Staphylococcus gallinarum (DSM 20610, ATCC 35539, CCM 3572)

Name: Staphylococcus gallinarum (DSM 20610, ATCC 35539, CCM 3572)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14542

Type strain

Culture col. no. DSM 20610 ATCC 35539 CCM 3572 CCUG 15600 VIII 1 2 more

NCBI tax ID(s) 1293

Special Collections DSMZ CCUG CIP

History <- K.H. Schleifer <- L.A. Devriese, VIII1 1992, L. Devriese, Med. Vet. Univ., Gent, Belgium: strain VIII 1 CIP <- 1992, L. Devriese, Ghent Univ., Ghent, Belgium: strain VIII 1

Links

Staphylococcus gallinarum DSM 20610 is an obligate aerobe, Gram-positive, coccus-shaped bacterium that was isolated from skin of chicken.

Gram-positive coccus-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13065

LMG 19121,ATCC 35539,CCM 3572,DSM 20610,NCTC 12195,CCUG 15600,CIP 103504,KCTC 3585,BCRC 13913,CCRC 13913,NRRL B-14763,CNCTC 5684

@ref 20215

Last LPSN update 2026-02-09 11:21:26

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus gallinarum

Full scientific name Staphylococcus gallinarum Devriese et al. 1983

BacDive ID	Other strains from **Staphylococcus gallinarum** (4)	Type strain
134521	S. gallinarum CIP 105918, ATCC 700401, CCUG 28809
145597	S. gallinarum CCUG 28937
153697	S. gallinarum CCUG 50672
153698	S. gallinarum CCUG 50673

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
119517	positive	coccus-shaped
125439	positive			95.5

Colony morphology

@ref	Type of hemolysis	Incubation period
8958	gamma	1-2 days
119517

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8958	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8958	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40679	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
119517	CIP Medium 3	Medium recipe at CIP
119517	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8958	positive	growth	37
40679	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119517	obligate aerobe
125439	microaerophile	94.9

Murein

@ref	Murein short key	Type
8958	A11.03	A3alpha L-Lys-Gly₂_-₄-L-Ser₁_-₂-Gly

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68375	22599 ChEBI	arabinose	+	fermentation	from API ID32STA
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68375	29016 ChEBI	arginine	-	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	+	fermentation	from API ID32STA
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68375	15824 ChEBI	D-fructose	+	fermentation	from API ID32STA
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68375	16899 ChEBI	D-mannitol	+	fermentation	from API ID32STA
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68375	16024 ChEBI	D-mannose	+	fermentation	from API ID32STA
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68375	4853 ChEBI	esculin	+	hydrolysis	from API ID32STA
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68375	17716 ChEBI	lactose	+	fermentation	from API ID32STA
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68375	17306 ChEBI	maltose	+	fermentation	from API ID32STA
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68375	59640 ChEBI	N-acetylglucosamine	+	fermentation	from API ID32STA
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
119517	17632 ChEBI	nitrate	+	reduction
119517	16301 ChEBI	nitrite	-	reduction
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68375	16634 ChEBI	raffinose	+	fermentation	from API ID32STA
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68375	17992 ChEBI	sucrose	+	fermentation	from API ID32STA
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
119517	35020 ChEBI	tributyrin	-	hydrolysis
68375	32528 ChEBI	turanose	+	fermentation	from API ID32STA
68375	16199 ChEBI	urea	+	hydrolysis	from API ID32STA
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	ChEBI	Metabolite	Is resistant	Resistance conc.	Is sensitive
119517		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
68375	28368	novobiocin		1.8 µg		from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68375	15688 ChEBI	acetoin		from API ID32STA
119517	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68375	15688 ChEBI	acetoin	-	from API ID32STA
119517	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
119517	alcohol dehydrogenase	-	1.1.1.1
68375	alkaline phosphatase	+	3.1.3.1	from API ID32STA
68375	arginine dihydrolase	-	3.5.3.6	from API ID32STA
119517	beta-galactosidase	+	3.2.1.23
68375	beta-galactosidase	+	3.2.1.23	from API ID32STA
68375	beta-glucosidase	+	3.2.1.21	from API ID32STA
68375	beta-glucuronidase	+	3.2.1.31	from API ID32STA
8958	catalase	+	1.11.1.6
119517	catalase	+	1.11.1.6
119517	coagulase	-
8958	cytochrome-c oxidase	-	1.9.3.1
119517	DNase	-
119517	gelatinase	-
68375	L-arginine arylamidase	-		from API ID32STA
119517	lysine decarboxylase	-	4.1.1.18
119517	ornithine decarboxylase	-	4.1.1.17
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
119517	oxidase	-
119517	urease	+	3.5.1.5
68375	urease	+	3.5.1.5	from API ID32STA

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119517	not determinedn.d.	+/-	-	-	+	+/-	+/-	-	-	-	+/-	+	+	+	-	+/-	-	-	+	+	-	-	+	+/-	+	+	+	+	+	+	+/-	+	-	-	-	+/-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
8958	+	-	-	+	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	+/-	+	+	+	+	+	+
8958	+	-	-	+	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	+/-	+	+	+	+	+	+
8958	+	-	-	+	+	+	+	+	+	-	+	+	-	+	+	-	+	-	+	-	+	+	+	+	+	+
8958	+	-	-	+	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	-	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	#Chicken
#Host Body-Site	#Organ	#Skin, Nail, Hair

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Sampling date
8958	skin of chicken
46287	Skin of chicken				1983-05-18
119517	Animal, Chicken, nares	Belgium	BEL	Europe

