Lactococcus garvieae subsp. garvieae (DSM 6783, ATCC 49156, CIP 104369)

Name: Lactococcus garvieae subsp. garvieae (DSM 6783, ATCC 49156, CIP 104369)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14683

Type strain

Strain Designation YT-3

Culture col. no. DSM 6783 ATCC 49156 CIP 104369 YT-3 JCM 8735 4 more

NCBI tax ID(s) 1890280

Special Collections DSMZ JCM CIP

Links

Lactococcus garvieae subsp. garvieae YT-3 is a facultative anaerobe, mesophilic, Gram-positive human pathogen that was isolated from kidney of yellowtail.

Gram-positive coccus-shaped facultative anaerobe mesophilic human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92580

LMG 12889,ATCC 49156,CIP 104369,DSM 6783,JCM 8735,NCIMB 13208,CECT 4828,CECT 5274

@ref 20215

Last LPSN update 2025-12-16 09:50:25

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Streptococcaceae

Genus Lactococcus

Species Lactococcus garvieae subsp. garvieae

Full scientific name Lactococcus garvieae subsp. garvieae (Collins et al. 1984) Varsha and Nampoothiri 2016

BacDive ID	Other strains from Lactococcus garvieae subsp. garvieae (1)	Type strain
14686	L. garvieae subsp. garvieae 0159, O159, DSM 20684, ATCC 43921, JCM 10343, ... (type strain)

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119537	positive	coccus-shaped
125438			92
125438	positive		90.393

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2816	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
34688	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
119537	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2816	positive	growth	37	mesophilic
34688	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119537	facultative anaerobe
125439	microaerophile	94.9

Murein

@ref	Murein short key	Type
2816	A11.12	A3alpha L-Lys-L-Ala₂-Gly-L-Ala

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68381	29016 ChEBI	arginine	+	hydrolysis	from API rID32STR
68380	29016 ChEBI	arginine	+	hydrolysis	from API rID32A
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68381	16899 ChEBI	D-mannitol	+	builds acid from	from API rID32STR
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68381	17716 ChEBI	lactose	-	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68381	320055 ChEBI	methyl beta-D-glucopyranoside	+	builds acid from	from API rID32STR
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
119537	17632 ChEBI	nitrate	-	reduction
119537	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	+	builds acid from	from API 50CH acid
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68381	17992 ChEBI	sucrose	-	builds acid from	from API rID32STR
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite
68381	15688 ChEBI	acetoin	from API rID32STR
68380	35581 ChEBI	indole	from API rID32A
119537	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68381	15688 ChEBI	acetoin	+		from API rID32STR
68380	35581 ChEBI	indole		-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68381	Alanyl-Phenylalanyl-Proline arylamidase	+		from API rID32STR
68381	alkaline phosphatase	-	3.1.3.1	from API rID32STR
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68381	arginine dihydrolase	+	3.5.3.6	from API rID32STR
68380	arginine dihydrolase	+	3.5.3.6	from API rID32A
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68382	beta-galactosidase	-	3.2.1.23	from API zym
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68382	beta-glucosidase	+	3.2.1.21	from API zym
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
119537	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	+		from API rID32A
68381	glycyl tryptophan arylamidase	-		from API rID32STR
68380	histidine arylamidase	+		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68382	leucine arylamidase	+	3.4.11.1	from API zym
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119537	oxidase	-
68380	phenylalanine arylamidase	+		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68380	serine arylamidase	+		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	+		from API rID32A
68381	urease	-	3.5.1.5	from API rID32STR
119537	urease	-	3.5.1.5
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119537	-	-	-	+	-	+	-	-	-	+	+	+	-	-	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119537	not determinedn.d.	+	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	+	+	+	+	+	+	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	+

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
2816	-	+	-	-	-	+/-	+	-	-	+	+	-	-	-	-	-	-	+	-	+/-	+	+	+	+	+	+	+	-	+

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
2816	+	+	-	-	-	-	-	+	-	-	+	-	-	-	-	-	+	+	-	+/-	-	-	-	-	-	+	-	-	+	-	-	-
2816	+	+	-	-	-	-	-	+	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	-	-	+	-	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Fishes	-
#Host Body-Site	#Urogenital tract	#Kidney

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2816	kidney of yellowtail	Kochi	Japan	JPN	Asia
67770	Kidney of yellowtail
119537	Kidney of yellowtail

