Name: Geobacillus jurassicus DS1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1452

Type strain:

Species: Geobacillus jurassicus

Strain Designation: DS1, R-35651

Culture col. no.: DSM 15726, LMG 23069, VKM B-2301

Strain history: <- T. N. Nazina; DS1 <- D. Sh. Sokolova

NCBI tax ID(s): 1223502 (strain), 235932 (species)

SI-ID 138983

CCM 7224, DSM 15726, VKM B-2301, LMG 23069, BCRC 17566, CCRC 17566

Other strains from Geobacillus jurassicus

G. jurassicus DS2, R-32597, DSM 15727

Section

Geobacillus jurassicus DS1 is an aerobe, chemoorganotroph, spore-forming bacterium that forms circular colonies and was isolated from formation water of the Dayang oil field .

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
chemoorganotroph
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Geobacillus*
	Species	**Geobacillus jurassicus**
	Full Scientific Name (LPSN)	Geobacillus jurassicus Nazina et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #23042]	Gram stain	positive

[Ref.: #23042]	Cell shape	rod-shaped

[Ref.: #23042]	Motility	yes

[Ref.: #23042]	Flagellum arrangement	peritrichous

[Ref.: #23042]	Colony size	2.0 mm
[Ref.: #23042]	Colony color	colourless
[Ref.: #23042]	Colony shape	circular
[Ref.: #23042]	Incubation period	1-2 days
[Ref.: #23042]	Cultivation medium used	nutrient agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

PLATE COUNT AGAR (DSMZ Medium 464)

[Ref.: #6084]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #6084]

Culture medium composition

expand / minimize

[Ref.: #23042]

Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

trypticase soy agar

[Ref.: #23042]

Culture medium growth

		Temperature
[Ref.: #6084]	growth	55 °C
[Ref.: #23042]	growth	45.0-65.0 °C
[Ref.: #23042]	optimum	58.0-60.0 °C

[Ref.: #6084]	Temperature range	thermophilic
[Ref.: #23042]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #23042]			optimum	7.0-7.2
[Ref.: #23042]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23042]

Oxygen tolerance

aerobe

[Ref.: #23042]

Nutrition type

chemoorganotroph

[Ref.: #23042]	Spore description	ellipsoidal,subterminal,in slightly swollen sporangia
[Ref.: #23042]	Type of spore	spore
[Ref.: #23042]	Ability of spore formation	yes

