Name: Staphylococcus saccharolyticus S1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14567

Type strain:

Species: Staphylococcus saccharolyticus

Strain Designation: S1

Culture col. no.: DSM 20359, ATCC 14953, JCM 1768, CCUG 24040, CCUG 9989, CIP 103275, NCTC 11807, NRRL B-14778, VPI 5661

Strain history: CIP <- 1989, DSM <- ATCC <- W.E.C. Moore, Blacksburg, USA: strain VPI 5661 <- Foubert: strain S1, Peptococcus saccharolyticus

NCBI tax ID(s): 33028 (species)

SI-ID 36214

ATCC 14953, CCUG 9989, CCUG 24040, DSM 20359, CIP 103275, NCTC 11807, LMG 22204, NRRL B-14778, JCM 1768

Other strains from Staphylococcus saccharolyticus

Section

Staphylococcus saccharolyticus S1 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from plasma.

coccus-shaped
Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus saccharolyticus**
	Full Scientific Name (LPSN)	Staphylococcus saccharolyticus (Foubert and Douglas 1948) Kilpper-Bälz and Schleifer 1984

	Synonym	Peptococcus saccharolyticus
	Synonym	"Micrococcus* saccharolyticus"*

Information on morphological and physiological properties Morphology

[Ref.: #122337]	Gram stain	positive

[Ref.: #122337]	Cell shape	coccus-shaped

[Ref.: #122337]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8621]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8621]

Culture medium growth

[Ref.: #8621]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8621]

Culture medium composition

expand / minimize

[Ref.: #8621]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #8621]

Culture medium growth

[Ref.: #8621]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8621]

Culture medium composition

expand / minimize

[Ref.: #34237]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34237]

Culture medium growth

[Ref.: #34237]

Culture medium composition

expand / minimize

[Ref.: #122337]

Culture medium

CIP Medium 3

[Ref.: #122337]

Culture medium growth

[Ref.: #122337]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8621]	growth	37 °C
[Ref.: #34237]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #8621]	Temperature range	mesophilic
[Ref.: #34237]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8621]	Oxygen tolerance	anaerobe
[Ref.: #122337]	Oxygen tolerance	facultative anaerobe

[Ref.: #8621]	Murein short key	A11.03
[Ref.: #8621]	Murein types	A3alpha L-Lys-Gly₂_-₄-L-Ser₁_-₂-Gly

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-mannitol ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122337]	nitrate ChEBI	+	reduction
[Ref.: #122337]	nitrite ChEBI	-	reduction
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122337]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	trehalose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #122337]	tributyrin ChEBI	-	hydrolysis
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	urea ChEBI	+	hydrolysis	* from API ID32STA
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122337]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122337]		indole ChEBI	no
[Ref.: #68375]		acetoin ChEBI	yes	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #122337]		acetoin ChEBI	+
[Ref.: #68375]		acetoin ChEBI	+	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #122337]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #122337]	beta-galactosidase	+	3.2.1.23
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	-	3.2.1.31	* from API ID32STA
[Ref.: #122337]	catalase	+	1.11.1.6
[Ref.: #122337]	DNase	-
[Ref.: #122337]	gelatinase	-
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #122337]	lecithinase	-
[Ref.: #122337]	lysine decarboxylase	-	4.1.1.18
[Ref.: #122337]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #122337]	oxidase	-
[Ref.: #68375]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API ID32STA
[Ref.: #122337]	urease	+	3.5.1.5
[Ref.: #68375]	urease	+	3.5.1.5	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122337]	9238	not determinedn.d.	+	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #8621]	6233	+	+	-	-	+	+	+	-	-	-	-	-	-	-	+	+	-	-	-	-	+	-	+	-	-	-
[Ref.: #8621]	6042	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #8621]	6041	+	-	-	-	+	+	+	+	+	-	-	-	-	-	+	+	-	-	+	-	-	+	+	+	-	-
[Ref.: #8621]	6040	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #8621]	6039	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8621]	Sample type/isolated from	plasma

[Ref.: #67770]	Sample type/isolated from	Plasma

[Ref.: #122337]	Sample type/isolated from	Human, Plasma
* marker position based on {}

Isolation sources categories

#Host Body Product

#Fluids

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_113405 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	284
Soil Samples	44
Animal Samples	8287
Plant Samples	18
Total Samples	8633

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8621]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122337]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8621]	Staphylococcus saccharolyticus strain JCM 1768 16S ribosomal RNA, partial sequence	NR_113405	1512	GenBank	33028 tax ID
[Ref.: #20218]	Staphylococcus saccharolyticus 16S ribosomal RNA (16S rRNA) gene	L37602	1527	ENA	33028 tax ID	*
[Ref.: #20218]	Staphylococcus saccharolyticus ATCC 14953 16S rRNA gene, partial sequence	U02922	398	ENA	33028 tax ID	*
[Ref.: #20218]	Staphylococcus saccharolyticus strain DSM 20359 16S ribosomal RNA gene, partial sequence	AY688087	464	ENA	33028 tax ID	*
[Ref.: #20218]	Staphylococcus saccharolyticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 1768	AB646616	1512	ENA	33028 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Staphylococcus saccharolyticus NCTC11807	GCA_900458815	contig	GenBank	33028 tax ID
[Ref.: #66792]	Staphylococcus saccharolyticus NCTC 11807	GCA_003968885	scaffold	GenBank	33028 tax ID	*
[Ref.: #66792]	Staphylococcus saccharolyticus strain FDAARGOS_1074	33028.25	complete	PATRIC	33028 tax ID	*
[Ref.: #66792]	Staphylococcus saccharolyticus strain NCTC 11807	33028.10	wgs	PATRIC	33028 tax ID	*
[Ref.: #66792]	Staphylococcus saccharolyticus strain NCTC11807	33028.9	wgs	PATRIC	33028 tax ID	*

[Ref.: #8621]

GC-content

34.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus saccharolyticus strain FDAARGOS_1074 strain Not applicable PATRIC: 33028.25
[Ref.: #69480]	gram-positive	yes	90.516	no
[Ref.: #69480]	anaerobic	no	98.829	yes
[Ref.: #69480]	halophile	yes	93.395	no
[Ref.: #69480]	spore-forming	no	92.72	no
[Ref.: #69480]	glucose-util	yes	89.049	no
[Ref.: #69480]	motile	no	92.214	no
[Ref.: #69480]	flagellated	no	92.527	no
[Ref.: #69480]	aerobic	yes	84.124	yes
[Ref.: #69480]	thermophile	no	99.857	yes
[Ref.: #69480]	glucose-ferment	yes	82.723	no

Availability in culture collections External links

[Ref.: #8621]

Culture collection no.

DSM 20359, ATCC 14953, JCM 1768, CCUG 24040, CCUG 9989, CIP 103275, NCTC 11807, NRRL B-14778, VPI 5661

[Ref.: #83697]

SI-ID 36214

Literature:

Topic	Title	Authors	Journal	DOI	Year
Cultivation	Stimulation of the growth of cutaneous strains of Peptococcus saccharolyticus by iron, haematin and blood.	Strom MS, Douglas HC, Evans CA	J Gen Microbiol	10.1099/00221287-128-2-387	1982	*

References

#8621

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20359

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34237 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68375

Automatically annotated from API ID32STA .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83697

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36214.1 )

#122337 Collection of Institut Pasteur ; Curators of the CIP; CIP 103275
* These data were automatically processed and therefore are not curated

Change proposal

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Search for species Staphylococcus saccharolyticus in external resources:
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Staphylococcus saccharolyticus strain FDAARGOS_1074 strain Not applicable

Change proposal

Change proposal