Taxonmaps

69479

Global distribution of 16S sequence AB026843 (>99% sequence identity) for Lactococcus from Microbeatlas

Aquatic Samples	8187
Soil Samples	3482
Animal Samples	81994
Plant Samples	2267
Total Samples	95930

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
2816			2	Risk group (German classification) According to TRBA 466
119537			2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM26992v1 assembly for Lactococcus garvieae ATCC 49156	complete	GCA_000269925	420889.6	2511231101	420889	99.11
67770	Lact_garv_ATCC49156_V2 assembly for Lactococcus garvieae ATCC 49156	contig	GCA_000407645		2545824646	420889	77.76
67770	Lact_garv_ATCC49156_V1 assembly for Lactococcus garvieae ATCC 49156	scaffold	GCA_000407125		2541047486	420889	75.75

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Lactococcus garvieae gene for 16S ribosomal RNA	AB026843	1007		420889
20218	Enterococcus seriolicida 16S ribosomal RNA (16S rRNA)	L32813	1497		1363

GC content

@ref	GC-content (mol%)	Method
2816	44.0	thermal denaturation, midpoint method (Tm)
67770	44	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactococcus garvieae ATCC 49156
NCBI: GCA_000407125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	55.80	no
125439	motility	BacteriaNetⓘ	no	57.50	no
125439	gram_stain	BacteriaNetⓘ	variable	88.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	94.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactococcus garvieae ATCC 49156 ATCC 49156
NCBI: GCA_000407125.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.39	no
125438	anaerobic	anaerobicⓘ	no	88.44	no
125438	aerobic	aerobicⓘ	no	96.99	yes
125438	spore-forming	spore-formingⓘ	no	83.55	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Feed Insects as a Reservoir of Granadaene-Producing Lactococci.	Neuzil-Bunesova V, Ramirez Garcia A, Modrackova N, Makovska M, Sabolova M, Sproer C, Bunk B, Blom J, Schwab C.	Front Microbiol	10.3389/fmicb.2022.848490	2022
Genetics	Complete genome sequence and description of Lactococcus garvieae M14 isolated from Algerian fermented milk.	Moumene M, Drissi F, Croce O, Djebbari B, Robert C, Angelakis E, Benouareth DE, Raoult D, Merhej V.	New Microbes New Infect	10.1016/j.nmni.2016.01.009	2016
	A Complementary Isothermal Amplification Method to the U.S. EPA Quantitative Polymerase Chain Reaction Approach for the Detection of Enterococci in Environmental Waters.	Kolm C, Martzy R, Brunner K, Mach RL, Krska R, Heinze G, Sommer R, Reischer GH, Farnleitner AH.	Environ Sci Technol	10.1021/acs.est.7b01074	2017
Genetics	Antimicrobial susceptibility and genomic characterization of Lactococcus formosensis, Lactococcus garvieae, and Lactococcus petauri in Hong Kong.	Chan Y-X, Cao H, Yau C-Y, Li X, Chow K-H, Ho P-L.	Microbiol Spectr	10.1128/spectrum.00101-25	2025
	Complete Genome Sequence of Lactococcus garvieae MS210922A, Isolated from Farmed Greater Amberjack (Seriola dumerili) in Japan.	Akmal M, Yoshida T, Nishiki I.	Microbiol Resour Announc	10.1128/mra.00890-22	2022
Pathogenicity	Comparative Genomic Analyses of Lactococcus garvieae Isolated from Bovine Mastitis in China.	Lin Y, Han J, Barkema HW, Wang Y, Gao J, Kastelic JP, Han B, Qin S, Deng Z.	Microbiol Spectr	10.1128/spectrum.02995-22	2023
	Genome Sequences of Lactococcus garvieae and Lactococcus petauri Strains Isolated from Traditional Montenegrin Brine Cheeses.	Martinovic A, Cabal A, Nisic A, Sucher J, Stoger A, Allerberger F, Ruppitsch W.	Microbiol Resour Announc	10.1128/mra.00546-21	2021
Genetics	Genomic investigation of Lactococcus formosensis, Lactococcus garvieae, and Lactococcus petauri reveals differences in species distribution by human and animal sources.	Chan Y-X, Cao H, Jiang S, Li X, Fung K-K, Lee C-H, Sridhar S, Chen JH-K, Ho P-L.	Microbiol Spectr	10.1128/spectrum.00541-24	2024
