Staphylococcus rostri (DSM 21968, CCUG 57266, ARI 262)

Name: Staphylococcus rostri (DSM 21968, CCUG 57266, ARI 262)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14674

Type strain

Culture col. no. DSM 21968 CCUG 57266 ARI 262

NCBI tax ID(s) 522262

Special Collections DSMZ CCUG Literature strains

Links

Staphylococcus rostri DSM 21968 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from nasal cavity of a healthy pig.

Gram-positive coccus-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 370643

NCTC 13837,DSM 21968,CCUG 57266

@ref 20215

Last LPSN update 2025-12-16 09:50:25

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus rostri

Full scientific name Staphylococcus rostri Riesen and Perreten 2010

BacDive ID	Other strains from **Staphylococcus rostri** (1)	Type strain
14675	S. rostri DSM 21969, CCUG 57267, ARI 602

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Motility
29405	positive	0.5-1.1 µm	coccus-shaped

Pigmentation

29405

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16068	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16068	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16068	positive	growth	37	mesophilic
29405	positive	growth	37-43
29405	positive	optimum	37	mesophilic
61265	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29405	facultative anaerobe
61265	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29405	NaCl	positive	growth	09-12 %
29405	NaCl	positive	optimum	09-12 %

Observation

29405

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68375	22599 ChEBI	arabinose	-	fermentation	from API ID32STA
68375	29016 ChEBI	arginine	+	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68375	15824 ChEBI	D-fructose	+	fermentation	from API ID32STA
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68375	16899 ChEBI	D-mannitol	-	fermentation	from API ID32STA
68375	16024 ChEBI	D-mannose	-	fermentation	from API ID32STA
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68375	4853 ChEBI	esculin	+	hydrolysis	from API ID32STA
29405	28757 ChEBI	fructose	+	carbon source
29405	17234 ChEBI	glucose	+	carbon source
68375	17716 ChEBI	lactose	+	fermentation	from API ID32STA
68375	17306 ChEBI	maltose	-	fermentation	from API ID32STA
68375	59640 ChEBI	N-acetylglucosamine	+	fermentation	from API ID32STA
29405	17632 ChEBI	nitrate	+	reduction
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
29405	17992 ChEBI	sucrose	+	carbon source
68375	17992 ChEBI	sucrose	+	fermentation	from API ID32STA
68375	27082 ChEBI	trehalose	+	fermentation	from API ID32STA
68375	32528 ChEBI	turanose	-	fermentation	from API ID32STA
68375	16199 ChEBI	urea	-	hydrolysis	from API ID32STA

Antibiotic resistance

@ref	ChEBI	Metabolite	Is antibiotic	Is sensitive	Sensitivity conc.
68375	28368	novobiocin			1.8 µg	from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68375	15688 ChEBI	acetoin		from API ID32STA

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68375	15688 ChEBI	acetoin	+	from API ID32STA

Enzymes

@ref	Value	Activity	Ec
29405	alkaline phosphatase	+	3.1.3.1
68375	alkaline phosphatase	+	3.1.3.1	from API ID32STA
68375	arginine dihydrolase	+	3.5.3.6	from API ID32STA
68375	beta-galactosidase	-	3.2.1.23	from API ID32STA
68375	beta-glucosidase	+	3.2.1.21	from API ID32STA
68375	beta-glucuronidase	-	3.2.1.31	from API ID32STA
29405	catalase	+	1.11.1.6
68375	L-arginine arylamidase	-		from API ID32STA
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
68375	pyrrolidonyl arylamidase	+	3.4.19.3	from API ID32STA
68375	urease	-	3.5.1.5	from API ID32STA

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
16068	-	+	-	+	+	+	-	-	+	+	-	-	-	-	+	+	-	-	+	+	-	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body-Site	#Organ	#Nose

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16068	nasal cavity of a healthy pig	Berne	Switzerland	CHE	Europe
61265	Pig,nose,healthy animal (Edelschwein)	Bern	Switzerland	CHE	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16068	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM290214v1 assembly for Staphylococcus rostri DSM 21968	scaffold	GCA_002902145	522262.5	2917432201	522262	40.68

Genome browser: GCA_002902145

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
16068	Staphylococcus rostri partial 16S rRNA gene, type strain ARI 262T	FM242137	1413	522262
124043	Staphylococcus rostri strain DSM 21968 16S ribosomal RNA gene, partial sequence.	MF678958	1283	522262
124043	Staphylococcus rostri strain DSM 21968 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence.	MF678902	4529	522262

