypes 5, 6A, 6B, 18C, 19A, and 23F. | Jakobsson HE, Salva-Serra F, Thorell K, Karlsson R, Gonzales-Siles L, Boulund F, Engstrand L, Kristiansson E, Moore ER | Genome Announc | 10.1128/genomeA.00125-17 | 2017 | |
| Phylogeny | Evaluation of the antibacterial activity of the methylene chloride extract of Miconia ligustroides, isolated triterpene acids, and ursolic acid derivatives. | Cunha WR, de Matos GX, Souza MG, Tozatti MG, Andrade e Silva ML, Martins CH, da Silva R, Da Silva Filho AA | Pharm Biol | 10.3109/13880200903062648 | 2010 | |
| Enzymology | Evaluation of 4 swab transport systems for the recovery of ATCC and clinical strains with characterized resistance mechanisms. | Morosini MI, Loza E, Gutierrez O, Almaraz F, Baquero F, Canton R | Diagn Microbiol Infect Dis | 10.1016/j.diagmicrobio.2006.02.011 | 2006 |
| #5328 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14378 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #51727 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33774 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68381 | Automatically annotated from API rID32STR . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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