Staphylococcus devriesei (DSM 25293, CCUG 58238, LMG 25332)

Name: Staphylococcus devriesei (DSM 25293, CCUG 58238, LMG 25332)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14676

Type strain

Strain Designation KS-SP60, KS-SP 60

Culture col. no. DSM 25293 CCUG 58238 LMG 25332 CCM 7896 KS-SP60 2 more

NCBI tax ID(s) 586733

Special Collections DSMZ CCUG Literature strains CIP

History <- CCUG <- S. Piepers, Univ. Ghent, Belgium CIP <- 2010, S. De Vliegher, Ghent Univ., Merelbeke, Belgium: strain KS-SP 60

Links

Staphylococcus devriesei KS-SP60 is a facultative aerobe, Gram-positive, coccus-shaped bacterium that was isolated from teat apex of a Belgian dairy heifer.

Gram-positive coccus-shaped facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 364091

NCTC 13828,LMG 25332,CCUG 58238,CIP 110234,DSM 25293

@ref 20215

Last LPSN update 2026-02-09 11:21:28

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus devriesei

Full scientific name Staphylococcus devriesei Supré et al. 2010

BacDive ID	Other strains from **Staphylococcus devriesei** (1)	Type strain
155583	S. devriesei CCUG 58239, LMG 25293

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
29566	positive	coccus-shaped
118922	positive	coccus-shaped

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
17985	beta	1	1-2 days
61639			1-2 days

Pigmentation

29566

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17985	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
17985	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40476	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118922	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
17985	positive	growth	37
29566	positive	growth	25-42
29566	positive	optimum	28-35
40476	positive	growth	37
61639	positive	growth	37

Culture pH

@ref	Ability	Type	PH
29566	positive	optimum	7
29566	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29566	facultative aerobe
61639	aerobe
118922	facultative anaerobe
125439	obligate aerobe	94.1

Spore formation

29566

Spore formationno

Observation

29566

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68375	22599 ChEBI	arabinose	-	fermentation	from API ID32STA
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68375	29016 ChEBI	arginine	-	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68375	15824 ChEBI	D-fructose	+	fermentation	from API ID32STA
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68375	16899 ChEBI	D-mannitol	+	fermentation	from API ID32STA
68375	16024 ChEBI	D-mannose	+	fermentation	from API ID32STA
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68375	4853 ChEBI	esculin	-	hydrolysis	from API ID32STA
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
29566	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
29566	28260 ChEBI	galactose	+	carbon source
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
29566	17754 ChEBI	glycerol	+	carbon source
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
29566	17716 ChEBI	lactose	+	carbon source
68375	17716 ChEBI	lactose	+	fermentation	from API ID32STA
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
29566	17306 ChEBI	maltose	+	carbon source
68375	17306 ChEBI	maltose	+	fermentation	from API ID32STA
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
29566	29864 ChEBI	mannitol	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68375	59640 ChEBI	N-acetylglucosamine	-	fermentation	from API ID32STA
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
118922	17632 ChEBI	nitrate	+	reduction
118922	16301 ChEBI	nitrite	-	reduction
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
29566	33942 ChEBI	ribose	+	carbon source
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
29566	17992 ChEBI	sucrose	+	carbon source
68375	17992 ChEBI	sucrose	+	fermentation	from API ID32STA
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
29566	27082 ChEBI	trehalose	+	carbon source
68375	27082 ChEBI	trehalose	+	fermentation	from API ID32STA
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68375	32528 ChEBI	turanose	-	fermentation	from API ID32STA
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68375	16199 ChEBI	urea	+	hydrolysis	from API ID32STA
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	ChEBI	Metabolite	Is sensitive	Sensitivity conc.
68375	28368	novobiocin		1.8 µg	from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68375	15688 ChEBI	acetoin		from API ID32STA
118922	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68375	15688 ChEBI	acetoin	-	from API ID32STA

