Yersinia enterocolitica (CCUG 33553, NCTC 10460)

Name: Yersinia enterocolitica (CCUG 33553, NCTC 10460)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 147414

Type strain

Culture col. no. CCUG 33553 NCTC 10460

NCBI tax ID(s) 630

Special Collections CCUG

Links

Yersinia enterocolitica CCUG 33553 is a bacterium that was isolated from Chinchilla.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 58375

CCUG 33553,NCTC 10460,CECT 559

@ref 20215

Last LPSN update 2026-05-29 08:41:24

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Yersinia

Species Yersinia enterocolitica

Full scientific name Yersinia enterocolitica (Schleifstein and Coleman 1939) Frederiksen 1964 (Approved Lists 1980)

Synonyms (1)

"Bacterium enterocoliticum"

BacDive ID	Other strains from **Yersinia enterocolitica** (77)	Type strain
23975	Y. enterocolitica YeO3-R1, DSM 23247
23976	Y. enterocolitica 6471/76, DSM 23248
23977	Y. enterocolitica 8081-C, DSM 23249
23978	Y. enterocolitica YeO3-c-trs8-R, DSM 23250
134634	Y. enterocolitica CIP 107202, IP 102
135678	Y. enterocolitica 7794, CIP 72.5
135843	Y. enterocolitica 615.85, CIP 101776
137323	Y. enterocolitica CIP 106676, IP 885
138918	Y. enterocolitica Lucas 212, CIP 65.29
141850	Y. enterocolitica CCUG 7758
141880	Y. enterocolitica CCUG 8050
141888	Y. enterocolitica CCUG 8231
141889	Y. enterocolitica CCUG 8232
141890	Y. enterocolitica CCUG 8234
141891	Y. enterocolitica CCUG 8235
141892	Y. enterocolitica CCUG 8236
141893	Y. enterocolitica CCUG 8237
141894	Y. enterocolitica CCUG 8238, CCUG 4587A
141895	Y. enterocolitica CCUG 8240
141897	Y. enterocolitica CCUG 8243
141898	Y. enterocolitica CCUG 8244
141899	Y. enterocolitica CCUG 8245
141902	Y. enterocolitica CCUG 8248
141903	Y. enterocolitica CCUG 8249
141904	Y. enterocolitica CCUG 8250
141905	Y. enterocolitica CCUG 8251
141906	Y. enterocolitica CCUG 8252
142062	Y. enterocolitica CCUG 10211
142677	Y. enterocolitica CCUG 13741
143058	Y. enterocolitica CCUG 16728
143129	Y. enterocolitica CCUG 17328
143311	Y. enterocolitica CCUG 18381
143626	Y. enterocolitica CCUG 20640
144046	Y. enterocolitica CCUG 22570
144528	Y. enterocolitica CCUG 25567
145642	Y. enterocolitica CCUG 29125
146175	Y. enterocolitica CCUG 30507
146559	Y. enterocolitica CCUG 31436
146630	Y. enterocolitica CCUG 31654
146666	Y. enterocolitica CCUG 31752
147069	Y. enterocolitica CCUG 32786
147209	Y. enterocolitica CCUG 33055, CIP Ye 2705, ATCC 27729, NCTC ...
147972	Y. enterocolitica CCUG 34604
149000	Y. enterocolitica CCUG 36700
149480	Y. enterocolitica CCUG 37816
149508	Y. enterocolitica CCUG 37880
149534	Y. enterocolitica CCUG 37920
149890	Y. enterocolitica CCUG 38621
150217	Y. enterocolitica CCUG 39301
150618	Y. enterocolitica CCUG 41767
150937	Y. enterocolitica CCUG 42789
151100	Y. enterocolitica CCUG 43275
151350	Y. enterocolitica CCUG 43819
152053	Y. enterocolitica CCUG 45643
152197	Y. enterocolitica CCUG 46041
153365	Y. enterocolitica CCUG 49352
153786	Y. enterocolitica CCUG 50971
156498	Y. enterocolitica CCUG 62190
156738	Y. enterocolitica CCUG 64718
169336	Y. enterocolitica Cla-JM-1, DSM 110076
172678	Y. enterocolitica CARE_00001, CIP 111957, IP 42547
172679	Y. enterocolitica CARE_00002, CIP 111958, IP 41598
172680	Y. enterocolitica CARE_00003, CIP 111959, IP 42863
172681	Y. enterocolitica CARE_00004, CIP 111960, IP 39727
172682	Y. enterocolitica CARE_00007, CIP 111963, IP 41365
172683	Y. enterocolitica CARE_00008, CIP 111964, IP 42937
172684	Y. enterocolitica CARE_00009, CIP 111965, IP 39720
172685	Y. enterocolitica CARE_00010, CIP 111966, IP 43284
172686	Y. enterocolitica CARE_00011, CIP 111967, IP 42251
172687	Y. enterocolitica CARE_00012, CIP 111968, IP 39976
172688	Y. enterocolitica CARE_00015, CIP 111971, IP 39285
172689	Y. enterocolitica CARE_00013, CIP 111969, IP 42503
172690	Y. enterocolitica CARE_00014, CIP 111970, IP 39890
172691	Y. enterocolitica CARE_00016, CIP 111972, IP 05342
172692	Y. enterocolitica CARE_00017, CIP 111973, IP 39779
172693	Y. enterocolitica CARE_00021, CIP 111977, IP 35935
172694	Y. enterocolitica CARE_00022, CIP 111978, IP 36813

