Name: Afipia sp. B91-007287
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 146146

Type strain:

Species: Afipia sp.

Strain Designation: B91-007287

Variant: genospecies 1

Culture col. no.: CCUG 30459, ATCC 49721, CIP 103518

Strain history: CIP <- 1992, ATCC <- D.J. Brenner, CDC: strain B91-007287 <- Oklahoma State Hlth. Dept., USA: strain GO 383, F872

NCBI tax ID(s): 1871052 (species)

SI-ID 42640

ATCC 49721, CIP 103518, CCUG 30459, NCTC 12723

Special Collections

CCUG
CIP

Other strains from Afipia sp.

Section

When using BacDive for research please cite our paper

Afipia sp. B91-007287 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Human pleural fluid,pulmonary obstruction,fatal.

Gram-negative
motile
rod-shaped
mesophilic
obligate aerobe
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Afipia*
	Full Scientific Name (LPSN)	Afipia Brenner et al. 1992

Synonym

Oligotropha

Information on morphological and physiological properties Morphology

[Ref.: #119581]	Gram stain	negative

[Ref.: #119581]	Cell shape	rod-shaped

[Ref.: #119581]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #119581]

Culture medium

CIP Medium 23

[Ref.: #119581]

Culture medium growth

[Ref.: #119581]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #50093]		growth	37 °C
[Ref.: #119581]		growth	30 °C
[Ref.: #119581]	negative	growth	15 °C
[Ref.: #119581]	negative	growth	22 °C
[Ref.: #119581]	negative	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119581]

Oxygen tolerance

obligate aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119581]	hippurate ChEBI	+	hydrolysis
[Ref.: #119581]	nitrate ChEBI	-	reduction
[Ref.: #119581]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119581]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #119581]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119581]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119581]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119581]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #119581]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119581]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119581]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119581]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119581]	tween esterase	-
[Ref.: #119581]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #50093]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	24.4	17.824
C19:0 CYCLO ω8c	19.6	18.9
11 methyl 18:1 ω7c	13.4	18.081
C16:0	9.5	16
C17:0 CYCLO	8.2	16.888
C16:1 ω5c	7.5	15.908
C17:0	4.9	17
C15:0	3.3	15
C13:0 ISO 2OH	2.3	13.814
C18:0	2.2	18
Unidentified	2.2	17.931
Unidentified	1.4	19.604
C16:1 ω7c	1.2	15.819

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119581]	7563	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #50093]	Sample type/isolated from	Human pleural fluid,pulmonary obstruction,fatal
[Ref.: #50093]	Sampling date	1981
[Ref.: #50093]	Geographic location (country and/or sea, region)	Oklahoma
[Ref.: #50093]	Country	USA
[Ref.: #50093]	Country ISO 3 Code	USA
[Ref.: #50093]	Continent	North America

[Ref.: #119581]	Sample type/isolated from	Human, Pleural liquid
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Oral cavity and Airways	#Pleural fluid
#Host Body-Site	#Oral cavity and airways	#Lung
#Infection	#Patient	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #119581]

Biosafety level

Risk group (French classification)

Availability in culture collections External links

[Ref.: #50093]

Culture collection no.

CCUG 30459, ATCC 49721, CIP 103518

[Ref.: #101065]

SI-ID 42640

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#50093 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30459

#68382

Automatically annotated from API zym .

#101065

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42640.1 )

#119581 Collection of Institut Pasteur ; Curators of the CIP; CIP 103518
* These data were automatically processed and therefore are not curated

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