Name: Mammaliicoccus sciuri DSM 20345
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14631

Type strain:

Species: Mammaliicoccus sciuri

Culture col. no.: DSM 20345, ATCC 29062, BCRC 12927, CCM 3473, CCUG 15598, CNCTC 5683, JCM 2425, NCTC 12103, SC 116, CIP 81.62, MTCC 6154, NRRL B-14777

Strain history: CIP <- 1981, J. Pillet, Inst. Pasteur, Paris, France <- ATCC <- W.E. Kloos: strain SC116, Sciurus carolinensis

NCBI tax ID(s): 1296 (species)

SI-ID 105433

ATCC 29062, CCUG 15598, CCM 3473, DSM 20345, NCTC 12103, JCM 2425, CIP 81.62, NRRL B-14777, BCRC 12927, CCRC 12927, CNCTC 5683

Other strains from Mammaliicoccus sciuri

M. sciuri LRA 0180 677, LRA 0180677, DSM ...
M. sciuri DD 791, BM 12488, DD791, CCM 4835, ...
M. sciuri R1-33, BM 12492, DSM 16827, ATCC ...

Section

Mammaliicoccus sciuri DSM 20345 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from skin of eastern gray squirrel .

Gram-positive
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Mammaliicoccus*
	Species	**Mammaliicoccus sciuri**
	Full Scientific Name (LPSN)	Mammaliicoccus sciuri (Kloos et al. 1976) Madhaiyan et al. 2020

	Synonym	Staphylococcus sciuri
	Synonym	Staphylococcus sciuri subsp. rodentium
	Synonym	Staphylococcus sciuri subsp. carnaticus

Information on morphological and physiological properties Morphology

[Ref.: #122519]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #122519]	Cell shape	coccus-shaped

[Ref.: #122519]	Motility	no

[Ref.: #8750]	Type of hemolysis	gamma
[Ref.: #8750]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8750]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8750]

Culture medium growth

[Ref.: #8750]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8750]

Culture medium composition

expand / minimize

[Ref.: #8750]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8750]

Culture medium growth

[Ref.: #8750]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8750]

Culture medium composition

expand / minimize

[Ref.: #42159]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #42159]

Culture medium growth

[Ref.: #42159]

Culture medium composition

expand / minimize

[Ref.: #122519]

Culture medium

CIP Medium 72

[Ref.: #122519]

Culture medium growth

[Ref.: #122519]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8750]	growth	37 °C
[Ref.: #42159]	growth	37 °C
[Ref.: #46285]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #122519]	growth	10-45 °C

[Ref.: #8750]	Temperature range	mesophilic
[Ref.: #42159]	Temperature range	mesophilic
[Ref.: #46285]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #46285]	Oxygen tolerance	aerobe
[Ref.: #122519]	Oxygen tolerance	facultative anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.683

[Ref.: #8750]	Murein short key	A11.08
[Ref.: #8750]	Murein types	A3alpha L-Lys-L-Ala-Gly₄_-₅

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	arabinose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	arginine ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	cellobiose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-mannitol ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-mannose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-ribose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	esculin ChEBI	+	hydrolysis	* from API ID32STA
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122519]	hippurate ChEBI	+	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	lactose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	maltose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	N-acetylglucosamine ChEBI	+	fermentation	* from API ID32STA
[Ref.: #122519]	nitrate ChEBI	+	reduction
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #122519]	nitrite ChEBI	-	reduction
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	sucrose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	trehalose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	turanose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic resistance	Concentration
[Ref.: #68375]		novobiocin ChEBI	yes	1.8	µg	* from API ID32STA

	Metabolite production	Metabolite	Production
[Ref.: #122519]		indole ChEBI	no
[Ref.: #68375]		acetoin ChEBI	no	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #122519]		acetoin ChEBI	-
[Ref.: #68375]		acetoin ChEBI	-	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122519]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122519]	amylase	-
[Ref.: #68375]	arginine dihydrolase	-	3.5.3.6	* from API ID32STA
[Ref.: #122519]	beta-galactosidase	-	3.2.1.23
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA, API zym
[Ref.: #68375]	beta-glucosidase	+	3.2.1.21	* from API ID32STA, API zym
[Ref.: #68375]	beta-glucuronidase	+	3.2.1.31	* from API ID32STA, API zym
[Ref.: #122519]	caseinase	+	3.4.21.50
[Ref.: #8750]	catalase	+	1.11.1.6
[Ref.: #122519]	catalase	+	1.11.1.6
[Ref.: #122519]	coagulase	-
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #8750]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #122519]	DNase	+/-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122519]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122519]	gelatinase	+
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #122519]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122519]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122519]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122519]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #122519]	oxidase	+
[Ref.: #122519]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #122519]	protease	+
[Ref.: #68375]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API ID32STA
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122519]	tween esterase	-
[Ref.: #122519]	urease	-	3.5.1.5
[Ref.: #68375]	urease	-	3.5.1.5	* from API ID32STA
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122519]	12272	not determinedn.d.	+	-	-	+	+	-	-	-	-	+/-	+	+	+	-	-	-	-	+	+/-	-	-	+/-	+	+	+	+	+/-	+	-	-	+	+	-	+	-	-	-	-	+	+/-	-	-	+/-	-	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122519]	3439	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	+	-	-	-	+	+	+	+	+	+	-	+	-	-	+	+	-	+	-	-	+	+	+	+	+	+	-	-	-	-	+	-	-	-	+	-	-	-	+	-	-	-	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	-	+	+	+	+	+	-	-	-	+

