Rhodococcus hoagii (CCUG 27823, ATCC 33707)

Name: Rhodococcus hoagii (CCUG 27823, ATCC 33707)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 145183

Type strain

Culture col. no. CCUG 27823 ATCC 33707

NCBI tax ID(s) 43767

Special Collections CCUG

Links

Rhodococcus hoagii CCUG 27823 is a bacterium that was isolated from Human abscess.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 40638

ATCC 33707,CCUG 27823,CNCTC 7026

@ref 20215

Last LPSN update 2026-05-29 08:40:52

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Rhodococcus

Species Rhodococcus hoagii

Full scientific name Rhodococcus hoagii (Morse 1912) Kämpfer et al. 2014

Synonyms (2)

Corynebacterium hoagii
"Bacillus hoagii"

BacDive ID	Other strains from Rhodococcus hoagii (31)	Type strain
10842	R. hoagii DSM 20295, ATCC 7005, CCUG 20991, CIP 81.17, ... (type strain)
10849	R. hoagii RW2/1, DSM 30791
130476	R. hoagii DSM 26605, NCIMB 10027
130477	R. hoagii VI1, DSM 26606
130478	R. hoagii CV1, DSM 26607
130479	R. hoagii GV1, DSM 26608
130480	R. hoagii GV2, DSM 26609
143270	R. hoagii CCUG 18145
143383	R. hoagii CCUG 18812
145182	R. hoagii CCUG 27822, ATCC 33703
145443	R. hoagii CCUG 28565
145469	R. hoagii CCUG 28631
146163	R. hoagii CCUG 30487
146579	R. hoagii CCUG 31490
147113	R. hoagii CCUG 32889
147172	R. hoagii CCUG 32992
149690	R. hoagii CCUG 38197
152324	R. hoagii CCUG 46442
153177	R. hoagii CCUG 48649
153564	R. hoagii CCUG 50191 A
154560	R. hoagii CCUG 54412
161313	R. hoagii JCM 1312, ATCC 10146, IAM 12444, IMSNU 20113, ...
161314	R. hoagii JCM 1313, IAM 12445
161315	R. hoagii JCM 1314, IAM 12446
165418	R. hoagii JCM 6817
165419	R. hoagii JCM 6818
165420	R. hoagii JCM 6819, BCRC 13634
165421	R. hoagii JCM 6820
165429	R. hoagii JCM 6828
165430	R. hoagii JCM 6829
165433	R. hoagii JCM 6832

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		93.5
125438		92.953	positive

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
48968	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.294
125439	obligate aerobe	97.174

Spore formation

@ref	Spore formation	Confidence
125439		95.434

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	cardiolipin biosynthesis	100	7 of 7
66794	threonine metabolism	100	10 of 10
66794	octane oxidation	100	3 of 3
66794	enterobactin biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	hydrogen production	100	5 of 5
66794	propanol degradation	100	7 of 7
66794	resorcinol degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	lipoate biosynthesis	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	glycine betaine biosynthesis	100	5 of 5
66794	cyanate degradation	100	3 of 3
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	NAD metabolism	94.44	17 of 18
66794	flavin biosynthesis	93.33	14 of 15
66794	phenylalanine metabolism	92.31	12 of 13
66794	propionate fermentation	90	9 of 10
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	photosynthesis	85.71	12 of 14
66794	citric acid cycle	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	purine metabolism	84.04	79 of 94
66794	pentose phosphate pathway	81.82	9 of 11
66794	cellulose degradation	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	3-phenylpropionate degradation	80	12 of 15
66794	gallate degradation	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	4-hydroxymandelate degradation	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	phenol degradation	75	15 of 20
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	toluene degradation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	vitamin E metabolism	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	isoleucine metabolism	75	6 of 8
66794	tryptophan metabolism	73.68	28 of 38
66794	alanine metabolism	72.41	21 of 29
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	starch degradation	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	urea cycle	69.23	9 of 13
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	histidine metabolism	68.97	20 of 29
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	oxidative phosphorylation	68.13	62 of 91
66794	IAA biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	allantoin degradation	66.67	6 of 9
66794	cysteine metabolism	66.67	12 of 18
66794	methane metabolism	66.67	2 of 3
66794	non-pathway related	65.79	25 of 38
66794	pyrimidine metabolism	64.44	29 of 45
66794	lysine metabolism	64.29	27 of 42
66794	proline metabolism	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	Entner Doudoroff pathway	60	6 of 10
66794	arachidonate biosynthesis	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	carotenoid biosynthesis	59.09	13 of 22
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	tyrosine metabolism	57.14	8 of 14
66794	degradation of sugar alcohols	56.25	9 of 16
66794	nitrate assimilation	55.56	5 of 9
66794	arginine metabolism	54.17	13 of 24
66794	sulfate reduction	53.85	7 of 13
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	myo-inositol biosynthesis	50	5 of 10
66794	cyclohexanol degradation	50	2 of 4
66794	CMP-KDO biosynthesis	50	2 of 4
66794	sphingosine metabolism	50	3 of 6
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	cholesterol biosynthesis	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	degradation of hexoses	44.44	8 of 18
66794	lipid A biosynthesis	44.44	4 of 9
66794	daunorubicin biosynthesis	44.44	4 of 9
66794	degradation of pentoses	42.86	12 of 28
66794	ascorbate metabolism	40.91	9 of 22
66794	glycine metabolism	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	chlorophyll metabolism	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	mevalonate metabolism	28.57	2 of 7
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Other	#Abscess
#Infection	#Patient	-

