Name: Staphylococcus capitis subsp. capitis LK 499
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14506

Type strain:

Species: Staphylococcus capitis subsp. capitis

Strain Designation: LK 499

Culture col. no.: DSM 20326, ATCC 27840, CCM 2734, CCUG 7326, NCTC 11045, CIP 81.53, JCM 2420, GIFU 9121

Strain history: CIP <- 1981, J. Pillet, Inst. Pasteur, Garches, France <- ATCC <- W.E. Kloos: strain LK 499

NCBI tax ID(s): 29388 (species), 72758 (subspecies)

SI-ID 7695

LMG 13353, ATCC 27840, CCM 2734, DSM 20326, CCUG 7326, NCTC 11045, JCM 2420, CCRC 12161, CIP 81.53, CECT 233, CCUG 6467, NRRL B-14752, BCRC 12161, NCIMB 13732, CECT 7101, VTT E-032415, CNCTC 5672

Special Collections

Other strains from Staphylococcus capitis subsp. capitis

Section

When using BacDive for research please cite our paper

Staphylococcus capitis subsp. capitis LK 499 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from human skin.

coccus-shaped
Gram-positive
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus capitis subsp. capitis**
	Full Scientific Name (LPSN)	Staphylococcus capitis subsp. capitis (Kloos and Schleifer 1975) Bannerman and Kloos 1991

Information on morphological and physiological properties Morphology

[Ref.: #117150]	Gram stain	positive

[Ref.: #117150]	Cell shape	coccus-shaped

[Ref.: #117150]	Motility	no

[Ref.: #8717]	Type of hemolysis	beta
[Ref.: #8717]	Hemolysis ability	1

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8717]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8717]

Culture medium growth

[Ref.: #8717]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8717]

Culture medium composition

expand / minimize

[Ref.: #8717]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8717]

Culture medium growth

[Ref.: #8717]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8717]

Culture medium composition

expand / minimize

[Ref.: #37721]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37721]

Culture medium growth

[Ref.: #37721]

Culture medium composition

expand / minimize

[Ref.: #117150]

Culture medium

CIP Medium 3

[Ref.: #117150]

Culture medium growth

[Ref.: #117150]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #117150]

Culture medium

CIP Medium 72

[Ref.: #117150]

Culture medium growth

[Ref.: #117150]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #8717]			growth	37 °C
[Ref.: #37721]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #117150]	Oxygen tolerance	obligate aerobe
[Ref.: #125439]	Oxygen tolerance	microaerophile Confidence in %93.2

[Ref.: #117150]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %91.3

[Ref.: #8717]	Murein short key	A11.03
[Ref.: #8717]	Murein types	A3alpha L-Lys-Gly₂_-₄-L-Ser₁_-₂-Gly

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	lactose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	maltose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	N-acetylglucosamine ChEBI	-	fermentation	* from API ID32STA
[Ref.: #117150]	nitrate ChEBI	+	reduction
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #117150]	nitrite ChEBI	-	reduction
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	trehalose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	turanose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	-	hydrolysis	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #117150]		indole ChEBI	no
[Ref.: #68375]		acetoin ChEBI	yes	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68375]		acetoin ChEBI	+	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #117150]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API ID32STA
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API ID32STA
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API ID32STA
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API ID32STA
[Ref.: #8717]	catalase	+	1.11.1.6
[Ref.: #117150]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #8717]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #117150]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #117150]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #117150]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #117150]	urease	-	3.5.1.5
[Ref.: #68375]	urease	-	3.5.1.5	* from API ID32STA
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #8717]	6802	-	+	-	-	+	+	+	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	-	-
[Ref.: #8717]	6634	-	+	-	-	+	+	+	-	-	-	+	-	-	-	+	+	-	-	-	-	+	+	-	-	-	-
[Ref.: #8717]	6633	-	+	-	-	+	+	+	-	-	-	+	-	-	-	+	+	-	-	-	-	+	+	-	-	-	-
[Ref.: #8717]	6632	-	-	-	-	+	+	+	-	-	-	+/-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #8717]	6631	-	-	-	-	+	+	+	-	-	-	+/-	-	-	-	+	+	-	-	-	-	+/-	+	-	-	-	-
[Ref.: #8717]	6630	-	+	-	-	+	+	+	-	-	-	+	-	-	-	+	+	-	-	-	+	+	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117150]	13484	-	-	+	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8717]	Sample type/isolated from	human skin

