Staphylococcus nepalensis (DSM 15150, CCUG 48991, CCM 7045)

Name: Staphylococcus nepalensis (DSM 15150, CCUG 48991, CCM 7045)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14652

Type strain

Strain Designation CW1

Culture col. no. DSM 15150 CCUG 48991 CCM 7045 CIP 108211 CW1

NCBI tax ID(s) 214473

Special Collections DSMZ CCUG CIP

History <- J. Spergser; CW1 CIP <- 2003, CCM <- H.J. Busse <- J. Spergser: strain CW1

Links

Staphylococcus nepalensis CW1 is an aerobe, Gram-positive, coccus-shaped animal pathogen that was isolated from nasal mucosa of a goat.

Gram-positive coccus-shaped aerobe animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 128020

NCTC 13834,CCM 7045,DSM 15150,CIP 108211,CCUG 48991,LMG 26068

@ref 20215

Last LPSN update 2026-02-09 11:21:28

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus nepalensis

Full scientific name Staphylococcus nepalensis Spergser et al. 2003

BacDive ID	Other strains from **Staphylococcus nepalensis** (6)	Type strain
14653	S. nepalensis PM34, DSM 15151
14654	S. nepalensis B-P 8, W.O.215, DSM 20040, CCM 2433
153282	S. nepalensis CCUG 48992, CCM 7046
154338	S. nepalensis CCUG 53171
155187	S. nepalensis CCUG 56848
156883	S. nepalensis CCUG 66326

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
121270	positive	coccus-shaped
125439	positive			91.3

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5727	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
38263	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121270	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5727	positive	growth	37
38263	positive	growth	30
58425	positive	growth	30
121270	positive	growth	10-41
121270	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
58425	aerobe
121270	obligate aerobe
125439	obligate aerobe	91.6

Antibiotic susceptibility testing

	Test 1
@ref	5727
Medium	Mueller-Hinton Agar
Manual annotation	1
	Inhibition zone diameter in mm
Amikacin 30µg (disc)	36-38
Ampicillin 10µg (disc)	40
Aztreonam 30µg (disc)	0
Bacitracin 10Unit	12
Cefalotin 30µg (disc)	40
Cefazolin 30µg (disc)	34-36
Cefotaxime 30µg (disc)	30
Ceftriaxone 30µg (disc)	n.d.
Chloramphenicol 30µg (disc)	36
Clindamycin 10µg (disc)	n.d.
Colistin 10µg (disc)	12-14
Doxycycline 30µg (disc)	38-40
Erythromycin 15µg (disc)	22
Fosfomycin 50µg (disc)	n.d.
Gentamycin 10µg (disc)
Imipenem 10µg (disc)	48-50
Kanamycin 30µg (disc)	34-36
Lincomycin 15µg (disc)	20
Linezolid 10µg (disc)	n.d.
Mezlocillin 30µg (disc)	34
Moxifloxacin 5µg (disc)	n.d.
Neomycin 30µg (disc)	30
Nitrofurantoin 100µg (disc)	28
Norfloxacin 10µg (disc)	26-28
Nystatin 100Unit	n.d.
Ofloxacin 5µg (disc)	28
Oxacillin 5µg (disc)	28
Penicillin G 6µg (disc)	40
Pipemidic acid 20µg (disc)	10-12
Piperacillin/Tazobactam 40µg (disc)	n.d.
Polymyxin B 300Unit	18
Quinupristin/Dalfopristin 15µg (disc)	n.d.
Teicoplanin 30µg (disc)	n.d.
Tetracycline 30µg (disc)	36-38
Ticarcillin 75µg (disc)	42
Vancomycin 30µg (disc)	24

