Name: Lactococcus plantarum 5L
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14706

Type strain:

Species: Lactococcus plantarum

Strain Designation: 5L

Culture col. no.: DSM 20686, ATCC 43199, NCDO 1869, CCUG 39180, JCM 11056, CCM 4542, CIP 102506, HAMBI 1593, KCTC 3645, LMG 8517, NBRC 100936, NCIMB 11945, VTT E-90411

Strain history: CIP <- 1986, NCFB <- 1966, J.J. Cavett: strain 5L, Streptococcus cremoris

NCBI tax ID(s): 1348632 (strain), 1365 (species)

SI-ID 3459

LMG 8517, ATCC 43199, DSM 20686, NCFB 1869, NCIMB 11945, CCUG 39180, CIP 102506, NCIB 11945, JCM 11056, NCDO1869, CCM4542, NCDO 1960, KCTC 3645, NBRC 100936, HAMBI 1593, CNCTC 6912, VTT E-90411

Special Collections

Other strains from Lactococcus plantarum

Section

Lactococcus plantarum 5L is a facultative anaerobe, Gram-positive bacterium that was isolated from frozen peas.

Gram-positive
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Lactococcus*
	Species	**Lactococcus plantarum**
	Full Scientific Name (LPSN)	Lactococcus plantarum (Collins et al. 1984) Schleifer et al. 1986

Synonym

Streptococcus plantarum

Information on morphological and physiological properties Morphology

[Ref.: #121864]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.347

[Ref.: #121864]	Cell shape	coccus-shaped

[Ref.: #121864]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9008]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #9008]

Culture medium growth

[Ref.: #9008]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9008]

Culture medium composition

expand / minimize

[Ref.: #38973]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #38973]

Culture medium growth

[Ref.: #38973]

Culture medium composition

expand / minimize

[Ref.: #121864]

Culture medium

CIP Medium 72

[Ref.: #121864]

Culture medium growth

[Ref.: #121864]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121864]

Culture medium

CIP Medium 29

[Ref.: #121864]

Culture medium growth

[Ref.: #121864]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #9008]		growth	30 °C
[Ref.: #38973]		growth	30 °C
[Ref.: #54687]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121864]		growth	10-37 °C
[Ref.: #121864]	no	growth	41 °C
[Ref.: #121864]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121864]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #121864]		NaCl		growth	6.5	%

[Ref.: #9008]	Murein short key	A11.18
[Ref.: #9008]	Murein types	A3alpha L-Lys-L-Ser-L-Ala

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121864]	hippurate ChEBI	+	hydrolysis
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #121864]	nitrate ChEBI	-	reduction
[Ref.: #121864]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #121864]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121864]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121864]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121864]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121864]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121864]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121864]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121864]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #9008]	14724	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	+	-	+	-	-	-	-	+/-	+	-	-	-	-	-	-	-	-	-
[Ref.: #121864]	8992	not determinedn.d.	+/-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+	+	-	+	+	+/-	+	+	+	+	+	-	-	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121864]	7109	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9008]	Sample type/isolated from	frozen peas

[Ref.: #54687]	Sample type/isolated from	Frozen peas

[Ref.: #67770]	Sample type/isolated from	Frozen peas

[Ref.: #121864]	Sample type/isolated from	Food, Frozen peas
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Food
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)
#Condition	#Psychrophilic (<10°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC145561 (>99% sequence identity) for Lactococcus plantarum subclade from Microbeatlas

Aquatic Samples	1614
Soil Samples	1086
Animal Samples	5833
Plant Samples	376
Total Samples	8909

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9008]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121864]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactococcus plantarum gene for 16S ribosomal RNA, partial sequence, strain: JCM 11056	LC145561	1488	GenBank ENA	1365 tax ID
[Ref.: #20218]	Lactococcus plantarum strain DSM 20686 16S ribosomal RNA gene, partial sequence	EF694029	1433	GenBank ENA	1365 tax ID	*
[Ref.: #20218]	Lactococcus plantarum strain DSM 20686 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	HM241919	575	GenBank ENA	1365 tax ID	*
[Ref.: #20218]	Lactococcus plantarum strain NIZO2426T 16S ribosomal RNA gene, partial sequence	EU091464	646	GenBank ENA	1365 tax ID	*
[Ref.: #20218]	Lactococcus plantarum gene for 16S rRNA, partial sequence, strain: NBRC 100936	AB681297	1474	GenBank ENA	1365 tax ID	*
[Ref.: #20218]	Lactococcus plantarum 16S ribosomal RNA	X54259	1473	GenBank ENA	1365 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactococcus plantarum NBRC 100936	GCA_001591745	contig	GenBank ENA	1348632 tax ID
[Ref.: #67770]	Lactococcus plantarum DSM 20686	GCA_002441715	contig	GenBank ENA	1365 tax ID
[Ref.: #66792]	Lactococcus plantarum NBRC 100936	1348632.3	wgs	PATRIC	1348632 tax ID	*
[Ref.: #66792]	Lactococcus plantarum strain DSM 20686	1365.4	wgs	PATRIC	1365 tax ID	*
[Ref.: #66792]	Lactococcus plantarum DSM 20686	2903266210	draft	JGI IMG/M	1365 tax ID	*
[Ref.: #66792]	Lactococcus plantarum NBRC 100936	2731957665	draft	JGI IMG/M	1348632 tax ID	*

[Ref.: #9008]

GC-content

36.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactococcus plantarum strain DSM 20686 PATRIC: 1365.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactococcus plantarum NBRC 100936 PATRIC: 1348632.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.347	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.954	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.275	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.547	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.467	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94	no

Availability in culture collections External links

[Ref.: #9008]

Culture collection no.

DSM 20686, ATCC 43199, NCDO 1869, CCUG 39180, JCM 11056, CCM 4542, CIP 102506, HAMBI 1593, KCTC 3645, LMG 8517, NBRC 100936, NCIMB 11945, VTT E-90411

[Ref.: #83825]

SI-ID 3459

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactococcus insecticola sp. nov. and Lactococcus hodotermopsidis sp. nov., isolated from the gut of the wood-feeding lower termite Hodotermopsis sjostedti.	Noda S, Koyama F, Aihara C, Ikeyama N, Yuki M, Ohkuma M, Sakamoto M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004309	2020	*
Phylogeny	Streptococcus garvieae sp. nov. and Streptococcus plantarum sp. nov.	Collins MD, Farrow JA, Phillips BA, Kandler O	J Gen Microbiol	10.1099/00221287-129-11-3427	1983	*

References

#9008

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20686

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38973 ; Curators of the CIP;
#54687 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39180

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83825

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3459.1 )

#121864 Collection of Institut Pasteur ; Curators of the CIP; CIP 102506
* These data were automatically processed and therefore are not curated

Change proposal

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Search for species Lactococcus plantarum in external resources:
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Lactococcus plantarum strain DSM 20686

Lactococcus plantarum NBRC 100936

Change proposal

Change proposal