[Ref.: #44977]	Sample type/isolated from	Human skin

[Ref.: #117150]	Sample type/isolated from	Human, Healthy skin
[Ref.: #117150]	Country	United States of America
[Ref.: #117150]	Country ISO 3 Code	USA
[Ref.: #117150]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence L37599 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	284
Soil Samples	44
Animal Samples	8287
Plant Samples	18
Total Samples	8633

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8717]	Pathogenicity (human)	yes, in single cases
[Ref.: #8717]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117150]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8717]	Staphylococcus capitis subsp. capitis gene for 16S rRNA, partial sequence, strain: JCM 2420	AB626127	1473	GenBank ENA	72758 tax ID
[Ref.: #124043]	Staphylococcus capitis ATCC 27840 gene for 16S rRNA, partial sequence.	LC752426	588	GenBank ENA	29388 tax ID	*
[Ref.: #20218]	Staphylococcus capitis partial 16S rRNA gene, type strain ATCC 27840T	FN554713	1288	GenBank ENA	29388 tax ID	*
[Ref.: #20218]	Staphylococcus capitis 16S ribosomal RNA (16S rRNA) gene	L37599	1469	GenBank ENA	29388 tax ID	*
[Ref.: #20218]	S.capitis (capitis) gene for 16S ribosomal RNA	Z26940	771	GenBank ENA	29388 tax ID	*
[Ref.: #20218]	Staphylococcus capitis subsp. capitis strain DSM 20326 16S ribosomal RNA gene, partial sequence	AY688038	464	GenBank ENA	72758 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus capitis subsp. capitis strain DSM 20326	72758.23	complete	PATRIC	72758 tax ID	*
[Ref.: #66792]	Staphylococcus capitis CCM 2734	GCA_014635765	contig	GenBank ENA	29388 tax ID	*
[Ref.: #66792]	Staphylococcus capitis subsp. capitis NCTC 11045	GCA_002902325	scaffold	GenBank ENA	72758 tax ID	*
[Ref.: #66792]	Staphylococcus capitis strain CCM 2734	29388.267	wgs	PATRIC	29388 tax ID	*
[Ref.: #66792]	Staphylococcus capitis strain NCTC11045	29388.172	wgs	PATRIC	29388 tax ID	*
[Ref.: #66792]	Staphylococcus capitis subsp. capitis strain NCTC 11045	72758.11	wgs	PATRIC	72758 tax ID	*

[Ref.: #8717]

GC-content

35.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus capitis subsp. capitis DSM 20326 NCBI: GCA_025272975.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	87.536	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	99.465	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	65.592	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	74.559	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.692	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	79.554	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus capitis subsp. capitis strain DSM 20326 PATRIC: 72758.23
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	91.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	66.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	72.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	93.2

Availability in culture collections External links

[Ref.: #8717]

Culture collection no.

DSM 20326, ATCC 27840, CCM 2734, CCUG 7326, NCTC 11045, CIP 81.53, JCM 2420, GIFU 9121

[Ref.: #83643]

SI-ID 7695

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Immunological recognition of fibronectin-binding proteins of Staphylococcus aureus and Staphylococcus capitis, strain LK 499.	Sakata N, Rozalska B, Wadstrom T	Microbiol Immunol	10.1111/j.1348-0421.1994.tb01791.x	1994	*

References

#8717

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20326

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37721 ; Curators of the CIP;
#44977 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 7326

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68375

Automatically annotated from API ID32STA .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83643

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7695.1 )

#117150 Collection of Institut Pasteur ; Curators of the CIP; CIP 81.53

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Staphylococcus capitis subsp. capitis DSM 20326

Staphylococcus capitis subsp. capitis strain DSM 20326

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