Klebsiella pneumoniae subsp. rhinoscleromatis (CCUG 31613, NCTC 5047)

Name: Klebsiella pneumoniae subsp. rhinoscleromatis (CCUG 31613, NCTC 5047)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 146619

Type strain

Culture col. no. CCUG 31613 NCTC 5047

NCBI tax ID(s) 39831

Special Collections CCUG

Links

Klebsiella pneumoniae subsp. rhinoscleromatis CCUG 31613 is a prokaryote that was isolated from Nose.

genome sequence

Name and taxonomic classification

SI-ID 3144

LMG 3179,NCTC 5047,CCUG 31613

@ref 20215

Last LPSN update 2025-12-16 10:05:08

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Klebsiella

Species Klebsiella pneumoniae subsp. rhinoscleromatis

Full scientific name Klebsiella pneumoniae subsp. rhinoscleromatis (Trevisan 1887) Ørskov 1984

Synonyms (1)

Klebsiella rhinoscleromatis

BacDive ID	Other strains from **Klebsiella pneumoniae subsp. rhinoscleromatis** (10)	Type strain
4967	K. pneumoniae subsp. rhinoscleromatis C 5046, R 70, CCUG 417, DSM 16231, ATCC 13884, ... (type strain)
135712	K. pneumoniae subsp. rhinoscleromatis 33-81, CIP 81.92
136494	K. pneumoniae subsp. rhinoscleromatis CIP 54.130
136543	K. pneumoniae subsp. rhinoscleromatis CIP 54.129
136545	K. pneumoniae subsp. rhinoscleromatis CIP 54.131
137602	K. pneumoniae subsp. rhinoscleromatis 42-79, Krachai, CIP 79.55
137612	K. pneumoniae subsp. rhinoscleromatis 15-80, CIP 80.51
139275	K. pneumoniae subsp. rhinoscleromatis CIP 54.45
146618	K. pneumoniae subsp. rhinoscleromatis CCUG 31612, ATCC 6908, NCTC 1936
146620	K. pneumoniae subsp. rhinoscleromatis CCUG 31614, NCTC 7799

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.978
125439	negative	97

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	92.6

Spore formation

@ref	Spore formation	Confidence
125438		91.629
125439		91.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68374	29016 ChEBI	arginine	-	hydrolysis	from API ID32E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68374	18333 ChEBI	D-arabitol	+	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	+	builds acid from	from API ID32E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68374	16899 ChEBI	D-mannitol	-	builds acid from	from API ID32E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68374	30849 ChEBI	L-arabinose	+	builds acid from	from API ID32E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68374	15792 ChEBI	malonate	+	assimilation	from API ID32E
68374	17306 ChEBI	maltose	-	builds acid from	from API ID32E
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374		Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	+	builds acid from	from API ID32E
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68374	17992 ChEBI	sucrose	+	builds acid from	from API ID32E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68374	27082 ChEBI	trehalose	+	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	-	energy source	from API ID32E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68374	35581 ChEBI	indole	from API ID32E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68374	35581 ChEBI	indole		-	from API ID32E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68374	alpha-galactosidase	+	3.2.1.22	from API ID32E
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68374	arginine dihydrolase	-	3.5.3.6	from API ID32E
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68374	beta-galactosidase	-	3.2.1.23	from API ID32E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68374	beta-glucosidase	+	3.2.1.21	from API ID32E
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
68374	lipase	-		from API ID32E
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68374	urease	-	3.5.1.5	from API ID32E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
50662	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+	-	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
50662	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	+	-	-	-	+	+	+	+	-	+	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Organ	#Nose

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
50662	Nose	Bali	Indonesia	IDN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	38732_F01 assembly for Klebsiella pneumoniae NCTC5047	contig	GCA_900451805	573.20142	573	12.99

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Klebsiella pneumoniae NCTC5047
NCBI: GCA_900451805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.90	no
125439	motility	BacteriaNetⓘ	yes	70.90	no
125439	gram_stain	BacteriaNetⓘ	negative	97.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Klebsiella pneumoniae strain NCTC5047
PATRIC: 573.20142

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.98	no
125438	anaerobic	anaerobicⓘ	no	99.03	no
125438	spore-forming	spore-formingⓘ	no	91.63	no
125438	thermophilic	thermophileⓘ	no	99.50	no
125438	aerobic	aerobicⓘ	no	59.10	no
125438	flagellated	motile2+ⓘ	no	75.88	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#50662	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31613
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68374	Automatically annotated from API ID32E .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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