Legionella pneumophila CCUG 30708 is a bacterium of the family Legionellaceae.
genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Legionellales |
| Family Legionellaceae |
| Genus Legionella |
| Species Legionella pneumophila |
| Full scientific name Legionella pneumophila Brenner et al. 1979 (Approved Lists 1980) |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 93.122 |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||
| @ref | 50234 | |||||||||||||||||||||||||||||||||||||||
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| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 45532_C01 assembly for Legionella pneumophila NCTC12181 | contig | 446 | 77.11 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 93.12 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 47.52 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.82 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.75 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 98.49 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.14 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 91.45 | no |
| 125438 | aerobic | aerobicⓘ | no | 77.74 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.95 | no |
| 125438 | flagellated | motile2+ⓘ | no | 61.56 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Development of a DNA microarray method for detection and identification of all 15 distinct O-antigen forms of Legionella pneumophila. | Cao B, Yao F, Liu X, Feng L, Wang L. | Appl Environ Microbiol | 10.1128/aem.01957-13 | 2013 | |
| Intergenic 16S rRNA gene (rDNA)-23S rDNA sequence length polymorphisms in members of the family Legionellaceae. | Hookey JV, Birtles RJ, Saunders NA. | J Clin Microbiol | 10.1128/jcm.33.9.2377-2381.1995 | 1995 | ||
| Metabolism | Development of the BIOLOG substrate utilization system for identification of Legionella spp. | Mauchline WS, Keevil CW. | Appl Environ Microbiol | 10.1128/aem.57.11.3345-3349.1991 | 1991 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #50234 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30708 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive146253.20260601.11
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