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68375	alkaline phosphatase	-	3.1.3.1	from API ID32STA
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68375	arginine dihydrolase	-	3.5.3.6	from API ID32STA
68382	beta-galactosidase	-	3.2.1.23	from API zym
68375	beta-galactosidase	-	3.2.1.23	from API ID32STA
68382	beta-glucosidase	+	3.2.1.21	from API zym
68375	beta-glucosidase	-	3.2.1.21	from API ID32STA
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68375	beta-glucuronidase	-	3.2.1.31	from API ID32STA
17985	catalase	+	1.11.1.6
29566	catalase	+	1.11.1.6
118922	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
17985	cytochrome-c oxidase	-	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68375	L-arginine arylamidase	-		from API ID32STA
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
118922	oxidase	-
68375	pyrrolidonyl arylamidase	-	3.4.19.3	from API ID32STA
68382	trypsin	+	3.4.21.4	from API zym
29566	urease	+	3.5.1.5
118922	urease	+	3.5.1.5
68375	urease	+	3.5.1.5	from API ID32STA
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118922	-	-	+	+	-	-	-	-	+	-	-	-	-	-	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
118922	not determinedn.d.	+/-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	+	+	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
17985	+	-	-	-	+	+	+	+	+	+	+	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Mammary gland

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
17985	teat apex of a Belgian dairy heifer		Belgium	BEL	Europe
61639	Teat apex,healthy dairy heifer	2006	Belgium	BEL	Europe
118922	Belgian dairy heifer, teat apex		Belgium	BEL	Europe	2006

Taxonmaps

69479

Global distribution of 16S sequence FJ389206 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	6
Soil Samples	23
Animal Samples	232
Plant Samples
Total Samples	261

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17985	1	Risk group (German classification) According to TRBA 466
118922	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM290262v1 assembly for Staphylococcus devriesei CCUG 58238	scaffold	GCA_002902625	586733.6	2917466835	586733	53.09

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
17985	Staphylococcus devriesei strain KS-SP 60 16S ribosomal RNA gene, partial sequence	FJ389206	1537	586733
124043	Staphylococcus devriesei strain CCUG 58238 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence.	MF678876	4426	586733
124043	Staphylococcus devriesei strain CCUG 58238 16S ribosomal RNA gene, partial sequence.	MF678932	1283	586733

GC content

@ref	GC-content (mol%)
17985	33.3
29566	33.3-33.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus devriesei CCUG 58238
NCBI: GCA_002902625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	67.20	no
125439	motility	BacteriaNetⓘ	no	57.10	no
125439	gram_stain	BacteriaNetⓘ	positive	69.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus devriesei CCUG 58238
NCBI: GCA_002902625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.57	no
125438	anaerobic	anaerobicⓘ	no	98.89	yes
125438	aerobic	aerobicⓘ	yes	64.47	no
125438	spore-forming	spore-formingⓘ	no	77.00	no
125438	thermophilic	thermophileⓘ	no	95.49	no
125438	flagellated	motile2+ⓘ	no	85.03	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Staphylococcus Rosenbach 1884.	Cole K, Foster D, Russell JE, Golubchik T, Llewelyn M, Wilson DJ, Crook D, Paul J, Modernising Medical Microbiology Consortium.	Microbiol Resour Announc	10.1128/mra.00062-19	2019
Phylogeny	A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
Phylogeny	Staphylococcus devriesei sp. nov., isolated from teat apices and milk of dairy cows.	Supre K, De Vliegher S, Cleenwerck I, Engelbeen K, Van Trappen S, Piepers S, Sampimon OC, Zadoks RN, De Vos P, Haesebrouck F	Int J Syst Evol Microbiol	10.1099/ijs.0.015982-0	2010

References

#17985	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25293
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25961	IJSEM 2739 2010 ( DOI 10.1099/ijs.0.015982-0 , PubMed 20061496 )
#29566	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25961
#40476	; Curators of the CIP;
#61639	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58238
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68375	Automatically annotated from API ID32STA .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118922	Collection of Institut Pasteur ; Curators of the CIP; CIP 110234
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Staphylococcus devriesei (DSM 25293, CCUG 58238, LMG 25332)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 50CHac

API ID32STA

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002902625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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