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68375	22599 ChEBI	arabinose	+	fermentation	from API ID32STA
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68381	29016 ChEBI	arginine	+	hydrolysis	from API rID32STR
68375	29016 ChEBI	arginine	-	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68375	15824 ChEBI	D-fructose	+	fermentation	from API ID32STA
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68375	16899 ChEBI	D-mannitol	+	fermentation	from API ID32STA
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68381	16899 ChEBI	D-mannitol	+	builds acid from	from API rID32STR
68375	16024 ChEBI	D-mannose	+	fermentation	from API ID32STA
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68375	4853 ChEBI	esculin	+	hydrolysis	from API ID32STA
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68381	606565 ChEBI	hippurate	+	hydrolysis	from API rID32STR
121270	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
68375	17716 ChEBI	lactose	+	fermentation	from API ID32STA
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68381	17306 ChEBI	maltose	-	builds acid from	from API rID32STR
68375	17306 ChEBI	maltose	+	fermentation	from API ID32STA
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68375	59640 ChEBI	N-acetylglucosamine	+	fermentation	from API ID32STA
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
121270	17632 ChEBI	nitrate	+	reduction
121270	16301 ChEBI	nitrite	-	reduction
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68375	17992 ChEBI	sucrose	+	fermentation	from API ID32STA
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68375	27082 ChEBI	trehalose	+	fermentation	from API ID32STA
68375	32528 ChEBI	turanose	-	fermentation	from API ID32STA
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68381	16199 ChEBI	urea	+	hydrolysis	from API rID32STR
68375	16199 ChEBI	urea	+	hydrolysis	from API ID32STA
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	ChEBI	Metabolite	Is resistant	Resistance conc.
5727	161680	Aztreonam		30 µg (disc)	from Antibiotic test
68375	28368	novobiocin		1.8 µg	from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite
68381	15688 ChEBI	acetoin	from API rID32STR
68375	15688 ChEBI	acetoin	from API ID32STA
121270	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
68381	15688 ChEBI	acetoin	-		from API rID32STR
68375	15688 ChEBI	acetoin	-		from API ID32STA
121270	15688 ChEBI	acetoin	-
121270	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68381	Alanyl-Phenylalanyl-Proline arylamidase	-		from API rID32STR
121270	alcohol dehydrogenase	-	1.1.1.1
68381	alkaline phosphatase	+	3.1.3.1	from API rID32STR
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68375	alkaline phosphatase	+	3.1.3.1	from API ID32STA
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121270	amylase	-
68381	arginine dihydrolase	+	3.5.3.6	from API rID32STR
68375	arginine dihydrolase	-	3.5.3.6	from API ID32STA
68381	beta-galactosidase	+	3.2.1.23	from API rID32STR
68382	beta-galactosidase	+	3.2.1.23	from API zym
121270	beta-galactosidase	+	3.2.1.23
68375	beta-galactosidase	+	3.2.1.23	from API ID32STA
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68382	beta-glucosidase	-	3.2.1.21	from API zym
68375	beta-glucosidase	+	3.2.1.21	from API ID32STA
68381	beta-glucuronidase	+	3.2.1.31	from API rID32STR
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68375	beta-glucuronidase	+	3.2.1.31	from API ID32STA
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
121270	caseinase	-	3.4.21.50
121270	catalase	+	1.11.1.6
121270	coagulase	-
68382	cystine arylamidase	-	3.4.11.3	from API zym
121270	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121270	gamma-glutamyltransferase	-	2.3.2.2
121270	gelatinase	+/-
68381	glycyl tryptophan arylamidase	-		from API rID32STR
68375	L-arginine arylamidase	-		from API ID32STA
121270	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
121270	lipase	-
68382	lipase (C 14)	-		from API zym
121270	lysine decarboxylase	-	4.1.1.18
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121270	ornithine decarboxylase	-	4.1.1.17
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
121270	oxidase	-
121270	phenylalanine ammonia-lyase	-	4.3.1.24
68381	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32STR
68375	pyrrolidonyl arylamidase	+	3.4.19.3	from API ID32STA
68382	trypsin	-	3.4.21.4	from API zym
121270	tween esterase	+
68381	urease	+	3.5.1.5	from API rID32STR
121270	urease	+	3.5.1.5
68375	urease	+	3.5.1.5	from API ID32STA
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121270	-	+	+	+	-	-	-	-	-	-	+	+	-	+	+	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121270	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	+/-	+/-	-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
5727	+	-	-	+	+	+	+	+	+	+	+	-	-	-	+	-	+	-	+	+	+	+	+	-	+	+
5727	+	-	-	+	+	+	+	+	+	+	+	-	-	-	+	-	+	-	+	+	+	+	+	-	+	+

