Name: Staphylococcus gallinarum DSM 20610
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14542

Type strain:

Species: Staphylococcus gallinarum

Culture col. no.: DSM 20610, ATCC 35539, CCM 3572, CCUG 15600, VIII 1, CIP 103504, GIFU 10758

Strain history: CIP <- 1992, L. Devriese, Ghent Univ., Ghent, Belgium: strain VIII 1

NCBI tax ID(s): 1293 (species)

SI-ID 13065

LMG 19121, ATCC 35539, CCM 3572, DSM 20610, NCTC 12195, CCUG 15600, CIP 103504, KCTC 3585, BCRC 13913, CCRC 13913, NRRL B-14763, CNCTC 5684

Other strains from Staphylococcus gallinarum

S. gallinarum CIP 105918, ATCC 700401, CCUG 28809
S. gallinarum CCUG 28937
S. gallinarum CCUG 50672
S. gallinarum CCUG 50673

Section

Staphylococcus gallinarum DSM 20610 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from skin of chicken.

coccus-shaped
Gram-positive
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus gallinarum**
	Full Scientific Name (LPSN)	Staphylococcus gallinarum Devriese et al. 1983

Information on morphological and physiological properties Morphology

[Ref.: #119517]	Gram stain	positive

[Ref.: #119517]	Cell shape	coccus-shaped

[Ref.: #119517]	Motility	no

[Ref.: #8958]	Type of hemolysis	gamma
[Ref.: #8958]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8958]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8958]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8958]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #8958]

Culture medium composition

expand / minimize

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Culture medium

MEDIUM 3 - Columbia agar

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Culture medium growth

[Ref.: #40679]

Culture medium composition

expand / minimize

[Ref.: #119517]

Culture medium

CIP Medium 3

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 72

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #8958]			growth	37 °C
[Ref.: #40679]			growth	37 °C

[Ref.: #8958]	Temperature range	mesophilic
[Ref.: #40679]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119517]

Oxygen tolerance

obligate aerobe

[Ref.: #8958]	Murein short key	A11.03
[Ref.: #8958]	Murein types	A3alpha L-Lys-Gly₂_-₄-L-Ser₁_-₂-Gly

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arabinose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	arginine ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	cellobiose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-mannitol ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-mannose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	D-sorbitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	esculin ChEBI	+	hydrolysis	* from API ID32STA
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	lactose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	maltose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	N-acetylglucosamine ChEBI	+	fermentation	* from API ID32STA
[Ref.: #119517]	nitrate ChEBI	+	reduction
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #119517]	nitrite ChEBI	-	reduction
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	raffinose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	sucrose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119517]	tributyrin ChEBI	-	hydrolysis
[Ref.: #68375]	turanose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	+	hydrolysis	* from API ID32STA
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance	Concentration
[Ref.: #119517]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes
[Ref.: #68375]		novobiocin ChEBI		yes	1.8	µg	* from API ID32STA

	Metabolite production	Metabolite	Production
[Ref.: #119517]		indole ChEBI	no
[Ref.: #68375]		acetoin ChEBI	no	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #119517]		acetoin ChEBI	-
[Ref.: #68375]		acetoin ChEBI	-	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #119517]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68375]	alkaline phosphatase	+	3.1.3.1	* from API ID32STA
[Ref.: #68375]	arginine dihydrolase	-	3.5.3.6	* from API ID32STA
[Ref.: #119517]	beta-galactosidase	+	3.2.1.23
[Ref.: #68375]	beta-galactosidase	+	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	+	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	+	3.2.1.31	* from API ID32STA
[Ref.: #8958]	catalase	+	1.11.1.6
[Ref.: #119517]	catalase	+	1.11.1.6
[Ref.: #119517]	coagulase	-
[Ref.: #8958]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #119517]	DNase	-
[Ref.: #119517]	gelatinase	-
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #119517]	lysine decarboxylase	-	4.1.1.18
[Ref.: #119517]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #119517]	oxidase	-
[Ref.: #119517]	urease	+	3.5.1.5
[Ref.: #68375]	urease	+	3.5.1.5	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119517]	9291	not determinedn.d.	+/-	-	-	+	+/-	+/-	-	-	-	+/-	+	+	+	-	+/-	-	-	+	+	-	-	+	+/-	+	+	+	+	+	+	+/-	+	-	-	-	+/-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #8958]	6069	+	-	-	+	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	+/-	+	+	+	+	+	+
[Ref.: #8958]	6068	+	-	-	+	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	+/-	+	+	+	+	+	+
[Ref.: #8958]	6067	+	-	-	+	+	+	+	+	+	-	+	+	-	+	+	-	+	-	+	-	+	+	+	+	+	+
[Ref.: #8958]	6066	+	-	-	+	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	-	+	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8958]	Sample type/isolated from	skin of chicken

