Name: Parageobacillus toebii R-35642
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1449

Type strain:

Species: Parageobacillus toebii

Strain Designation: R-35642, SK-1

Culture col. no.: DSM 14590, KCTC 0306BP, LMG 23037, CIP 108270

Strain history: CIP <- 2004, KRIBB: strain SK-1

NCBI tax ID(s): 1223503 (strain), 153151 (species)

SI-ID 100656

DSM 14590, LMG 23037, BCRC 17268, CCRC 17268, CIP 108270

Other strains from Parageobacillus toebii

P. toebii E134, DSM 22627

Section

Parageobacillus toebii R-35642 is an aerobe, spore-forming, thermophilic bacterium that was isolated from hay compost in farmyard.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Parageobacillus*
	Species	**Parageobacillus toebii**
	Full Scientific Name (LPSN)	Parageobacillus toebii (Sung et al. 2002) Aliyu et al. 2019

	Synonym	"Parageobacillus* toebii"*
	Synonym	Geobacillus toebii

Information on morphological and physiological properties Morphology

[Ref.: #23037]	Gram stain	positive
[Ref.: #123555]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23037]	Cell length	2.0-3.5 µm

[Ref.: #23037]	Cell width	0.5-0.9 µm

[Ref.: #23037]	Cell shape	rod-shaped
[Ref.: #123555]	Cell shape	rod-shaped

[Ref.: #23037]	Motility	yes
[Ref.: #123555]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %91.71

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5397]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #5397]

Culture medium growth

[Ref.: #5397]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5397]

Culture medium composition

expand / minimize

[Ref.: #33935]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33935]

Culture medium growth

[Ref.: #33935]

Culture medium composition

expand / minimize

[Ref.: #123555]

Culture medium

CIP Medium 72

[Ref.: #123555]

Culture medium growth

[Ref.: #123555]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5397]		growth	55 °C
[Ref.: #23037]		growth	45.0-70.0 °C
[Ref.: #23037]	no	growth	80.0 °C
[Ref.: #23037]		optimum	60.0 °C
[Ref.: #33935]		growth	55 °C
[Ref.: #123555]		growth	37-55 °C
[Ref.: #123555]	no	growth	10 °C
[Ref.: #123555]	no	growth	22 °C
[Ref.: #123555]	no	growth	30 °C

[Ref.: #5397]	Temperature range	thermophilic
[Ref.: #23037]	Temperature range	thermophilic
[Ref.: #23037]	Temperature range	hyperthermophilic
[Ref.: #23037]	Temperature range	thermophilic
[Ref.: #33935]	Temperature range	thermophilic
[Ref.: #123555]	Temperature range	psychrophilic
[Ref.: #123555]	Temperature range	mesophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.287

	Kind of pH		pH
[Ref.: #23037]		optimum	7.5
[Ref.: #23037]		growth	6.0-9.0
[Ref.: #23037]	no	growth	<6.0
[Ref.: #23037]	no	growth	>9.0
[Ref.: #123555]		growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23037]	Oxygen tolerance	aerobe
[Ref.: #123555]	Oxygen tolerance	facultative anaerobe

[Ref.: #23037]	Spore description	ellipsoidal,subterminal to terminal,in swollen sporangia
[Ref.: #23037]	Type of spore	spore
[Ref.: #23037]	Ability of spore formation	yes
[Ref.: #123555]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.448

	Salt	Tested relation		Salt conc.
[Ref.: #23037]	NaCl	no	growth	5.0	%
[Ref.: #23037]	NaCl		growth	0.0-5.0	%(w/v)
[Ref.: #123555]	NaCl		growth	0-2	%
[Ref.: #123555]	NaCl	no	growth	4	%
[Ref.: #123555]	NaCl	no	growth	6	%
[Ref.: #123555]	NaCl	no	growth	8	%
[Ref.: #123555]	NaCl	no	growth	10	%