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		91.8
125439		96.058

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Rodentia (Other)

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
51586	Chinchilla	1960	Denmark	DNK	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	42166_E01 assembly for Yersinia enterocolitica NCTC10460	contig	GCA_900460595	630.238	8020652478	630	77.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 42166_E01 assembly for Yersinia enterocolitica NCTC10460
BV-BRC: 630.238

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.89	no
125439	motility	BacteriaNetⓘ	yes	58.20	no
125439	gram_stain	BacteriaNetⓘ	negative	74.65	no
125439	spore_formation	BacteriaNetⓘ	no	96.06	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Yersinia enterocolitica strain NCTC10460
PATRIC: 630.238

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	96.44	no
125438	spore-forming	spore-formingⓘ	no	91.80	no
125438	aerobic	aerobicⓘ	no	67.95	no
125438	thermophilic	thermophileⓘ	no	99.50	no
125438	flagellated	motile2+ⓘ	yes	77.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Divergence among genes encoding the elongation factor Tu of Yersinia Species.	Isabel S, Leblanc E, Boissinot M, Boudreau DK, Grondin M, Picard FJ, Martel EA, Parham NJ, Chain PS, Bader DE, Mulvey MR, Bryden L, Roy PH, Ouellette M, Bergeron MG.	J Bacteriol	10.1128/jb.01067-08	2008
Proteome	Elucidation of peptide screen for targeted identification of Yersinia pestis by nano-liquid chromatography tandem mass spectrometry.	Rani P, Alam SI, Singh S, Kumar S.	Sci Rep	10.1038/s41598-024-81906-w	2025
Biotechnology	Phytochemical and Functional Diversity of Enzyme-Assisted Extracts from Hippophae rhamnoides L., Aralia cordata Thunb., and Cannabis sativa L.	Januskevice V, Gomes AM, Sousa S, Barbosa JC, Vedor R, Martusevice P, Liaudanskas M, Zvikas V, Viskelis P, Cesoniene L, Balciunaitiene A, Viskelis J, Szonn S, Urbonaviciene D.	Antioxidants (Basel)	10.3390/antiox13080950	2024
	Re-purposing of domestic steam disinfectors within the hospital-at-home setting.	Millar BC, Stirling J, Maguire M, Moore RE, Murphy A, Moore JE.	Infect Dis Health	10.1016/j.idh.2020.09.005	2021
Biotechnology	Soleris®Enterobacteriaceae for the Detection of Enterobacteriaceae in Select Foods: AOAC Performance Tested MethodSM 121901.	Alles S, Roman B, Betts G, Jordan S, Everis L, Montei C, Biswas P, Mozola M, Donofrio R.	J AOAC Int	10.1093/jaoacint/qsaa001	2020
	Venatorbacter cucullus gen. nov sp. nov a novel bacterial predator.	Saeedi A, Cummings NJ, McLean D, Connerton IF, Connerton PL.	Sci Rep	10.1038/s41598-021-00865-8	2021