	Determination of virulence associated immunogenic proteins in some of Lactococcus garvieae strains.	Yesiltas MC, Altinok I, Ozturk RC.	Vet Res Forum	10.30466/vrf.2018.89527.2164	2019
	Serotypes, virulence genes and polymorphism of capsule gene cluster in Lactococcus garvieae isolated from diseased rainbow trout (Oncorhynchus mykiss) and mugger crocodile (Crocodylus palustris) in Iran.	Salighehzadeh R, Sharifiyazdi H, Akhlaghi M, Soltanian S.	Iran J Vet Res		2020
Genetics	Comparative genomics and evolutionary analysis of Lactococcus garvieae isolated from human endocarditis.	Frances-Cuesta C, Ansari I, Fernandez-Garayzabal JF, Gibello A, Gonzalez-Candelas F.	Microb Genom	10.1099/mgen.0.000771	2022
	Native valve endocarditis caused by Lactococcus garvieae: an emerging human pathogen.	Lim FH, Jenkins DR.	BMJ Case Rep	10.1136/bcr-2017-220116	2017
Enzymology	Detection of virulence factors of South African Lactococcus garvieae isolated from rainbow trout, Oncorhynchus mykiss (Walbaum).	Meyburgh CM, Bragg RR, Boucher CE.	Onderstepoort J Vet Res	10.4102/ojvr.v85i1.1568	2018
Genetics	New Insight into Antimicrobial Compounds from Food and Marine-Sourced Carnobacterium Species through Phenotype and Genome Analyses.	Begrem S, Ivaniuk F, Gigout-Chevalier F, Kolypczuk L, Bonnetot S, Leroi F, Grovel O, Delbarre-Ladrat C, Passerini D.	Microorganisms	10.3390/microorganisms8071093	2020
	Characterization of prophages of Lactococcus garvieae.	Eraclio G, Fortina MG, Labrie SJ, Tremblay DM, Moineau S.	Sci Rep	10.1038/s41598-017-02038-y	2017
Genetics	MP4: a machine learning based classification tool for prediction and functional annotation of pathogenic proteins from metagenomic and genomic datasets.	Gupta A, Malwe AS, Srivastava GN, Thoudam P, Hibare K, Sharma VK.	BMC Bioinformatics	10.1186/s12859-022-05061-7	2022
	Comparative Genomic Analysis of Lactococcus garvieae Strains Isolated from Different Sources Reveals Candidate Virulence Genes.	Miyauchi E, Toh H, Nakano A, Tanabe S, Morita H.	Int J Microbiol	10.1155/2012/728276	2012
Genetics	Complete genome sequence and comparative analysis of the fish pathogen Lactococcus garvieae.	Morita H, Toh H, Oshima K, Yoshizaki M, Kawanishi M, Nakaya K, Suzuki T, Miyauchi E, Ishii Y, Tanabe S, Murakami M, Hattori M.	PLoS One	10.1371/journal.pone.0023184	2011
	Comparative Genomics and In Vitro Plant Growth Promotion and Biocontrol Traits of Lactic Acid Bacteria from the Wheat Rhizosphere.	Strafella S, Simpson DJ, Yaghoubi Khanghahi M, De Angelis M, Ganzle M, Minervini F, Crecchio C.	Microorganisms	10.3390/microorganisms9010078	2020
Phylogeny	Lactococcus garvieae: where is it from? A first approach to explore the evolutionary history of this emerging pathogen.	Ferrario C, Ricci G, Milani C, Lugli GA, Ventura M, Eraclio G, Borgo F, Fortina MG.	PLoS One	10.1371/journal.pone.0084796	2013
	Oral administration of live Lactococcus lactis C59 suppresses IgE antibody production in ovalbumin-sensitized mice via the regulation of interleukin-4 production.	Yoshida A, Aoki R, Kimoto-Nira H, Kobayashi M, Kawasumi T, Mizumachi K, Suzuki C.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2010.00777.x	2011
	Improved Draft Genome Sequence of Clostridium pasteurianum Strain ATCC 6013 (DSM 525) Using a Hybrid Next-Generation Sequencing Approach.	Pyne ME, Utturkar S, Brown SD, Moo-Young M, Chung DA, Chou CP.	Genome Announc	10.1128/genomea.00790-14	2014
	Comparative pathogenomics of bacteria causing infectious diseases in fish.	Sudheesh PS, Al-Ghabshi A, Al-Mazrooei N, Al-Habsi S.	Int J Evol Biol	10.1155/2012/457264	2012