	Salt		Salt conc.
[Ref.: #23042]	NaCl	growth	5.0-5.5	%(w/v)
[Ref.: #23042]	NaCl	growth	1.0	%(w/v)
[Ref.: #23042]	NaCl	growth	5.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23042]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23042]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23042]	alanine ChEBI	-	growth
[Ref.: #23042]	amygdalin ChEBI	-	builds acid from
[Ref.: #23042]	arbutin ChEBI	-	builds acid from
[Ref.: #23042]	butanol ChEBI	-	growth
[Ref.: #23042]	casein	+	hydrolysis
[Ref.: #23042]	cellobiose ChEBI	-	builds gas from
[Ref.: #23042]	cellobiose ChEBI	+	builds acid from
[Ref.: #23042]	citrate ChEBI	-	carbon source
[Ref.: #23042]	D-arabinose ChEBI	-	builds acid from
[Ref.: #23042]	D-arabitol ChEBI	-	builds acid from
[Ref.: #23042]	D-fructose ChEBI	-	builds gas from
[Ref.: #23042]	D-fructose ChEBI	+	builds acid from
[Ref.: #23042]	D-fucose ChEBI	-	builds acid from
[Ref.: #23042]	D-glucose ChEBI	-	builds gas from
[Ref.: #23042]	D-glucose ChEBI	+	builds acid from
[Ref.: #23042]	D-lyxose ChEBI	-	builds acid from
[Ref.: #23042]	D-mannose ChEBI	-	builds gas from
[Ref.: #23042]	D-mannose ChEBI	+	builds acid from
[Ref.: #23042]	D-tagatose ChEBI	-	builds acid from
[Ref.: #23042]	D-xylose ChEBI	-	builds gas from
[Ref.: #23042]	D-xylose ChEBI	+	builds acid from
[Ref.: #23042]	erythritol ChEBI	-	builds acid from
[Ref.: #23042]	esculin ChEBI	+	hydrolysis
[Ref.: #23042]	ferrous ion ChEBI	-	electron acceptor
[Ref.: #23042]	formate ChEBI	-	growth
[Ref.: #23042]	galactitol ChEBI	-	builds acid from
[Ref.: #23042]	galactose ChEBI	-	builds gas from
[Ref.: #23042]	galactose ChEBI	+	builds acid from
[Ref.: #23042]	gelatin ChEBI	+	hydrolysis
[Ref.: #23042]	gentiobiose ChEBI	-	builds acid from
[Ref.: #23042]	gluconate ChEBI	-	builds acid from
[Ref.: #23042]	glucose ChEBI	-	fermentation
[Ref.: #23042]	glycerol ChEBI	-	builds gas from
[Ref.: #23042]	glycerol ChEBI	+	builds acid from
[Ref.: #23042]	glycogen ChEBI	-	builds acid from
[Ref.: #23042]	inulin ChEBI	-	builds acid from
[Ref.: #23042]	isobutanol ChEBI	-	growth
[Ref.: #23042]	L-arabinose ChEBI	-	builds gas from
[Ref.: #23042]	L-arabinose ChEBI	+	builds acid from
[Ref.: #23042]	L-arabitol ChEBI	-	builds acid from
[Ref.: #23042]	L-fucose ChEBI	-	builds acid from
[Ref.: #23042]	L-glutamate ChEBI	-	growth
[Ref.: #23042]	L-sorbose ChEBI	-	builds acid from
[Ref.: #23042]	L-xylose ChEBI	-	builds acid from
[Ref.: #23042]	lactose ChEBI	-	builds acid from
[Ref.: #23042]	maltose ChEBI	-	builds gas from
[Ref.: #23042]	maltose ChEBI	+	builds acid from
[Ref.: #23042]	mannitol ChEBI	-	builds gas from
[Ref.: #23042]	mannitol ChEBI	+	builds acid from
[Ref.: #23042]	melezitose ChEBI	-	builds gas from
[Ref.: #23042]	melezitose ChEBI	+	builds acid from
[Ref.: #23042]	melibiose ChEBI	-	builds acid from
[Ref.: #23042]	methanol ChEBI	-	growth
[Ref.: #23042]	methyl D-glucoside ChEBI	-	builds gas from
[Ref.: #23042]	methyl D-glucoside ChEBI	+	builds acid from
[Ref.: #23042]	myo-inositol ChEBI	-	builds acid from
[Ref.: #23042]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #23042]	nitrate ChEBI	+	reduction
[Ref.: #23042]	nutrient broth	+	growth
[Ref.: #23042]	O-nitrophenyl-beta-D-galactopyranosid	-	hydrolysis
[Ref.: #23042]	phenol ChEBI	-	growth
[Ref.: #23042]	phenylacetate ChEBI	-	growth
[Ref.: #23042]	potato agar	+	growth
[Ref.: #23042]	propanol ChEBI	-	growth
[Ref.: #23042]	propionate ChEBI	-	growth
[Ref.: #23042]	raffinose ChEBI	-	builds acid from
[Ref.: #23042]	rhamnose ChEBI	-	builds acid from
[Ref.: #23042]	ribitol ChEBI	-	builds acid from
[Ref.: #23042]	ribose ChEBI	-	builds gas from
[Ref.: #23042]	ribose ChEBI	+	builds acid from
[Ref.: #23042]	salicin ChEBI	-	builds acid from
[Ref.: #23042]	serine ChEBI	-	growth
[Ref.: #23042]	sorbitol ChEBI	-	builds acid from
[Ref.: #23042]	starch ChEBI	-	builds gas from
[Ref.: #23042]	starch ChEBI	+	builds acid from
[Ref.: #23042]	starch ChEBI	+	hydrolysis
[Ref.: #23042]	sucrose ChEBI	-	builds gas from
[Ref.: #23042]	sucrose ChEBI	+	builds acid from
[Ref.: #23042]	trehalose ChEBI	-	builds gas from
[Ref.: #23042]	trehalose ChEBI	+	builds acid from
[Ref.: #23042]	tryptophan ChEBI	-	energy source
[Ref.: #23042]	turanose ChEBI	-	builds gas from
[Ref.: #23042]	turanose ChEBI	+	builds acid from
[Ref.: #23042]	tyrosine ChEBI	-	degradation
[Ref.: #23042]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23042]	acetoin ChEBI	no
[Ref.: #23042]	dihydroxyacetone ChEBI	yes
[Ref.: #23042]	hydrogen sulfide ChEBI	no
[Ref.: #23042]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test	Citrate test
[Ref.: #23042]	acetoin ChEBI	-
[Ref.: #23042]	citrate ChEBI				-
[Ref.: #23042]	glucose ChEBI		-
[Ref.: #23042]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #23042]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23042]	beta-galactosidase	-	3.2.1.23
[Ref.: #23042]	catalase	+	1.11.1.6
[Ref.: #23042]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23042]	lecithinase	-
[Ref.: #23042]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23042]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #23042]	tryptophan deaminase	-	4.1.99.1
[Ref.: #23042]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6084]	Sample type/isolated from	formation water of the Dayang oil field (Kongdian area)
[Ref.: #6084]	Geographic location (country and/or sea, region)	Hebei Province
[Ref.: #6084]	Country	China
[Ref.: #6084]	Country ISO 3 Code	CHN
[Ref.: #6084]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN428697 (>99% sequence identity) for Geobacillus from Microbeatlas

