Campylobacter helveticus (CCUG 30563)

Name: Campylobacter helveticus (CCUG 30563)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 146191

Type strain

Culture col. no. CCUG 30563

NCBI tax ID(s) 28898

Special Collections CCUG

Links

Campylobacter helveticus CCUG 30563 is a prokaryote that was isolated from Cat feces,acute colitis.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 52281

CCUG 30563

@ref 20215

Last LPSN update 2025-12-16 10:05:02

Domain Pseudomonadati

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter helveticus

Full scientific name Campylobacter helveticus Stanley et al. 1993

BacDive ID	Other strains from **Campylobacter helveticus** (12)	Type strain
137358	C. helveticus CIP 104877, NCTC 12470, ATCC 51209, CCUG ... (type strain)
146192	C. helveticus CCUG 30564
146193	C. helveticus CCUG 30565
146194	C. helveticus CCUG 30566
146236	C. helveticus CCUG 30683, NCTC 12471
147694	C. helveticus CCUG 34016
147703	C. helveticus CCUG 34042
147709	C. helveticus CCUG 34055
147715	C. helveticus CCUG 34068
147724	C. helveticus CCUG 34092
147737	C. helveticus CCUG 34119
154636	C. helveticus CCUG 54661

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.4
125438	negative	96.962

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98
125438		93.832

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68373	30089 ChEBI	acetate	-	assimilation	from API CAM
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68373	16947 ChEBI	citrate	-	assimilation	from API CAM
68373	17634 ChEBI	D-glucose	-	assimilation	from API CAM
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68373	606565 ChEBI	hippurate	-	hydrolysis	from API CAM
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68373	25115 ChEBI	malate	-	assimilation	from API CAM
68380	17632 ChEBI	nitrate	+	reduction	from API rID32A
68373	17272 ChEBI	propionate	-	assimilation	from API CAM
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68373	78019 ChEBI	triphenyltetrazolium chloride	-	reduction	from API CAM
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68373	16199 ChEBI	urea	-	hydrolysis	from API CAM
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
68373	474053	cefazolin	224 µg	from API CAM
68373	48923	erythromycin	14 µg	from API CAM
68373	100147	nalidixic acid	84 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68373	16136 ChEBI	hydrogen sulfide		from API CAM
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68373	alkaline phosphatase	-	3.1.3.1	from API CAM
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68373	catalase	-	1.11.1.6	from API CAM
68373	esterase	+		from API CAM
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68373	L-arginine arylamidase	-		from API CAM
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68373	urease	-	3.5.1.5	from API CAM
68380	urease	-	3.5.1.5	from API rID32A

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
50151	-	-	+	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	not determinedn.d.
50151	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
50151	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Felidae (Cat)
#Host Body-Site	#Gastrointestinal tract	-
#Infection	#Disease	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
50151	Cat feces,acute colitis	1991-10-29	Berne	Switzerland	CHE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2462120v1 assembly for Campylobacter helveticus CCUG 30563	contig	GCA_024621205	28898.62	28898	48.03

Genome browser: GCA_024621205

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Campylobacter helveticus strain CCUG 30563 16S ribosomal RNA gene, partial sequence.	AF550647	1417		28898

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter helveticus CCUG 30563
NCBI: GCA_024621205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	no	65.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	68.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter helveticus CCUG 30563
NCBI: GCA_024621205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.96	no
125438	anaerobic	anaerobicⓘ	no	83.31	no
125438	aerobic	aerobicⓘ	no	92.25	no
125438	spore-forming	spore-formingⓘ	no	93.83	no
125438	thermophilic	thermophileⓘ	no	87.13	no
125438	flagellated	motile2+ⓘ	yes	64.61	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Detection of Campylobacter spp. in chicken fecal samples by real-time PCR.	Lund M, Nordentoft S, Pedersen K, Madsen M.	J Clin Microbiol	10.1128/jcm.42.11.5125-5132.2004	2004
	Extended multilocus sequence typing system for Campylobacter coli, C. lari, C. upsaliensis, and C. helveticus.	Miller WG, On SL, Wang G, Fontanoz S, Lastovica AJ, Mandrell RE.	J Clin Microbiol	10.1128/jcm.43.5.2315-2329.2005	2005

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#50151	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30563
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68373	Automatically annotated from API CAM .
#68380	Automatically annotated from API rID32A .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter helveticus (CCUG 30563)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API CAM

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_024621205

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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