Taxonmaps

69479

Global distribution of 16S sequence D83366 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	1554
Soil Samples	930
Animal Samples	23674
Plant Samples	763
Total Samples	26921

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8958	1	Risk group (German classification) According to TRBA 466
119517	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM87589v1 assembly for Staphylococcus gallinarum DSM 20610	contig	GCA_000875895	1293.6	8117277454	1293	23.93

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Staphylococcus gallinarum strain DSM 20610 16S ribosomal RNA gene, partial sequence	AY688059	464	1293
8958	Staphylococcus gallinarum gene for 16S rRNA, partial sequence, strain: ATCC 35539	D83366	1477	1293
124043	Staphylococcus gallinarum strain DSM 20610 16S ribosomal RNA gene, partial sequence.	MF678937	1283	1293
124043	Staphylococcus gallinarum strain DSM 20610 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence.	MF678881	4322	1293

GC content

8958

GC-content (mol%)34.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus gallinarum DSM 20610
NCBI: GCA_000875895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	84.00	no
125439	motility	BacteriaNetⓘ	no	77.70	no
125439	gram_stain	BacteriaNetⓘ	positive	95.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	94.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus gallinarum strain DSM 20610
PATRIC: 1293.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.81	no
125438	anaerobic	anaerobicⓘ	no	99.29	no
125438	spore-forming	spore-formingⓘ	no	68.46	no
125438	aerobic	aerobicⓘ	yes	73.41	yes
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	76.41	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Synthesis, characterization and application of silk sericin-based silver nanocomposites for antibacterial and food coating solutions.	Shaw S, Mondal R, Dam P, Mandal A, Acharya R, Manna S, Gangopadhyay D, Mandal AK.	RSC Adv	10.1039/d4ra07056a	2024
Phylogeny	Phenotypic and Genotypic Identification of Bacteria Isolated From Traditionally Prepared Dry Starters of the Eastern Himalayas.	Pradhan P, Tamang JP.	Front Microbiol	10.3389/fmicb.2019.02526	2019
Phylogeny	Identification of Staphylococcus spp. by PCR-restriction fragment length polymorphism of gap gene.	Yugueros J, Temprano A, Sanchez M, Luengo JM, Naharro G.	J Clin Microbiol	10.1128/jcm.39.10.3693-3695.2001	2001
Phylogeny	A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
Enzymology	Quantitative detection of Clostridium perfringens in the broiler fowl gastrointestinal tract by real-time PCR.	Wise MG, Siragusa GR.	Appl Environ Microbiol	10.1128/aem.71.7.3911-3916.2005	2005
Pathogenicity	Real-time PCR assay for detection of fluoroquinolone resistance associated with grlA mutations in Staphylococcus aureus.	Lapierre P, Huletsky A, Fortin V, Picard FJ, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.41.7.3246-3251.2003	2003
Enzymology	Development of a rapid PCR assay specific for Staphylococcus saprophyticus and application to direct detection from urine samples.	Martineau F, Picard FJ, Menard C, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.38.9.3280-3284.2000	2000
Phylogeny	Development of a PCR assay for identification of staphylococci at genus and species levels.	Martineau F, Picard FJ, Ke D, Paradis S, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.39.7.2541-2547.2001	2001
	Identification of a methicillin-resistant strain of Staphylococcus caprae from a human clinical specimen.	Kanda K, Suzuki E, Hiramatsu K, Oguri T, Miura H, Ezaki T, Yokota T.	Antimicrob Agents Chemother	10.1128/aac.35.1.174	1991
Phylogeny	Rapid and accurate species-level identification of coagulase-negative staphylococci by using the sodA gene as a target.	Poyart C, Quesne G, Boumaila C, Trieu-Cuot P.	J Clin Microbiol	10.1128/jcm.39.12.4296-4301.2001	2001
	Large-Scale Development of Antibacterial Scaffolds: Gentamicin Sulfate-Loaded Biodegradable Nanofibers for Gastrointestinal Applications.	Klicova M, Mullerova S, Rosendorf J, Klapstova A, Jirkovec R, Erben J, Petrzilkova M, Raabova H, Satinsky D, Melicherikova J, Palek R, Liska V, Horakova J.	ACS Omega	10.1021/acsomega.3c05924	2023
Phylogeny	Comparative study using various methods for identification of Staphylococcus species in clinical specimens.	Layer F, Ghebremedhin B, Moder KA, Konig W, Konig B.	J Clin Microbiol	10.1128/jcm.00226-06	2006
	Direct testing of blood culture for detection of the serotype 5 and 8 capsular polysaccharides of Staphylococcus aureus.	Boutonnier A, Nato F, Bouvet A, Lebrun L, Audurier A, Mazie JC, Fournier JM.	J Clin Microbiol	10.1128/jcm.27.5.989-993.1989	1989
Genetics	Draft Genome Sequence of Staphylococcus gallinarum DSM 20610T, Originally Isolated from the Skin of a Chicken.	Shi D, Fang D, Hu X, Li A, Lv L, Guo J, Chen Y, Wu W, Guo F, Li L	Genome Announc	10.1128/genomeA.00580-15	2015
Phylogeny	Staphylococcus nepalensis sp. nov., isolated from goats of the Himalayan region.	Spergser J, Wieser M, Taubel M, Rossello-Mora RA, Rosengarten R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.02646-0	2003

References

#8958	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20610
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40679	; Curators of the CIP;
#46287	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15600
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68375	Automatically annotated from API ID32STA .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119517	Collection of Institut Pasteur ; Curators of the CIP; CIP 103504
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Staphylococcus gallinarum (DSM 20610, ATCC 35539, CCM 3572)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API 50CHac

API ID32STA

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000875895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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