Metabolism	Restart of exponential growth of cold-shocked Yersinia enterocolitica occurs after down-regulation of cspA1/A2 mRNA.	Neuhaus K, Rapposch S, Francis KP, Scherer S.	J Bacteriol	10.1128/jb.182.11.3285-3288.2000	2000
Enzymology	Sensitive in situ monitoring of a recombinant bioluminescent Yersinia enterocolitica reporter mutant in real time on Camembert cheese.	Maoz A, Mayr R, Bresolin G, Neuhaus K, Francis KP, Scherer S.	Appl Environ Microbiol	10.1128/aem.68.11.5737-5740.2002	2002
Biotechnology	Microbial diagnostic microarray for food- and water-borne pathogens.	Kostic T, Stessl B, Wagner M, Sessitsch A, Bodrossy L.	Microb Biotechnol	10.1111/j.1751-7915.2010.00176.x	2010
	Further observations upon HLA-B27, Yersinia enterocolitica, and ankylosing spondylitis.	Pease PE, Balmer SE, Tallack JE, Chahal H, Ibbotson J, Bartlett LR, Lane M, Allan RN.	Ann Rheum Dis	10.1136/ard.45.6.526-b	1986
Metabolism	SdiA of Salmonella enterica is a LuxR homolog that detects mixed microbial communities.	Michael B, Smith JN, Swift S, Heffron F, Ahmer BM.	J Bacteriol	10.1128/jb.183.19.5733-5742.2001	2001
Phylogeny	Novel real-time PCR assay for simultaneous detection and differentiation of Clostridium chauvoei and Clostridium septicum in clostridial myonecrosis.	Halm A, Wagner M, Kofer J, Hein I.	J Clin Microbiol	10.1128/jcm.01975-09	2010
	Pathogenic Yersinia species carry a novel, cold-inducible major cold shock protein tandem gene duplication producing both bicistronic and monocistronic mRNA.	Neuhaus K, Francis KP, Rapposch S, Gorg A, Scherer S.	J Bacteriol	10.1128/jb.181.20.6449-6455.1999	1999
	HLA B27, Yersinia enterocolitica, and ankylosing spondylitis.	Pease P, England J, Tyler R, Mackintosh P.	Ann Rheum Dis	10.1136/ard.39.4.415	1980
Biotechnology	A real-time PCR assay for the detection of Campylobacter jejuni in foods after enrichment culture.	Sails AD, Fox AJ, Bolton FJ, Wareing DR, Greenway DL.	Appl Environ Microbiol	10.1128/aem.69.3.1383-1390.2003	2003
	Bacterial characteristics determining the potential host range of bacteriophage T4.	Dawes J.	J Bacteriol	10.1128/jb.127.2.1024-1025.1976	1976
Enzymology	Factors affecting the value of a simple biochemical scheme for identifying Enterobacteriaceae: the reproducible recognition of biotypes.	Barr JG, Mahood RJ, Curry KP.	J Clin Pathol	10.1136/jcp.30.6.495	1977

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#51586	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33553
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Yersinia enterocolitica (CCUG 33553, NCTC 10460)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900460595

Genome-based predictions

Predictions

Literature

Literature

References

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