Name: Lactococcus lactis subsp. hordniae HC-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14693

Type strain:

Species: Lactococcus lactis subsp. hordniae

Strain Designation: HC-1

Culture col. no.: DSM 20450, ATCC 29071, NCDO 2181, CCUG 32210, JCM 1180, CCM 4541, CIP 102973, HAMBI 1590, KCTC 3768, LMG 8520, NBRC 100931, NCFB 2181, NCIMB 702181, VTT E-90394

Strain history: CIP <- 1987, NCFB <- 1978, M.E. Sharpe, Reading, UK <- 1978, C.I. Kado: strain HC-1-1, Lactobacillus hordniae

NCBI tax ID(s): 1348656 (strain), 203404 (subspecies)

SI-ID 92327

LMG 8520, ATCC 29071, CCUG 32210, DSM 20450, NCFB 2181, NCDO 2181, CIP 102973, JCM 1180, NCIMB 702181, CCM 4541, KCTC 3768, NBRC 100931, HAMBI 1590, VTT E-90394

Other strains from Lactococcus lactis subsp. hordniae

L. lactis subsp. hordniae CIP 102974, NCDO 2182, JCM 11040

Section

Lactococcus lactis subsp. hordniae HC-1 is a mesophilic bacterium that was isolated from leafhopper .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Lactococcus*
	Species	**Lactococcus lactis subsp. hordniae**
	Full Scientific Name (LPSN)	Lactococcus lactis subsp. hordniae (ex Latorre-Guzman et al. 1977) Schleifer et al. 1986

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96.18

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8822]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8822]

Culture medium growth

[Ref.: #8822]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8822]

Culture medium composition

expand / minimize

[Ref.: #38744]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #38744]

Culture medium growth

[Ref.: #38744]

Culture medium composition

expand / minimize

[Ref.: #120526]

Culture medium

CIP Medium 40

[Ref.: #120526]

Culture medium growth

[Ref.: #120526]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8822]	growth	30 °C
[Ref.: #38744]	growth	30 °C
[Ref.: #50900]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #8822]	Temperature range	mesophilic
[Ref.: #38744]	Temperature range	mesophilic
[Ref.: #50900]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

[Ref.: #8822]	Murein short key	A11.31
[Ref.: #8822]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	arginine ChEBI	+	hydrolysis	* from API rID32STR
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	hippurate ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	lactose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	maltose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	pullulan ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	raffinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	trehalose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68381]		acetoin ChEBI	yes	* from API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68381]		acetoin ChEBI	+	* from API rID32STR

	Enzyme	Enzyme activity	EC number
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #68381]	alkaline phosphatase	-	3.1.3.1	* from API rID32STR
[Ref.: #68381]	alpha-galactosidase	-	3.2.1.22	* from API rID32STR
[Ref.: #68381]	arginine dihydrolase	+	3.5.3.6	* from API rID32STR
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR
[Ref.: #68381]	beta-glucosidase	+	3.2.1.21	* from API rID32STR
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #68381]	glycyl tryptophan arylamidase	-		* from API rID32STR
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #50900]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	55.3	17.824
C16:0	22.1	16
C18:2 ω6,9c/C18:0 ANTE	9.6	17.724
C18:1 ω9c	4.5	17.769
C14:0	3.2	14
C18:0	2.4	18
C16:1 ω7c	1.6	15.819
C16:1 ω7c/C15:0 ISO 2OH	1.2	15.85

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #8822]	10670	+	+	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8822]	Sample type/isolated from	leafhopper (Hordnia circellata)
[Ref.: #8822]	Host species	Hordnia circellata

[Ref.: #50900]	Sample type/isolated from	Leaf hopper

[Ref.: #67770]	Sample type/isolated from	Leaf hopper (Hordnia circellata)
[Ref.: #67770]	Host species	Hordnia circellata

[Ref.: #120526]	Sample type/isolated from	Other, Leafhopper
[Ref.: #120526]	Geographic location (country and/or sea, region)	California
[Ref.: #120526]	Country	United States of America
[Ref.: #120526]	Country ISO 3 Code	USA
[Ref.: #120526]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC065038 (>99% sequence identity) for Lactococcus from Microbeatlas

