Corynebacterium jeikeium (CCUG 27385, NCTC 11915)

Name: Corynebacterium jeikeium (CCUG 27385, NCTC 11915)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 145008

Type strain

Culture col. no. CCUG 27385 NCTC 11915

NCBI tax ID(s) 38289

Special Collections CCUG

Links

Corynebacterium jeikeium CCUG 27385 is a prokaryote that was isolated from Human axilla,bone marrow transplant cancer patient.

genome sequence

Name and taxonomic classification

SI-ID 114934

NCTC 11915,CCUG 27385

@ref 20215

Last LPSN update 2025-12-16 10:04:44

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium jeikeium

Full scientific name Corynebacterium jeikeium Jackman et al. 1988

BacDive ID	Other strains from **Corynebacterium jeikeium** (50)	Type strain
3142	C. jeikeium D1076, DSM 7171, ATCC 43734, CIP 103337, ... (type strain)
3140	C. jeikeium D760, DSM 7112, ATCC 43216
3141	C. jeikeium C8676, DSM 7113, ATCC 43217
134941	C. jeikeium 24-87, CIP 102772
134968	C. jeikeium 56.87, CIP 102801
135022	C. jeikeium 163-87, CIP 102898
135163	C. jeikeium 2.87, CIP 102749
135979	C. jeikeium CIP 101973
136032	C. jeikeium CIP 102029
136052	C. jeikeium 118-86, CIP 102172
136121	C. jeikeium 642.86, CIP 102659
136152	C. jeikeium CIP 102927
137627	C. jeikeium 347-86, CIP 102360
137838	C. jeikeium CIP 52.15
137912	C. jeikeium 116-86, CIP 102170
137913	C. jeikeium 104-86, CIP 102171
137920	C. jeikeium 143-86, CIP 102189
137958	C. jeikeium 281-86, CIP 102312
137960	C. jeikeium 275-86, CIP 102315
138083	C. jeikeium CIP 100151
138709	C. jeikeium 272-86, 47289, CIP 102296
138747	C. jeikeium 751.86, CIP 102732
138765	C. jeikeium 183-87, CIP 102926
138806	C. jeikeium F2704, CIP 82.51
142143	C. jeikeium CCUG 11018 A
142311	C. jeikeium CCUG 11623 A
142413	C. jeikeium CCUG 12418
142724	C. jeikeium CCUG 14246
143091	C. jeikeium CCUG 17152
143633	C. jeikeium CCUG 20665
143664	C. jeikeium CCUG 20880
144911	C. jeikeium CCUG 27047
145872	C. jeikeium CCUG 29865
146036	C. jeikeium CCUG 30236
146470	C. jeikeium CCUG 31240 A
146588	C. jeikeium CCUG 31528
146689	C. jeikeium CCUG 31953
146962	C. jeikeium CCUG 32550
147186	C. jeikeium CCUG 33019
147204	C. jeikeium CCUG 33046
147739	C. jeikeium CCUG 34122
147783	C. jeikeium CCUG 34219
147784	C. jeikeium CCUG 34220
147785	C. jeikeium CCUG 34221
147817	C. jeikeium CCUG 34281
149196	C. jeikeium CCUG 37251
150662	C. jeikeium CCUG 41893
151102	C. jeikeium CCUG 43278
156319	C. jeikeium CCUG 61137
173088	C. jeikeium CIMB 05-9342, CRBIP17.58

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	93
125438	92.684	positive
125439	92.1

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	94.6

Spore formation

@ref	Spore formation	Confidence
125439		91.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	catalase	+	1.11.1.6	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

48762

Fatty acid	Percentage	ECL
C18:2 ω6,9c/C18:0 ANTE	39.7	17.724
C16:0	28.6	16
C18:1 ω9c	17.3	17.769
C17:0 anteiso	7.7	16.722
C18:0	4.9	18
C14:0	1.9	14

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
48762	-	+	-	+	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
48762	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Limb	#Arm
#Infection	#Patient	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
48762	Human axilla,bone marrow transplant cancer patient	United Kingdom	GBR	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM660v1 assembly for Corynebacterium jeikeium K411 K411 = NCTC 11915	complete	GCA_000006605	306537.10	637000085	306537	98.16

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium jeikeium K411 K411 = NCTC 11915
NCBI: GCA_000006605

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.50	no
125439	motility	BacteriaNetⓘ	no	92.10	no
125439	gram_stain	BacteriaNetⓘ	positive	88.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	94.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium jeikeium K411 K411 = NCTC 11915
NCBI: GCA_000006605.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.68	no
125438	anaerobic	anaerobicⓘ	no	95.54	no
125438	aerobic	aerobicⓘ	yes	66.50	no
125438	spore-forming	spore-formingⓘ	no	80.93	no
125438	thermophilic	thermophileⓘ	no	94.75	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Transcriptional control of lipid metabolism by the MarR-like regulator FamR and the global regulator GlxR in the lipophilic axilla isolate Corynebacterium jeikeium K411.	Barzantny H, Guttmann S, Lassig C, Brune I, Tauch A.	Microb Biotechnol	10.1111/1751-7915.12004	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#48762	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27385
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium jeikeium (CCUG 27385, NCTC 11915)

Name and taxonomic classification