[Ref.: #23037]	Murein short key	A31
[Ref.: #23037]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	casein	+	hydrolysis
[Ref.: #23037]	cellobiose ChEBI	-	builds acid from
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123555]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23037]	D-glucose ChEBI	+	builds acid from
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	esculin ChEBI	-	hydrolysis
[Ref.: #123555]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	galactose ChEBI	-	builds acid from
[Ref.: #23037]	gelatin ChEBI	-	hydrolysis
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	glucose ChEBI	-	fermentation
[Ref.: #23037]	glycerol ChEBI	-	builds acid from
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123555]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	lactose ChEBI	-	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23037]	mannitol ChEBI	-	builds acid from
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	myo-inositol ChEBI	+	builds acid from
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123555]	nitrate ChEBI	+	reduction
[Ref.: #123555]	nitrate ChEBI	+	respiration
[Ref.: #123555]	nitrite ChEBI	+	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	rhamnose ChEBI	-	builds acid from
[Ref.: #23037]	ribitol ChEBI	-	builds acid from
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	ribose ChEBI	-	builds acid from
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	sorbitol ChEBI	-	builds acid from
[Ref.: #23037]	starch ChEBI	-	hydrolysis
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23037]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #23037]		acetoin ChEBI	yes
[Ref.: #123555]		indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #23037]	acetoin ChEBI	+
[Ref.: #123555]	acetoin ChEBI	-
[Ref.: #23037]	glucose ChEBI		-
[Ref.: #123555]	glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123555]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123555]	amylase	-
[Ref.: #123555]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123555]	caseinase	-	3.4.21.50
[Ref.: #23037]	catalase	+	1.11.1.6
[Ref.: #123555]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123555]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123555]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #123555]	gelatinase	-
[Ref.: #123555]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #123555]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123555]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #123555]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123555]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123555]	tween esterase	-
[Ref.: #123555]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123555]	11245	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	+/-	+	+	-	+/-	+/-	+/-	-	-	-	+/-	-	-	-	-	-	-	+/-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123555]	2682	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	-	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	+	+	+	+	+	-	-	+	+	+	+	+	+	-	+	-	+	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123555]	11043	-	+	+	+	-	-	-	-	-	-	+	-	+	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5397]	Sample type/isolated from	hay compost in farmyard
[Ref.: #5397]	Geographic location (country and/or sea, region)	Korea, Kongju
[Ref.: #5397]	Country	Republic of Korea
[Ref.: #5397]	Country ISO 3 Code	KOR
[Ref.: #5397]	Continent	Asia

[Ref.: #23037]	Sample type/isolated from	farmland compost
[Ref.: #23037]	Enrichment culture	solid modified basal medium (MBM)
[Ref.: #23037]	Enrichment culture composition	containing 5 g polypeptone, 1 g yeast extract, 6 g K2HPO4, 2 g KH2PO4, 0 .5 g MgSO4.7H2 and 0.5 g L-tyrosine l- 1 deionized water
[Ref.: #23037]	Enrichment culture duration	3 days
[Ref.: #23037]	Enrichment culture temperature	60.0 ̊C

[Ref.: #123555]	Sample type/isolated from	Environment, Hay compost sample taken from a farm-yard in Kongju
[Ref.: #123555]	Geographic location (country and/or sea, region)	Kongju
[Ref.: #123555]	Country	Republic of Korea
[Ref.: #123555]	Country ISO 3 Code	KOR
[Ref.: #123555]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Engineered	#Biodegradation	#Composting
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF326278 (>99% sequence identity) for Bacillaceae from Microbeatlas

Aquatic Samples	68
Soil Samples	124
Animal Samples	558
Plant Samples	30
Total Samples	780

