Catonella morbi (CCUG 33640, ATCC 51271)

Name: Catonella morbi (CCUG 33640, ATCC 51271)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 147472

Type strain

Culture col. no. CCUG 33640 ATCC 51271

NCBI tax ID(s) 592026 43997

Special Collections CCUG

Links

Catonella morbi CCUG 33640 is a prokaryote that was isolated from Gingival crevice of adult patient w/periodontitis.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 42890

ATCC 51271,CCUG 33640

@ref 20215

Last LPSN update 2025-12-16 10:05:21

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Catonella

Species Catonella morbi

Full scientific name Catonella morbi Moore and Moore 1994

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	L-lactaldehyde degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	formaldehyde oxidation	100	3 of 3
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	90.91	20 of 22
66794	starch degradation	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	valine metabolism	88.89	8 of 9
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	Entner Doudoroff pathway	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	pyrimidine metabolism	75.56	34 of 45
66794	glycogen biosynthesis	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	degradation of hexoses	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	methionine metabolism	69.23	18 of 26
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	purine metabolism	65.96	62 of 94
66794	oxidative phosphorylation	63.74	58 of 91
66794	d-xylose degradation	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	histidine metabolism	62.07	18 of 29
66794	urea cycle	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	glutamate and glutamine metabolism	60.71	17 of 28
66794	cellulose degradation	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	alanine metabolism	58.62	17 of 29
66794	degradation of pentoses	57.14	16 of 28
66794	propanol degradation	57.14	4 of 7
66794	citric acid cycle	57.14	8 of 14
66794	polyamine pathway	56.52	13 of 23
66794	metabolism of disaccharids	54.55	6 of 11
66794	non-pathway related	52.63	20 of 38
66794	ketogluconate metabolism	50	4 of 8
66794	ribulose monophosphate pathway	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	coenzyme A metabolism	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	suberin monomers biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	lipid metabolism	48.39	15 of 31
66794	tryptophan metabolism	47.37	18 of 38
66794	leucine metabolism	46.15	6 of 13
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	proline metabolism	45.45	5 of 11
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	lysine metabolism	42.86	18 of 42
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	methylglyoxal degradation	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	37.5	3 of 8
66794	pentose phosphate pathway	36.36	4 of 11
66794	ascorbate metabolism	36.36	8 of 22
66794	vitamin B6 metabolism	36.36	4 of 11
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	lipid A biosynthesis	33.33	3 of 9
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	sulfate reduction	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	arginine metabolism	29.17	7 of 24
66794	tetrahydrofolate metabolism	28.57	4 of 14
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	tyrosine metabolism	28.57	4 of 14
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	flavin biosynthesis	26.67	4 of 15
66794	toluene degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	degradation of sugar acids	24	6 of 25
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18
66794	glutathione metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Tooth
#Infection	#Disease	-
#Infection	#Patient	-
#Host	#Human	#Female

Isolation

51652

Sample typeGingival crevice of adult patient w/periodontitis

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM16003v2 assembly for Catonella morbi ATCC 51271	scaffold	GCA_000160035	592026.3	643886188	592026	72.76

Genome browser: GCA_000160035

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	C.morbi 16S rRNA gene	X87151	1467		43997

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Catonella morbi ATCC 51271
NCBI: GCA_000160035

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	77.90	no
125439	motility	BacteriaNetⓘ	yes	81.70	no
125439	gram_stain	BacteriaNetⓘ	variable	84.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Catonella morbi ATCC 51271 ATCC 51271
NCBI: GCA_000160035.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	64.91	no
125438	anaerobic	anaerobicⓘ	yes	82.21	no
125438	aerobic	aerobicⓘ	no	94.43	no
125438	spore-forming	spore-formingⓘ	yes	51.62	no
125438	thermophilic	thermophileⓘ	no	87.06	no
125438	flagellated	motile2+ⓘ	yes	65.36	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of the Oral Microbiome Among Children With Type 1 Diabetes Compared With Healthy Children.	Moskovitz M, Nassar M, Moriel N, Cher A, Faibis S, Ram D, Zangen D, Yassour M, Steinberg D.	Front Microbiol	10.3389/fmicb.2021.756808	2021
	Isolation of potentially novel species expands the genomic and functional diversity of Lachnospiraceae.	Lin X, Hu T, Wu Z, Li L, Wang Y, Wen D, Liu X, Li W, Liang H, Jin X, Xu X, Wang J, Yang H, Kristiansen K, Xiao L, Zou Y.	Imeta	10.1002/imt2.174	2024
Transcriptome	Gene expression of bacterial collagenolytic proteases in root caries.	Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T.	J Oral Microbiol	10.1080/20002297.2018.1424475	2018
Genetics	A phylogenomic view of ecological specialization in the Lachnospiraceae, a family of digestive tract-associated bacteria.	Meehan CJ, Beiko RG.	Genome Biol Evol	10.1093/gbe/evu050	2014
Phylogeny	Insight into the evolution of the histidine triad protein (HTP) family in Streptococcus.	Shao ZQ, Zhang YM, Pan XZ, Wang B, Chen JQ.	PLoS One	10.1371/journal.pone.0060116	2013
	Characterization of Lactococcus lactis phage 949 and comparison with other lactococcal phages.	Samson JE, Moineau S.	Appl Environ Microbiol	10.1128/aem.00796-10	2010
	Isolation and Description of Catonella massiliensis sp. nov., a Novel Catonella Species, Isolated from a Stable Periodontitis Subject.	Antezack A, Boxberger M, La Scola B, Monnet-Corti V.	Pathogens	10.3390/pathogens10030367	2021
Phylogeny	Oribaculum catoniae gen. nov., sp. nov.; Catonella morbi gen. nov., sp. nov.; Hallella seregens gen. nov., sp. nov.; Johnsonella ignava gen. nov., sp. nov.; and Dialister pneumosintes gen. nov., comb. nov., nom. rev., Anaerobic gram-negative bacilli from the human gingival crevice.	Moore LV, Moore WE	Int J Syst Bacteriol	10.1099/00207713-44-2-187	1994

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#51652	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33640
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Catonella morbi (CCUG 33640, ATCC 51271)

Name and taxonomic classification

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000160035

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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