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #8750]	6034	-	-	-	+	+	+	+	+	+	+	+	-	+	+	+	-	-	-	+	-	+	+	+	+	+	+
[Ref.: #8750]	6033	-	-	-	+	+	+	+	+	+	+	+	-	+	+	+	-	-	-	-	-	+	+	+	+	+	+
[Ref.: #8750]	6032	-	-	-	+	+	+	+	+	+	+	+	-	+	+	+	-	-	-	+	-	+	+	+	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122519]	13491	-	+	+	+	-	+	-	-	-	-	+	+	-	-	+	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8750]	Sample type/isolated from	skin of eastern gray squirrel (Sciurus carolinensis)
[Ref.: #8750]	Host species	Sciurus carolinensis

[Ref.: #46285]	Sample type/isolated from	Eastern gray squirrel skin
[Ref.: #46285]	Sampling date	1988-06-15

[Ref.: #67770]	Sample type/isolated from	Eastern grey squirrel skin

[Ref.: #122519]	Sample type/isolated from	Eastern gray squirrel skin
[Ref.: #122519]	Geographic location (country and/or sea, region)	Sunbury, Pennsylvania
[Ref.: #122519]	Country	United States of America
[Ref.: #122519]	Country ISO 3 Code	USA
[Ref.: #122519]	Continent	North America
[Ref.: #122519]	Isolation date	1972
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ421446 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	251
Soil Samples	269
Animal Samples	6869
Plant Samples	116
Total Samples	7505

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8750]	Pathogenicity (human)	yes, in single cases
[Ref.: #8750]	Pathogenicity (animal)	yes
[Ref.: #8750]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122519]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8750]	Staphylococcus sciuri subsp. sciuri 16S rRNA gene, strain DSM 20345T	AJ421446	1528	ENA	147467 tax ID
[Ref.: #20218]	Staphylococcus sciuri subsp. sciuri strain DSM 20345 16S ribosomal RNA gene, partial sequence	AY688097	465	ENA	147467 tax ID	*
[Ref.: #20218]	Staphylococcus sciuri 16S ribosomal RNA gene, partial sequence	AF041358	906	ENA	1296 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mammaliicoccus sciuri DSM 20345	GCA_001046995	contig	GenBank	1296 tax ID
[Ref.: #67770]	Mammaliicoccus sciuri NCTC 12103	GCA_002901825	scaffold	GenBank	1296 tax ID
[Ref.: #66792]	Mammaliicoccus sciuri NCTC12103	GCA_900474615	complete	GenBank	1296 tax ID	*
[Ref.: #66792]	Staphylococcus sciuri subsp. sciuri strain DSM 20345	147467.8	wgs	PATRIC	1296 tax ID	*
[Ref.: #66792]	Staphylococcus sciuri subsp. sciuri strain NCTC 12103	147467.21	wgs	PATRIC	1296 tax ID	*
[Ref.: #66792]	Staphylococcus sciuri subsp. sciuri strain NCTC12103	147467.22	complete	PATRIC	1296 tax ID	*

[Ref.: #8750]	GC-content	36.5 mol%
[Ref.: #67770]	GC-content	32.7 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	36.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Staphylococcus sciuri subsp. sciuri strain NCTC12103 PATRIC: 147467.22
[Ref.: #69481]	spore-forming	no	85	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mammaliicoccus sciuri NCTC12103 NCBI: GCA_900474615.1
[Ref.: #69480]	flagellated	no	92.944	no
[Ref.: #69480]	gram-positive	yes	92.402	no
[Ref.: #69480]	anaerobic	no	99.692	yes
[Ref.: #69480]	aerobic	yes	94.117	yes
[Ref.: #69480]	halophile	yes	94.899	no
[Ref.: #69480]	spore-forming	no	87.476	no
[Ref.: #69480]	thermophile	no	99.889	yes
[Ref.: #69480]	glucose-util	yes	88.506	no
[Ref.: #69480]	motile	no	86.634	no
[Ref.: #69480]	glucose-ferment	yes	74.795	yes

Availability in culture collections External links

[Ref.: #8750]

Culture collection no.

DSM 20345, ATCC 29062, BCRC 12927, CCM 3473, CCUG 15598, CNCTC 5683, JCM 2425, NCTC 12103, SC 116, CIP 81.62, MTCC 6154, NRRL B-14777

[Ref.: #83759]

SI-ID 105433

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Genetic organization of the mecA region in methicillin-susceptible and methicillin-resistant strains of Staphylococcus sciuri.	Wu S, de Lencastre H, Tomasz A	J Bacteriol	10.1128/JB.180.2.236-242.1998	1998	*
Phylogeny	High intraspecies heterogeneity within Staphylococcus sciuri and rejection of its classification into S. sciuri subsp. sciuri, S. sciuri subsp. carnaticus and S. sciuri subsp. rodentium.	Svec P, Petras P, Pantucek R, Doskar J, Sedlacek I	Int J Syst Evol Microbiol	10.1099/ijsem.0.001493	2016	*

References

#8750

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20345

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42159 ; Curators of the CIP;
#46285 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15598

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68375

Automatically annotated from API ID32STA .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83759

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID105433.1 )

#122519 Collection of Institut Pasteur ; Curators of the CIP; CIP 81.62
* These data were automatically processed and therefore are not curated

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Staphylococcus sciuri subsp. sciuri strain NCTC12103

Mammaliicoccus sciuri NCTC12103

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