Capnocytophaga cynodegmi (CCUG 30624, MCCM 00262, LMG 11538)

Name: Capnocytophaga cynodegmi (CCUG 30624, MCCM 00262, LMG 11538)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 146217

Type strain

Culture col. no. CCUG 30624 MCCM 00262 LMG 11538

NCBI tax ID(s) 28189

Special Collections CCUG

Links

Capnocytophaga cynodegmi CCUG 30624 is a bacterium that was isolated from Human hand,wound.

Bacteria

Name and taxonomic classification

SI-ID 10481

LMG 11538,CCUG 30624

@ref 20215

Last LPSN update 2026-05-29 08:41:07

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Capnocytophaga

Species Capnocytophaga cynodegmi

Full scientific name Capnocytophaga cynodegmi Brenner et al. 1990

BacDive ID	Other strains from **Capnocytophaga cynodegmi** (5)	Type strain
5494	C. cynodegmi 79120329, E6447, MCCM 00247, LMG 11513, MCCM ... (type strain)
143538	C. cynodegmi CCUG 19954
146218	C. cynodegmi CCUG 30625, MCCM 00263, LMG 11539
149924	C. cynodegmi CCUG 38690
154589	C. cynodegmi CCUG 54501

Morphology

Culture and growth conditions

Physiology and metabolism

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	vitamin K metabolism	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	palmitate biosynthesis	100	22 of 22
66794	sulfopterin metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	starch degradation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	glycogen metabolism	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	NAD metabolism	72.22	13 of 18
66794	heme metabolism	71.43	10 of 14
66794	purine metabolism	69.15	65 of 94
66794	serine metabolism	66.67	6 of 9
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	pyrimidine metabolism	66.67	30 of 45
66794	vitamin B6 metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	Entner Doudoroff pathway	60	6 of 10
66794	propionate fermentation	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	threonine metabolism	60	6 of 10
66794	glycolysis	58.82	10 of 17
66794	citric acid cycle	57.14	8 of 14
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of hexoses	55.56	10 of 18
66794	lipid metabolism	54.84	17 of 31
66794	glutamate and glutamine metabolism	53.57	15 of 28
66794	non-pathway related	52.63	20 of 38
66794	alanine metabolism	51.72	15 of 29
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	cysteine metabolism	50	9 of 18
66794	ethanol fermentation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	isoleucine metabolism	50	4 of 8
66794	kanosamine biosynthesis II	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	oxidative phosphorylation	48.35	44 of 91
66794	phenylalanine metabolism	46.15	6 of 13
66794	pentose phosphate pathway	45.45	5 of 11
66794	degradation of sugar acids	44	11 of 25
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	lysine metabolism	40.48	17 of 42
66794	lipoate biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	sulfate reduction	38.46	5 of 13
66794	leucine metabolism	38.46	5 of 13
66794	vitamin B1 metabolism	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	tryptophan metabolism	36.84	14 of 38
66794	metabolism of disaccharids	36.36	4 of 11
66794	proline metabolism	36.36	4 of 11
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	formaldehyde oxidation	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	degradation of sugar alcohols	31.25	5 of 16
66794	methionine metabolism	30.77	8 of 26
66794	polyamine pathway	30.43	7 of 23
66794	coenzyme M biosynthesis	30	3 of 10
66794	glycine metabolism	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	propanol degradation	28.57	2 of 7
66794	mevalonate metabolism	28.57	2 of 7
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	histidine metabolism	27.59	8 of 29
66794	d-xylose degradation	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	arginine metabolism	25	6 of 24
66794	toluene degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	urea cycle	23.08	3 of 13
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22
66794	valine metabolism	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18
66794	glutathione metabolism	21.43	3 of 14

Fatty acid profile

Metadata FA analysis

@ref

50186

Fatty acid	Percentage	ECL
C15:0 ISO	60.5	14.621
C17:0 iso 3OH	9.7	18.161
C16:0 3OH	4.8	17.52
C18:1 ω9c	4.1	17.769
C16:0	3.8	16
C18:2 ω6,9c/C18:0 ANTE	3.6	17.724
C14:0	3.2	14
C15:0 ISO 3OH	3.1	16.135
C15:0 ANTEISO	1.8	14.711
Unidentified	1.8
C18:0	1.3	18
unknown 16.580	0.9	16.58
C17:0 iso	0.8	16.629
C13:0 iso	0.6	12.612

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Limb	#Hand
#Infection	#Patient	-

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
50186	Human hand,wound	Homo sapiens	USA	USA	North America

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#50186	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30624
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us