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
5727	+	+	-	+	-	+	-	+	-	+	+	-	+	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121270	not determinedn.d.	+	+	-	+	+	-	-	+	-	+	+	+	-	-	-	-	-	-	+	+	+	+	+	+	-	-	+	-	+	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Organ	#Nose

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
5727	nasal mucosa of a goat	Chitwan area	Nepal	NPL	Asia
58425	Goat nasal mucosa	Chitwan	Nepal	NPL	Asia
121270	Nasal mucosa of a goat	Chitwan	Nepal	NPL	Asia	1999

Taxonmaps

69479

Global distribution of 16S sequence AJ517414 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	20
Soil Samples	26
Animal Samples	679
Plant Samples	34
Total Samples	759

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
5727		2	Risk group (German classification) According to TRBA 466
121270		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1463504v1 assembly for Staphylococcus nepalensis CCM 7045	scaffold	GCA_014635045	214473.24	8112495019	214473	71.76
66792	ASM290274v1 assembly for Staphylococcus nepalensis DSM 15150	scaffold	GCA_002902745	214473.15	2917442331	214473

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Staphylococcus nepalensis strain DSM 15150 16S ribosomal RNA gene, partial sequence	AY688080	464	214473
5727	Staphylococcus nepalensis 16S rRNA gene, strain CW1T	AJ517414	1470	214473
124043	Staphylococcus nepalensis strain DSM 15150 16S ribosomal RNA gene, partial sequence.	MF678950	1283	214473
124043	Staphylococcus nepalensis strain DSM 15150 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence.	MF678894	4323	214473
124043	Staphylococcus nepalensis strain CCM 7045 16S ribosomal RNA gene, partial sequence.	DQ394096	527	214473

GC content

5727

GC-content (mol%)33

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus nepalensis CCM 7045
NCBI: GCA_014635045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	88.60	no
125439	motility	BacteriaNetⓘ	no	78.60	no
125439	gram_stain	BacteriaNetⓘ	positive	91.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus nepalensis CCM 7045
NCBI: GCA_014635045.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.73	no
125438	anaerobic	anaerobicⓘ	no	99.41	yes
125438	aerobic	aerobicⓘ	yes	74.00	yes
125438	spore-forming	spore-formingⓘ	no	72.63	no
125438	thermophilic	thermophileⓘ	no	95.00	no
125438	flagellated	motile2+ⓘ	no	82.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic Characterization of Marine Staphylococcus shinii Strain SC-M1C: Potential Genetic Adaptations and Ecological Role	El Samak M, Lotfy H, Sedeek A, Mohamed Y, Solyman S.	Microorganisms		2025
	Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Staphylococcus Rosenbach 1884.	Cole K, Foster D, Russell JE, Golubchik T, Llewelyn M, Wilson DJ, Crook D, Paul J, Modernising Medical Microbiology Consortium.	Microbiol Resour Announc	10.1128/mra.00062-19	2019
Phylogeny	A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
Phylogeny	Staphylococcus nepalensis sp. nov., isolated from goats of the Himalayan region.	Spergser J, Wieser M, Taubel M, Rossello-Mora RA, Rosengarten R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.02646-0	2003

References

#5727	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15150
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38263	; Curators of the CIP;
#58425	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48991
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68375	Automatically annotated from API ID32STA .
#68381	Automatically annotated from API rID32STR .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121270	Collection of Institut Pasteur ; Curators of the CIP; CIP 108211
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Staphylococcus nepalensis (DSM 15150, CCUG 48991, CCM 7045)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Antibiotic susceptibility testing

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 50CHac

API ID32STA

API rID32STR

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014635045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media