Bordetella parapertussis CCUG 33551 is a bacterium that was isolated from Cough plate.
genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Betaproteobacteria |
| Order Burkholderiales |
| Family Alcaligenaceae |
| Genus Bordetella |
| Species Bordetella parapertussis |
| Full scientific name Bordetella parapertussis (Eldering and Kendrick 1938) Moreno-López 1952 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 97.9 |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||
| @ref | 51585 | ||||||||||||||||||||||||||||||||||||
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| 51585 | Sample typeCough plate |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 45813_D01 assembly for Bordetella parapertussis NCTC10853 | contig | 519 | 78.15 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 88.50 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 78.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 90.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 96.98 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.24 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 89.05 | no |
| 125438 | aerobic | aerobicⓘ | yes | 87.34 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.57 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 86.27 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Outer-Membrane-Vesicle-Associated O Antigen, a Crucial Component for Protecting Against Bordetella parapertussis Infection. | Bottero D, Zurita ME, Gaillard ME, Carriquiriborde F, Martin Aispuro P, Elizagaray M, Bartel E, Castuma C, Hozbor D. | Front Immunol | 10.3389/fimmu.2018.02501 | 2018 | ||
| Evaluation of amplification targets for the specific detection of Bordetella pertussis using real-time polymerase chain reaction. | Hasan MR, Tan R, Al-Rawahi GN, Thomas E, Tilley P. | Can J Infect Dis Med Microbiol | 10.1155/2014/763128 | 2014 | ||
| Enzymology | Development and evaluation of real-time PCR assays for the detection of the newly identified KI and WU polyomaviruses. | Bialasiewicz S, Whiley DM, Lambert SB, Gould A, Nissen MD, Sloots TP. | J Clin Virol | 10.1016/j.jcv.2007.07.015 | 2007 | |
| Enzymology | Rapid-cycle PCR method to detect Bordetella pertussis that fulfills all consensus recommendations for use of PCR in diagnosis of pertussis. | Farrell DJ, McKeon M, Daggard G, Loeffelholz MJ, Thompson CJ, Mukkur TK. | J Clin Microbiol | 10.1128/jcm.38.12.4499-4502.2000 | 2000 | |
| Enzymology | Nested duplex PCR to detect Bordetella pertussis and Bordetella parapertussis and its application in diagnosis of pertussis in nonmetropolitan Southeast Queensland, Australia. | Farrell DJ, Daggard G, Mukkur TK. | J Clin Microbiol | 10.1128/jcm.37.3.606-610.1999 | 1999 | |
| Development and evaluation of a loop-mediated isothermal amplification method for rapid diagnosis of Bordetella pertussis infection. | Kamachi K, Toyoizumi-Ajisaka H, Toda K, Soeung SC, Sarath S, Nareth Y, Horiuchi Y, Kojima K, Takahashi M, Arakawa Y. | J Clin Microbiol | 10.1128/jcm.44.5.1899-1902.2006 | 2006 | ||
| Enzymology | Validation of nested Bordetella PCR in pertussis vaccine trial. | Reizenstein E, Lindberg L, Mollby R, Hallander HO. | J Clin Microbiol | 10.1128/jcm.34.4.810-815.1996 | 1996 | |
| Monoclonal antibody-based sandwich enzyme-linked immunosorbent assay for detection of Bordetella pertussis filamentous hemagglutinin. | Gustafsson B, Askelof P. | J Clin Microbiol | 10.1128/jcm.26.10.2077-2082.1988 | 1988 | ||
| Enzymology | Nested PCR optimized for detection of Bordetella pertussis in clinical nasopharyngeal samples. | Backman A, Johansson B, Olcen P. | J Clin Microbiol | 10.1128/jcm.32.10.2544-2548.1994 | 1994 | |
| Enzymology | Multiplex PCR-based assay for detection of Bordetella pertussis in nasopharyngeal swab specimens. | Wadowsky RM, Michaels RH, Libert T, Kingsley LA, Ehrlich GD. | J Clin Microbiol | 10.1128/jcm.34.11.2645-2649.1996 | 1996 | |
| Bacteriological variation among Bordetella bronchiseptica isolates from dogs and other species. | Bemis DA, Greisen HA, Appel MJ. | J Clin Microbiol | 10.1128/jcm.5.4.471-480.1977 | 1977 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #51585 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33551 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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