Isolation

@ref	Sample type	Host species
48968	Human abscess	Homo sapiens

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM16415v2 assembly for Prescottella equi ATCC 33707	chromosome	GCA_000164155	525370.3	647000305	525370	82.13

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Rhodococcus equi 16S rRNA gene, strain ATCC 33707	X80594	1397		43767

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM16415v2 assembly for Prescottella equi ATCC 33707
BV-BRC: 525370.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	82.66	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.17	no
125439	motility	BacteriaNetⓘ	no	65.18	no
125439	spore_formation	BacteriaNetⓘ	no	95.43	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhodococcus hoagii ATCC 33707 ATCC 33707
NCBI: GCA_000164155.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.95	no
125438	anaerobic	anaerobicⓘ	no	97.26	no
125438	aerobic	aerobicⓘ	yes	92.29	no
125438	spore-forming	spore-formingⓘ	yes	52.55	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genomic analysis of a novel Rhodococcus (Prescottella) equi isolate from a bovine host.	Paterson ML, Ranasinghe D, Blom J, Dover LG, Sutcliffe IC, Lopes B, Sangal V.	Arch Microbiol	10.1007/s00203-019-01695-z	2019
	Comparative Genomic Analysis of Rhodococcus equi: An Insight into Genomic Diversity and Genome Evolution.	Ying J, Ye J, Xu T, Wang Q, Bao Q, Li A.	Int J Genomics	10.1155/2019/8987436	2019
Metabolism	Molecular characterization of a Rhodococcus jostii RHA1 gamma-butyrolactone(-like) signalling molecule and its main biosynthesis gene gblA.	Ceniceros A, Dijkhuizen L, Petrusma M.	Sci Rep	10.1038/s41598-017-17853-6	2017
	Effect of growth temperature on maintenance of virulent Rhodococcus equi.	Takai S, Sugawara T, Watanabe Y, Sasaki Y, Tsubaki S, Sekizaki T.	Vet Microbiol	10.1016/0378-1135(94)90099-x	1994
Genetics	Experimental and Genomic Evaluation of the Oestrogen Degrading Bacterium Rhodococcus equi ATCC13557.	Harthern-Flint SL, Dolfing J, Mrozik W, Meynet P, Eland LE, Sim M, Davenport RJ.	Front Microbiol	10.3389/fmicb.2021.670928	2021
Genetics	Complete genome sequence analysis of Nocardia brasiliensis HUJEG-1 reveals a saprobic lifestyle and the genes needed for human pathogenesis.	Vera-Cabrera L, Ortiz-Lopez R, Elizondo-Gonzalez R, Ocampo-Candiani J.	PLoS One	10.1371/journal.pone.0065425	2013
Metabolism	Gene cluster encoding cholate catabolism in Rhodococcus spp.	Mohn WW, Wilbrink MH, Casabon I, Stewart GR, Liu J, van der Geize R, Eltis LD.	J Bacteriol	10.1128/jb.01169-12	2012
Metabolism	FadD19 of Rhodococcus rhodochrous DSM43269, a steroid-coenzyme A ligase essential for degradation of C-24 branched sterol side chains.	Wilbrink MH, Petrusma M, Dijkhuizen L, van der Geize R.	Appl Environ Microbiol	10.1128/aem.00380-11	2011
Metabolism	The LysR-type transcriptional regulator VirR is required for expression of the virulence gene vapA of Rhodococcus equi ATCC 33701.	Russell DA, Byrne GA, O'Connell EP, Boland CA, Meijer WG.	J Bacteriol	10.1128/jb.186.17.5576-5584.2004	2004
Pathogenicity	Comparative genomic analyses reveal a lack of a substantial signature of host adaptation in Rhodococcus equi ('Prescottella equi').	Sangal V, Jones AL, Goodfellow M, Sutcliffe IC, Hoskisson PA	Pathog Dis	10.1111/2049-632X.12126	2014
Phylogeny	Rhodococcus soli sp. nov., an actinobacterium isolated from soil using a resuscitative technique.	Li SH, Yu XY, Park DJ, Hozzein WN, Kim CJ, Shu WS, Wadaan MA, Ding LX, Li WJ.	Antonie Van Leeuwenhoek	10.1007/s10482-014-0334-x	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#48968	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27823
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhodococcus hoagii (CCUG 27823, ATCC 33707)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000164155

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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