Staphylococcus vitulinus DD756 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from ground lamb.
Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Staphylococcaceae |
| Genus Staphylococcus |
| Species Staphylococcus vitulinus |
| Full scientific name Staphylococcus vitulinus corrig. Webster et al. 1994 |
| Synonyms (3) |
| BacDive ID | Other strains from Staphylococcus vitulinus (3) | Type strain |
|---|---|---|
| 138135 | S. vitulinus V51, CIP 104987, ATCC 51161 | |
| 147644 | S. vitulinus CCUG 33939, PCM 2458, ATCC 51699 | |
| 150590 | S. vitulinus CCUG 41685 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 5933 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 42178 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 123881 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68375 | 22599 ChEBI | arabinose | - | fermentation | from API ID32STA |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68375 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32STA |
| 68375 | 17057 ChEBI | cellobiose | - | fermentation | from API ID32STA |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68375 | 15824 ChEBI | D-fructose | + | fermentation | from API ID32STA |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68375 | 17634 ChEBI | D-glucose | + | fermentation | from API ID32STA |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68375 | 16024 ChEBI | D-mannose | - | fermentation | from API ID32STA |
| 68375 | 16988 ChEBI | D-ribose | - | fermentation | from API ID32STA |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68375 | 4853 ChEBI | esculin | - | hydrolysis | from API ID32STA |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 123881 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68375 | 17716 ChEBI | lactose | - | fermentation | from API ID32STA |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68375 | 17306 ChEBI | maltose | - | fermentation | from API ID32STA |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68375 | 59640 ChEBI | N-acetylglucosamine | - | fermentation | from API ID32STA |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68375 | 17632 ChEBI | nitrate | + | reduction | from API ID32STA |
| 123881 | 17632 ChEBI | nitrate | + | reduction | |
| 123881 | 16301 ChEBI | nitrite | - | reduction | |
| 68375 | 18257 ChEBI | ornithine | - | degradation | from API ID32STA |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68375 | 16634 ChEBI | raffinose | - | fermentation | from API ID32STA |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68375 | 17992 ChEBI | sucrose | + | fermentation | from API ID32STA |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68375 | 27082 ChEBI | trehalose | - | fermentation | from API ID32STA |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68375 | 32528 ChEBI | turanose | - | fermentation | from API ID32STA |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68375 | 16199 ChEBI | urea | - | hydrolysis | from API ID32STA |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | ChEBI | Group ID | Metabolite | Is resistant | Resistance conc. | |
|---|---|---|---|---|---|---|
| 68375 | 28368 | 0 | novobiocin | 1.8 µg | from API ID32STA |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 123881 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68375 | alkaline phosphatase | - | 3.1.3.1 | from API ID32STA |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 123881 | amylase | - | ||
| 68375 | arginine dihydrolase | - | 3.5.3.6 | from API ID32STA |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 123881 | beta-galactosidase | - | 3.2.1.23 | |
| 68375 | beta-galactosidase | - | 3.2.1.23 | from API ID32STA |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68375 | beta-glucosidase | - | 3.2.1.21 | from API ID32STA |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68375 | beta-glucuronidase | - | 3.2.1.31 | from API ID32STA |
| 123881 | caseinase | + | 3.4.21.50 | |
| 123881 | catalase | + | 1.11.1.6 | |
| 123881 | coagulase | - | ||
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 123881 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 123881 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 123881 | gelatinase | +/- | ||
| 68375 | L-arginine arylamidase | - | from API ID32STA | |
| 123881 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 123881 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 123881 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 123881 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68375 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32STA |
| 123881 | oxidase | + | ||
| 123881 | protease | + | ||
| 68375 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API ID32STA |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 123881 | tween esterase | - | ||
| 123881 | urease | - | 3.5.1.5 | |
| 68375 | urease | - | 3.5.1.5 | from API ID32STA |
| 68382 | valine arylamidase | - | from API zym |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 51648 | |||||||||||||||||||||||||||||||||||||||||||||||||||
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| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123881 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | + | + | +/- | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Engineered | #Food production | #Meat | |
| #Host | #Mammals | #Caprinae (Sheep/Goat) |
Global distribution of 16S sequence AB009946 (>99% sequence identity) for Staphylococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM2902430v1 assembly for Mammaliicoccus vitulinus DSM 15615 | complete | 71237 | 97.98 | ||||
| 124043 | ASM1688924v1 assembly for Mammaliicoccus vitulinus FDAARGOS_1207 | complete | 71237 | 97.92 | ||||
| 66792 | ASM290226v1 assembly for Mammaliicoccus vitulinus DSM 15615 | scaffold | 71237 | 15.65 |
| 5933 | GC-content (mol%)34 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 69.22 | no |
| 125439 | motility | BacteriaNetⓘ | no | 66.62 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 58.37 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 80.28 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 83.90 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.40 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 65.36 | no |
| 125438 | aerobic | aerobicⓘ | yes | 69.74 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.08 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 78.38 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Draft genome sequences data of Mammaliicoccus lentus isolated from horse farm soil. | Alexyuk P, Alexyuk M, Moldakhanov Y, Berezin V, Bogoyavlenskiy A. | Data Brief | 10.1016/j.dib.2023.109752 | 2023 | |
| Phylogeny | Identification of the Staphylococcus sciuri species group with EcoRI fragments containing rRNA sequences and description of Staphylococcus vitulus sp. nov. | Webster JA, Bannerman TL, Hubner RJ, Ballard DN, Cole EM, Bruce JL, Fiedler F, Schubert K, Kloos WE | Int J Syst Bacteriol | 10.1099/00207713-44-3-454 | 1994 |
| #5933 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15615 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #42178 | ; Curators of the CIP; |
| #51648 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33636 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68375 | Automatically annotated from API ID32STA . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #123881 | Collection of Institut Pasteur ; Curators of the CIP; CIP 104850 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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