Aquatic Samples	94
Soil Samples	44
Animal Samples	263
Plant Samples	25
Total Samples	426

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6084]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6084]	Geobacillus jurassicus strain DS1 16S ribosomal RNA gene, partial sequence	AY312404	1520	ENA	235932 tax ID
[Ref.: #6084]	Geobacillus jurassicus partial 16S rRNA gene, strain R-35651	FN428697	1510	ENA	1223502 tax ID
[Ref.: #20218]	Geobacillus jurassicus strain DSM 15726 16S-23S ribosomal RNA intergenic spacer and tRNA-Ile gene, partial sequence; and tRNA-Ala gene, complete sequence	EU157943	349	ENA	1223502 tax ID	*

[Ref.: #6084]

GC-content

54.5 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #6084]

Culture collection no.

DSM 15726, LMG 23069, VKM B-2301

[Ref.: #71101]

SI-ID 138983

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geobacillus jurassicus sp. nov., a new thermophilic bacterium isolated from a high-temperature petroleum reservoir, and the validation of the Geobacillus species.	Nazina TN, Sokolova DSh, Grigoryan AA, Shestakova NM, Mikhailova EM, Poltaraus AB, Tourova TP, Lysenko AM, Osipov GA, Belyaev SS	Syst Appl Microbiol	10.1016/j.syapm.2004.09.001	2005	*

References

#6084

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15726

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23042

An Coorevits,Anna E. Dinsdale,Gillian Halket,Liesbeth Lebbe,Paul De Vos,Anita Van Landschoot,Niall A. Logan: Taxonomic revision of the genus Geobacillus : emendation of Geobacillus , G. stearothermophilus , G. jurassicus , G. toebii , G. thermodenitrificans and G. thermoglucosidans (nom. corrig., formerly 'thermoglucosidasius'); transfer of Bacillus thermantarcticus to the genus as G. thermantarcticus comb. nov.; proposal of Caldibacillus debilis gen. nov., comb. nov.; transfer of G. tepidamans to Anoxybacillus as A. tepidamans comb. nov.; and proposal of Anoxybacillus caldiproteolyticus sp. nov.. IJSEM 62: 1470 - 1485 2012 ( DOI 10.1099/ijs.0.030346-0 , PubMed 21856988 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71101

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138983.1 )

* These data were automatically processed and therefore are not curated

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