Streptococcus agalactiae CCUG 30636 is a bacterium that was isolated from Human cervix.
genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Streptococcaceae |
| Genus Streptococcus |
| Species Streptococcus agalactiae |
| Full scientific name Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 97.8 |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 93 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68370 | 29016 ChEBI | arginine | + | hydrolysis | from API 20STR |
| 68381 | 29016 ChEBI | arginine | + | hydrolysis | from API rID32STR |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 68381 | 16899 ChEBI | D-mannitol | - | builds acid from | from API rID32STR |
| 68370 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 20STR |
| 68381 | 16988 ChEBI | D-ribose | - | builds acid from | from API rID32STR |
| 68370 | 16988 ChEBI | D-ribose | + | builds acid from | from API 20STR |
| 68370 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 20STR |
| 68381 | 16443 ChEBI | D-tagatose | - | builds acid from | from API rID32STR |
| 68370 | 4853 ChEBI | esculin | - | hydrolysis | from API 20STR |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68370 | 28087 ChEBI | glycogen | - | builds acid from | from API 20STR |
| 68370 | 606565 ChEBI | hippurate | + | hydrolysis | from API 20STR |
| 68381 | 606565 ChEBI | hippurate | + | hydrolysis | from API rID32STR |
| 68370 | 15443 ChEBI | inulin | - | builds acid from | from API 20STR |
| 68370 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 20STR |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68370 | 17716 ChEBI | lactose | - | builds acid from | from API 20STR |
| 68381 | 17716 ChEBI | lactose | - | builds acid from | from API rID32STR |
| 68381 | 17306 ChEBI | maltose | + | builds acid from | from API rID32STR |
| 68381 | 6731 ChEBI | melezitose | - | builds acid from | from API rID32STR |
| 68381 | 28053 ChEBI | melibiose | - | builds acid from | from API rID32STR |
| 68381 | 320055 ChEBI | methyl beta-D-glucopyranoside | + | builds acid from | from API rID32STR |
| 68381 | 27941 ChEBI | pullulan | - | builds acid from | from API rID32STR |
| 68370 | 16634 ChEBI | raffinose | - | builds acid from | from API 20STR |
| 68381 | 16634 ChEBI | raffinose | - | builds acid from | from API rID32STR |
| 68381 | 30911 ChEBI | sorbitol | - | builds acid from | from API rID32STR |
| 68370 | 28017 ChEBI | starch | - | builds acid from | from API 20STR |
| 68381 | 17992 ChEBI | sucrose | + | builds acid from | from API rID32STR |
| 68381 | 27082 ChEBI | trehalose | + | builds acid from | from API rID32STR |
| 68370 | 27082 ChEBI | trehalose | + | builds acid from | from API 20STR |
| 68381 | 16199 ChEBI | urea | - | hydrolysis | from API rID32STR |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | from API rID32STR | |
| 68381 | alkaline phosphatase | + | 3.1.3.1 | from API rID32STR |
| 68370 | alkaline phosphatase | + | 3.1.3.1 | from API 20STR |
| 68381 | alpha-galactosidase | - | 3.2.1.22 | from API rID32STR |
| 68370 | alpha-galactosidase | - | 3.2.1.22 | from API 20STR |
| 68381 | arginine dihydrolase | + | 3.5.3.6 | from API rID32STR |
| 68370 | arginine dihydrolase | + | 3.5.3.6 | from API 20STR |
| 68381 | beta-galactosidase | - | 3.2.1.23 | from API rID32STR |
| 68370 | beta-galactosidase | - | 3.2.1.23 | from API 20STR |
| 68381 | beta-glucosidase | - | 3.2.1.21 | from API rID32STR |
| 68370 | beta-glucosidase | - | 3.2.1.21 | from API 20STR |
| 68381 | beta-glucuronidase | + | 3.2.1.31 | from API rID32STR |
| 68370 | beta-glucuronidase | + | 3.2.1.31 | from API 20STR |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 68381 | glycyl tryptophan arylamidase | - | from API rID32STR | |
| 68370 | leucine arylamidase | + | 3.4.11.1 | from API 20STR |
| 68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32STR |
| 68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32STR |
| 68370 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API 20STR |
| 68381 | urease | - | 3.5.1.5 | from API rID32STR |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 50189 | |||||||||||||||||||||||||||||||||||||||||||||||||||
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| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50189 | + | - | - | + | - | + | - | - | - | - | + | - | + | - | - | - | + | + | - | - | - | - | + | - | - | + | - | - | + | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | #Female | |
| #Host Body-Site | #Urogenital tract | - | |
| #Infection | #Patient | - |
| @ref | Sample type | Sampling date | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|---|
| 50189 | Human cervix | 1992-10-02 | Göteborg | Sweden | SWE | Europe |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM31154v1 assembly for Streptococcus agalactiae CCUG 30636 | contig | 1105257 | 75.27 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.80 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 87.60 | no |
| 125439 | motility | BacteriaNetⓘ | no | 72.30 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 93.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 86.25 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 91.26 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 85.53 | no |
| 125438 | aerobic | aerobicⓘ | no | 95.77 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.91 | no |
| 125438 | flagellated | motile2+ⓘ | no | 88.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Exophiala species in household environments and their antifungal resistance profile. | Kondori N, Jaen-Luchoro D, Karlsson R, Abedzaedeh B, Hammarstrom H, Jonsson B. | Sci Rep | 10.1038/s41598-024-68166-4 | 2024 | ||
| Garvicins AG1 and AG2: Two Novel Class IId Bacteriocins of Lactococcus garvieae Lg-Granada. | Maldonado-Barragan A, Alegria-Carrasco E, Blanco MDM, Vela AI, Fernandez-Garayzabal JF, Rodriguez JM, Gibello A. | Int J Mol Sci | 10.3390/ijms23094685 | 2022 | ||
| Orthodontic bonding procedures significantly influence biofilm composition. | Jeon DM, An JS, Lim BS, Ahn SJ. | Prog Orthod | 10.1186/s40510-020-00314-8 | 2020 | ||
| Phylogeny | Prevalence and diversity of Borrelia species in ticks that have bitten humans in Sweden. | Wilhelmsson P, Fryland L, Borjesson S, Nordgren J, Bergstrom S, Ernerudh J, Forsberg P, Lindgren PE. | J Clin Microbiol | 10.1128/jcm.01061-10 | 2010 | |
| Genotypic and phenotypic applications for the differentiation and species-level identification of achromobacter for clinical diagnoses. | Gomila M, Prince-Manzano C, Svensson-Stadler L, Busquets A, Erhard M, Martinez DL, Lalucat J, Moore ER. | PLoS One | 10.1371/journal.pone.0114356 | 2014 | ||
| Metabolism | Staphylococcal proteases aid in evasion of the human complement system. | Jusko M, Potempa J, Kantyka T, Bielecka E, Miller HK, Kalinska M, Dubin G, Garred P, Shaw LN, Blom AM. | J Innate Immun | 10.1159/000351458 | 2014 | |
| Phylogeny | Array-based identification of species of the genera Abiotrophia, Enterococcus, Granulicatella, and Streptococcus. | Tung SK, Teng LJ, Vaneechoutte M, Chen HM, Chang TC. | J Clin Microbiol | 10.1128/jcm.01712-06 | 2006 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #50189 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30636 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68370 | Automatically annotated from API 20STR . |
| #68381 | Automatically annotated from API rID32STR . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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