[Ref.: #46287]	Sample type/isolated from	Skin of chicken
[Ref.: #46287]	Sampling date	1983-05-18

[Ref.: #119517]	Sample type/isolated from	Animal, Chicken, nares
[Ref.: #119517]	Country	Belgium
[Ref.: #119517]	Country ISO 3 Code	BEL
[Ref.: #119517]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D83366 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	1554
Soil Samples	930
Animal Samples	23674
Plant Samples	763
Total Samples	26921

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8958]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119517]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8958]	Staphylococcus gallinarum gene for 16S rRNA, partial sequence, strain: ATCC 35539	D83366	1477	ENA	1293 tax ID
[Ref.: #20218]	Staphylococcus gallinarum strain DSM 20610 16S ribosomal RNA gene, partial sequence	AY688059	464	ENA	1293 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus gallinarum DSM 20610	GCA_000875895	contig	GenBank	1293 tax ID	*
[Ref.: #66792]	Staphylococcus gallinarum strain DSM 20610	1293.6	wgs	PATRIC	1293 tax ID	*

[Ref.: #8958]

GC-content

34.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus gallinarum strain DSM 20610 PATRIC: 1293.6
[Ref.: #69480]	motile	no	87.081	no
[Ref.: #69480]	gram-positive	yes	90.931	no
[Ref.: #69480]	anaerobic	no	99.374	no
[Ref.: #69480]	aerobic	yes	90.923	no
[Ref.: #69480]	halophile	yes	91.371	no
[Ref.: #69480]	spore-forming	no	88.097	no
[Ref.: #69480]	glucose-util	yes	91.023	no
[Ref.: #69480]	flagellated	no	87.248	no
[Ref.: #69480]	thermophile	no	99.883	no
[Ref.: #69480]	glucose-ferment	yes	83.126	yes

Availability in culture collections External links

[Ref.: #8958]

Culture collection no.

DSM 20610, ATCC 35539, CCM 3572, CCUG 15600, VIII 1, CIP 103504, GIFU 10758

[Ref.: #83673]

SI-ID 13065

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Staphylococcus gallinarum DSM 20610T, Originally Isolated from the Skin of a Chicken.	Shi D, Fang D, Hu X, Li A, Lv L, Guo J, Chen Y, Wu W, Guo F, Li L	Genome Announc	10.1128/genomeA.00580-15	2015	*
Phylogeny	Staphylococcus nepalensis sp. nov., isolated from goats of the Himalayan region.	Spergser J, Wieser M, Taubel M, Rossello-Mora RA, Rosengarten R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.02646-0	2003	*

References

#8958

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20610

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40679 ; Curators of the CIP;
#46287 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15600

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68375

Automatically annotated from API ID32STA .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83673

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13065.1 )

#119517 Collection of Institut Pasteur ; Curators of the CIP; CIP 103504
* These data were automatically processed and therefore are not curated

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Staphylococcus gallinarum strain DSM 20610

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