Aquatic Samples	13841
Soil Samples	7135
Animal Samples	132033
Plant Samples	4677
Total Samples	157686

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8822]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120526]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactococcus lactis subsp. hordniae gene for 16S ribosomal RNA, partial sequence, strain: JCM 1180	LC065038	1456	ENA	203404 tax ID
[Ref.: #20218]	Lactococcus lactis subsp. hordniae strain KCTC 3768 16S ribosomal RNA gene, partial sequence	EF694031	1444	ENA	203404 tax ID	*
[Ref.: #20218]	Lactococcus lactis subsp. lactis strain KCTC 3768 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	HM241926	515	ENA	1360 tax ID	*
[Ref.: #20218]	Lactococcus lactis subsp. hordniae gene for 16S rRNA, partial sequence, strain: NBRC 100931	AB681293	1472	ENA	203404 tax ID	*
[Ref.: #20218]	Lactococcus lactis subsp. hordniae gene for 16S rRNA, partial sequence, strain: NCDO 2181T	AB100804	1499	ENA	203404 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactococcus lactis subsp. hordniae CCUG 32210T	GCA_008692945	contig	GenBank	203404 tax ID
[Ref.: #66792]	Lactococcus lactis subsp. hordniae NBRC 100931	GCA_001591725	contig	GenBank	1348656 tax ID	*
[Ref.: #66792]	Lactococcus lactis subsp. hordniae DSM 20450	GCA_002441785	contig	GenBank	203404 tax ID	*
[Ref.: #66792]	Lactococcus lactis subsp. hordniae NBRC 100931	1348656.3	wgs	PATRIC	1348656 tax ID	*
[Ref.: #66792]	Lactococcus lactis subsp. hordniae strain DSM 20450	203404.4	wgs	PATRIC	203404 tax ID	*
[Ref.: #66792]	Lactococcus lactis subsp. lactis strain LMG8520	1360.106	wgs	PATRIC	1360 tax ID	*

[Ref.: #8822]	GC-content	35.2 mol%
[Ref.: #8822]	GC-content	32.8 mol%
[Ref.: #67770]	GC-content	31.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactococcus lactis subsp. lactis strain LMG8520 PATRIC: 1360.106
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactococcus lactis subsp. hordniae NBRC 100931 PATRIC: 1348656.3
[Ref.: #69480]	motile	no	95.742	no
[Ref.: #69480]	gram-positive	yes	95.85	no
[Ref.: #69480]	anaerobic	no	95.751	no
[Ref.: #69480]	halophile	yes	76.019	no
[Ref.: #69480]	spore-forming	no	92.591	no
[Ref.: #69480]	thermophile	no	99.824	yes
[Ref.: #69480]	glucose-util	yes	91.137	no
[Ref.: #69480]	aerobic	no	98.124	no
[Ref.: #69480]	flagellated	no	97.094	no
[Ref.: #69480]	glucose-ferment	yes	86.369	no

Availability in culture collections External links

[Ref.: #8822]

Culture collection no.

DSM 20450, ATCC 29071, NCDO 2181, CCUG 32210, JCM 1180, CCM 4541, CIP 102973, HAMBI 1590, KCTC 3768, LMG 8520, NBRC 100931, NCFB 2181, NCIMB 702181, VTT E-90394

[Ref.: #83816]

SI-ID 92327

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactococcus kimchii sp. nov., a new lactic acid bacterium isolated from kimchi.	Pheng S, Han HL, Park DS, Chung CH, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.003782	2020	*

References

#8822

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20450

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38744 ; Curators of the CIP;
#50900 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32210

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68381

Automatically annotated from API rID32STR .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83816

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92327.1 )

#120526 Collection of Institut Pasteur ; Curators of the CIP; CIP 102973
* These data were automatically processed and therefore are not curated

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Lactococcus lactis subsp. lactis strain LMG8520

Lactococcus lactis subsp. hordniae NBRC 100931

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