GC content

@ref	GC-content (mol%)	Method
16068	38.8	high performance liquid chromatography (HPLC)
29405	38.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus rostri DSM 21968
NCBI: GCA_002902145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	67.20	no
125439	motility	BacteriaNetⓘ	no	58.30	no
125439	gram_stain	BacteriaNetⓘ	positive	69.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	87.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus rostri DSM 21968
NCBI: GCA_002902145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.69	yes
125438	anaerobic	anaerobicⓘ	no	97.88	yes
125438	aerobic	aerobicⓘ	yes	59.48	no
125438	spore-forming	spore-formingⓘ	no	74.87	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	82.36	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comparative Genomics of Staphylococcus rostri, an Undescribed Bacterium Isolated from Dairy Mastitis.	Klove DC, Farre M, Strube ML, Astrup LB.	Vet Sci	10.3390/vetsci10090530	2023
	Exposure of Buffalo Milkers to Pathogenic Bacteria and Characterization of Isolated Methicillin-Resistant Staphylococcus spp.	Carraturo F, Alterisio MC, Guccione J, Cerullo V, Salamone M, Morelli M, Libralato G, Russo E, d'Angelo R, Ciaramella P, Di Loria A, Guida M.	Int J Environ Res Public Health	10.3390/ijerph19074353	2022
	Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Staphylococcus Rosenbach 1884.	Cole K, Foster D, Russell JE, Golubchik T, Llewelyn M, Wilson DJ, Crook D, Paul J, Modernising Medical Microbiology Consortium.	Microbiol Resour Announc	10.1128/mra.00062-19	2019
	An update on non-aureus staphylococci and mammaliicocci in cow milk: unveiling the presence of Staphylococcus borealis and Staphylococcus rostri by MALDI-TOF MS.	Penati M, Ulloa F, Locatelli C, Monistero V, Pavesi LF, Santandrea F, Piccinini R, Moroni P, Bronzo V, Addis MF.	Vet Res Commun	10.1007/s11259-024-10440-x	2024
	Endogenous Symmetric Dimethylarginine (SDMA) and Asymmetrical Dimethylarginine (ADMA) Levels in Healthy Cows and Cows with Subclinical and Clinical Mastitis-A Comparative Study.	Bronzo V, Sala G, Ciabattini I, Orsetti C, Armenia G, Meucci V, De Marchi L, Bertelloni F, Sgorbini M, Bonelli F.	Animals (Basel)	10.3390/ani15040527	2025
Enzymology	Non-aureus staphylococci in fecal samples of dairy cows: First report and phenotypic and genotypic characterization.	Wuytack A, De Visscher A, Piepers S, Boyen F, Haesebrouck F, De Vliegher S.	J Dairy Sci	10.3168/jds.2019-16662	2019
	Characterisation of Staphylococci Isolated from Milk Samples of a Water Buffalo Herd.	Labuschagne C, Karzis J, Britz H, Petzer IM.	Antibiotics (Basel)	10.3390/antibiotics11111609	2022
Pathogenicity	Effect on quarter milk somatic cell count and antimicrobial susceptibility of Staphylococcus rostri causing intramammary infection in dairy water buffaloes.	Locatelli C, Piepers S, De Vliegher S, Barberio A, Supre K, Scaccabarozzi L, Pisoni G, Bronzo V, Haesebrouck F, Moroni P.	J Dairy Sci	10.3168/jds.2012-6275	2013
Pathogenicity	Antibiotic resistance profile of Staphylococcus rostri, a new species isolated from healthy pigs.	Stegmann R, Perreten V.	Vet Microbiol	10.1016/j.vetmic.2010.03.015	2010
	Antibiotic Resistance Patterns in Cervical Microbes of Gilts and Sows.	Kellerman C, Malaluang P, Hansson I, Eliasson Selling L, Morrell JM.	Animals (Basel)	10.3390/ani12010117	2022
Pathogenicity	Characterization of FosL1, a Plasmid-Encoded Fosfomycin Resistance Protein Identified in Escherichia coli.	Kieffer N, Poirel L, Descombes MC, Nordmann P.	Antimicrob Agents Chemother	10.1128/aac.02042-19	2020
	Presence and Characterization of a Novel cfr-Carrying Tn558 Transposon Derivative in Staphylococcus delphini Isolated From Retail Food.	Zhang F, Wu S, Huang J, Yang R, Zhang J, Lei T, Dai J, Ding Y, Xue L, Wang J, Chen M, Wu Q.	Front Microbiol	10.3389/fmicb.2020.598990	2020
	Virulence Factors in Staphylococcus Associated with Small Ruminant Mastitis: Biofilm Production and Antimicrobial Resistance Genes.	Andrade NC, Laranjo M, Costa MM, Queiroga MC.	Antibiotics (Basel)	10.3390/antibiotics10060633	2021
	The Porcine Nasal Microbiota with Particular Attention to Livestock-Associated Methicillin-Resistant Staphylococcus aureus in Germany-A Culturomic Approach.	Schlattmann A, von Lutzau K, Kaspar U, Becker K.	Microorganisms	10.3390/microorganisms8040514	2020
Phylogeny	Streptococcus sciuri sp. nov., Staphylococcus marylandisciuri sp. nov. and Staphylococcus americanisciuri sp. nov., isolated from faeces of eastern grey squirrel (Sciurus carolinensis).	Volokhov DV, Zagorodnyaya TA, Furtak VA, Nattanmai G, Randall L, Jose S, Gao Y, Eisenberg T, Delmonte P, Blom J, Mitchell KK.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006015	2023
Phylogeny	Staphylococcus rostri sp. nov., a haemolytic bacterium isolated from the noses of healthy pigs.	Riesen A, Perreten V	Int J Syst Evol Microbiol	10.1099/ijs.0.012443-0	2009

References

#16068	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21968
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29405	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25812 (see below)
#61265	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57266
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68375	Automatically annotated from API ID32STA .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Staphylococcus rostri (DSM 21968, CCUG 57266, ARI 262)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API ID32STA

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002902145

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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