Name: Salinicoccus albus YIM-Y21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14437

Type strain:

Species: Salinicoccus albus

Strain Designation: YIM-Y21

Culture col. no.: DSM 19776, CCTCC AA 207024, KCTC 13192

Strain history: <- X Cui, Yunnan Inst., China

NCBI tax ID(s): 1123230 (strain), 418756 (species)

SI-ID 400352

DSM 19776

Section

Salinicoccus albus YIM-Y21 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from brine sample of a salt mine.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Salinicoccus*
	Species	**Salinicoccus albus**
	Full Scientific Name (LPSN)	Salinicoccus albus Chen et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #28987]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #28987]	Cell shape	coccus-shaped
[Ref.: #67771]	Cell shape	coccus-shaped

[Ref.: #28987]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.206

[Ref.: #28987]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8311]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8311]

Culture medium growth

[Ref.: #8311]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8311]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8311]	growth	28 °C
[Ref.: #28987]	growth	05-40 °C
[Ref.: #28987]	optimum	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #8311]	Temperature range	mesophilic
[Ref.: #28987]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #28987]			optimum	8.5
[Ref.: #28987]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28987]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #28987]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.891

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28987]		NaCl		growth	01-30	%
[Ref.: #28987]		NaCl		optimum	10	%

[Ref.: #28987]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28987]	arabinose ChEBI	+	carbon source
[Ref.: #28987]	cellobiose ChEBI	+	carbon source
[Ref.: #28987]	fructose ChEBI	+	carbon source
[Ref.: #28987]	glucose ChEBI	+	carbon source
[Ref.: #28987]	glycerol ChEBI	+	carbon source
[Ref.: #28987]	glycine ChEBI	+	carbon source
[Ref.: #28987]	L-arabitol ChEBI	+	carbon source
[Ref.: #28987]	mannitol ChEBI	+	carbon source
[Ref.: #28987]	mannose ChEBI	+	carbon source
[Ref.: #28987]	nitrate ChEBI	+	reduction
[Ref.: #28987]	propionate ChEBI	+	carbon source
[Ref.: #28987]	raffinose ChEBI	+	carbon source
[Ref.: #28987]	rhamnose ChEBI	+	carbon source
[Ref.: #28987]	ribose ChEBI	+	carbon source
[Ref.: #28987]	sorbitol ChEBI	+	carbon source
[Ref.: #28987]	sucrose ChEBI	+	carbon source
[Ref.: #28987]	trehalose ChEBI	+	carbon source
[Ref.: #28987]	tween 40 ChEBI	+	carbon source
[Ref.: #28987]	tween 80 ChEBI	+	carbon source
[Ref.: #28987]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #28987]	acid phosphatase	+	3.1.3.2
[Ref.: #28987]	catalase	+	1.11.1.6
[Ref.: #28987]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8311]	Sample type/isolated from	brine sample of a salt mine
[Ref.: #8311]	Geographic location (country and/or sea, region)	Yipinglang
[Ref.: #8311]	Country	China
[Ref.: #8311]	Country ISO 3 Code	CHN
[Ref.: #8311]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From brine, Yipinglang salt mine
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Aquatic	-
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF177692 (>99% sequence identity) for Salinicoccus albus subclade from Microbeatlas

Aquatic Samples	85
Soil Samples	91
Animal Samples	788
Plant Samples	77
Total Samples	1041

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8311]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8311]	Salinicoccus albus strain YIM-Y21 16S ribosomal RNA gene, partial sequence	EF177692	1478	ENA	1123230 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salinicoccus albus DSM 19776 YIM-Y21	GCA_000385175	contig	GenBank	1123230 tax ID	*
[Ref.: #66792]	Salinicoccus albus DSM 19776	1123230.3	wgs	PATRIC	1123230 tax ID	*
[Ref.: #66792]	Salinicoccus albus DSM 19776	2519899640	draft	JGI IMG/M	1123230 tax ID	*

[Ref.: #8311]

GC-content

46.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinicoccus albus DSM 19776 PATRIC: 1123230.3
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicoccus albus DSM 19776 PATRIC: 1123230.3
[Ref.: #69480]	motile	no	90.786	no
[Ref.: #69480]	flagellated	no	94.381	yes
[Ref.: #69480]	gram-positive	yes	92.072	yes
[Ref.: #69480]	anaerobic	no	99.508	yes
[Ref.: #69480]	aerobic	yes	97.035	yes
[Ref.: #69480]	halophile	yes	97.917	yes
[Ref.: #69480]	spore-forming	no	89.913	yes
[Ref.: #69480]	thermophile	no	99.438	yes
[Ref.: #69480]	glucose-util	yes	85.727	no
[Ref.: #69480]	glucose-ferment	no	59.531	no

Availability in culture collections External links

[Ref.: #8311]

Culture collection no.

DSM 19776, CCTCC AA 207024, KCTC 13192

[Ref.: #83581]

SI-ID 400352

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicoccus albus sp. nov., a halophilic bacterium from a salt mine.	Chen YG, Cui XL, Wang YX, Zhang YQ, Li QY, Liu ZX, Wen ML, Peng Q, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.003251-0	2009	*

References

#8311

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19776

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28987

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25420 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83581

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400352.1 )

#25420

IJSEM 874 2009 ( DOI 10.1099/ijs.0.003251-0 , PubMed 19329623 )

* These data were automatically processed and therefore are not curated

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Salinicoccus albus DSM 19776

Salinicoccus albus DSM 19776

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