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5397]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123555]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5397]	Geobacillus toebii partial 16S rRNA gene, strain R-35642	FN428690	1504	ENA	1223503 tax ID
[Ref.: #5397]	Geobacillus toebii 16S ribosomal RNA gene, complete sequence	AF326278	1511	ENA	153151 tax ID
[Ref.: #20218]	Geobacillus toebii strain DSM 14590 16S-23S ribosomal RNA intergenic spacer and tRNA-Ile gene, partial sequence; tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU157956	400	ENA	1223503 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Parageobacillus toebii NBRC 107807 DSM 14590	GCA_003688615	complete	GenBank	1223503 tax ID	*
[Ref.: #66792]	Parageobacillus toebii NBRC 107807 DSM 14590	GCA_014196095	scaffold	GenBank	1223503 tax ID	*
[Ref.: #66792]	Parageobacillus toebii NBRC 107807 strain DSM 14590	1223503.6	wgs	PATRIC	1223503 tax ID	*
[Ref.: #66792]	Parageobacillus toebii NBRC 107807 strain DSM 14590	1223503.9	wgs	PATRIC	1223503 tax ID	*
[Ref.: #66792]	Parageobacillus toebii DSM 14590	2773858069	draft	JGI IMG/M	1223503 tax ID	*
[Ref.: #66792]	Parageobacillus toebii DSM 14590	2829804122	draft	JGI IMG/M	1223503 tax ID	*

[Ref.: #5397]

GC-content

43.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Parageobacillus toebii NBRC 107807 DSM 14590 NCBI: GCA_003688615.2
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Parageobacillus toebii NBRC 107807 DSM 14590 NCBI: GCA_003688615.1
[Ref.: #69480]	motile	yes	90.162	no
[Ref.: #69480]	flagellated	yes	84.705	no
[Ref.: #69480]	gram-positive	yes	92.474	yes
[Ref.: #69480]	anaerobic	no	97.593	yes
[Ref.: #69480]	aerobic	yes	89.584	yes
[Ref.: #69480]	halophile	no	88.775	no
[Ref.: #69480]	spore-forming	yes	96.029	no
[Ref.: #69480]	glucose-util	yes	90.181	no
[Ref.: #69480]	thermophile	yes	99.634	yes
[Ref.: #69480]	glucose-ferment	no	91.822	yes
[Ref.: #69480]	motile	yes	90.162	no
[Ref.: #69480]	flagellated	yes	84.705	no
[Ref.: #69480]	gram-positive	yes	92.474	yes
[Ref.: #69480]	anaerobic	no	97.593	yes
[Ref.: #69480]	aerobic	yes	89.584	yes
[Ref.: #69480]	halophile	no	88.775	no
[Ref.: #69480]	spore-forming	yes	96.029	no
[Ref.: #69480]	glucose-util	yes	90.181	no
[Ref.: #69480]	thermophile	yes	99.634	yes
[Ref.: #69480]	glucose-ferment	no	91.822	yes

Availability in culture collections External links

[Ref.: #5397]

Culture collection no.

DSM 14590, KCTC 0306BP, LMG 23037, CIP 108270

[Ref.: #71099]

SI-ID 100656

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Methylome and Complete Genome Sequence of Parageobacillus toebii DSM 14590(T), a Thermophilic Bacterium.	Hatmaker EA, O'Dell KB, Riley LA, Payne IC, Guss AM	Microbiol Resour Announc	10.1128/MRA.00589-20	2020	*
Phylogeny	Geobacillus toebii sp. nov., a novel thermophilic bacterium isolated from hay compost.	Sung MH, Kim H, Bae JW, Rhee SK, Jeon CO, Kim K, Kim JJ, Hong SP, Lee SG, Yoon JH, Park YH, Baek DH	Int J Syst Evol Microbiol	10.1099/00207713-52-6-2251	2002	*

References

#5397

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14590

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23037

M. H. Sung,H. Kim,J. W. Bae,S. K. Rhee,C. O. Jeon,K. Kim,J. J. Kim,S. P. Hong,S. G. Lee,J. H. Yoon,Y. H. Park,D. H. Baek: Geobacillus toebii sp. nov., a novel thermophilic bacterium isolated from hay compost.. IJSEM 52: 2251 - 2255 2002 ( DOI 10.1099/00207713-52-6-2251 , PubMed 12508894 )

#33935 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71099

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100656.1 )

#123555 Collection of Institut Pasteur ; Curators of the CIP; CIP 108270
* These data were automatically processed and therefore are not curated

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Parageobacillus toebii NBRC 107807 DSM 14590

Parageobacillus toebii NBRC 107807 DSM 14590

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