Genetics	Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species.	Verce M, De Vuyst L, Weckx S.	Front Microbiol	10.3389/fmicb.2019.00479	2019
Metabolism	The maltose ABC transporter in Lactococcus lactis facilitates high-level sensitivity to the circular bacteriocin garvicin ML.	Gabrielsen C, Brede DA, Hernandez PE, Nes IF, Diep DB.	Antimicrob Agents Chemother	10.1128/aac.00314-12	2012
Phylogeny	Phenotypic and phylogenetic evidence for a close relationship between Lactococcus garvieae and Enterococcus seriolicida.	Domenech A, Prieta J, Fernandez-Garayzabal JF, Collins MD, Jones D, Dominguez L.	Microbiologia		1993
	Identification of Novel Raft Marker Protein, FlotP in Bacillus anthracis.	Somani VK, Aggarwal S, Singh D, Prasad T, Bhatnagar R.	Front Microbiol	10.3389/fmicb.2016.00169	2016
Phylogeny	Determination of 16S rRNA sequences of enterococci and application to species identification of nonmotile Enterococcus gallinarum isolates.	Patel R, Piper KE, Rouse MS, Steckelberg JM, Uhl JR, Kohner P, Hopkins MK, Cockerill FR, Kline BC.	J Clin Microbiol	10.1128/jcm.36.11.3399-3407.1998	1998
	Immunomodulatory Activity of Lactococcus lactis A17 from Taiwan Fermented Cabbage in OVA-Sensitized BALB/c Mice.	Mei HC, Liu YW, Chiang YC, Chao SH, Mei NW, Liu YW, Tsai YC.	Evid Based Complement Alternat Med	10.1155/2013/287803	2013
Phylogeny	Sequencing the gene encoding manganese-dependent superoxide dismutase for rapid species identification of enterococci.	Poyart C, Quesnes G, Trieu-Cuot P.	J Clin Microbiol	10.1128/jcm.38.1.415-418.2000	2000
Genetics	Genomic comparative analysis of the environmental Enterococcus mundtii against enterococcal representative species.	Repizo GD, Espariz M, Blancato VS, Suarez CA, Esteban L, Magni C.	BMC Genomics	10.1186/1471-2164-15-489	2014
Enzymology	Use of a genus- and species-specific multiplex PCR for identification of enterococci.	Jackson CR, Fedorka-Cray PJ, Barrett JB.	J Clin Microbiol	10.1128/jcm.42.8.3558-3565.2004	2004
Pathogenicity	In-Depth In Silico Search for Cuttlefish (Sepia officinalis) Antimicrobial Peptides Following Bacterial Challenge of Haemocytes.	Benoist L, Houyvet B, Henry J, Corre E, Zanuttini B, Zatylny-Gaudin C.	Mar Drugs	10.3390/md18090439	2020
	First Description and Characterisation of Lactococcus garvieae Strains Causing Septicaemic Disease in Farmed Sea Bass (Dicentrarchus labrax; Linnaeus) in Spain.	Fouz B, Carballeda-Carrasco E, Barriga-Cuartero J, Torres-Corral Y, Robles A, Zarza C, Santos Y.	J Fish Dis	10.1111/jfd.70089	2025
Enzymology	Comparative genomics of Streptococcus parauberis: new target for molecular identification of serotype III.	Torres-Corral Y, Santos Y.	Appl Microbiol Biotechnol	10.1007/s00253-020-10683-z	2020
Phylogeny	Lactococcus garvieae subsp. bovis subsp. nov., lactic acid bacteria isolated from wild gaur (Bos gaurus) dung, and description of Lactococcus garvieae subsp. garvieae subsp. nov.	Varsha KK, Nampoothiri KM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001268	2016

References

#2816	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6783
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34688	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68380	Automatically annotated from API rID32A .
#68381	Automatically annotated from API rID32STR .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119537	Collection of Institut Pasteur ; Curators of the CIP; CIP 104369
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lactococcus garvieae subsp. garvieae (DSM 6783, ATCC 49156, CIP 104369)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 50CHac

API rID32A

API rID32STR

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000269925

16S sequences

GC content

Genome-based predictions

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