Name: Salinicoccus roseus 9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14427

Type strain:

Species: Salinicoccus roseus

Strain Designation: 9

Culture col. no.: CCUG 43291, DSM 5351, ATCC 49258, CCM 3516, JCM 14630, CIP 104761, NCIMB 12835

Strain history: CCM 3516 <-- A. Ventosa no. 9.

NCBI tax ID(s): 45670 (species)

Other strains from Salinicoccus roseus

S. roseus CCUG 43289, CCM 168
S. roseus CCUG 43290, CCM 1405

Section

Salinicoccus roseus 9 is an aerobe, mesophilic bacterium that was isolated from solar saltern.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Salinicoccus*
	Species	**Salinicoccus roseus**
	Full Scientific Name (LPSN)	Salinicoccus roseus Ventosa et al. 1990

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1998]

Culture medium

MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)

[Ref.: #1998]

Culture medium growth

[Ref.: #1998]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1998]

Culture medium composition

expand / minimize

[Ref.: #1998]

Culture medium

10% MH MEDIUM (DSMZ Medium 593)

[Ref.: #1998]

Culture medium growth

[Ref.: #1998]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1998]

Culture medium composition

expand / minimize

[Ref.: #39092]

Culture medium

MEDIUM 167 - for Cytophaga uliginosa, Demetria terragena and Marinococcus al bus

[Ref.: #39092]

Culture medium growth

[Ref.: #39092]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #1998]	growth	37 °C
[Ref.: #39092]	growth	37 °C
[Ref.: #55771]	growth	35 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #1998]	Temperature range	mesophilic
[Ref.: #39092]	Temperature range	mesophilic
[Ref.: #55771]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #55771]			growth	7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #55771]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #55771]		NaCl		growth	8	%

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #55771]

Fatty acid	Percentage	ECL
C15:0 ANTEISO	33.4	14.711
C15:0 ISO	11.5	14.621
C17:0 anteiso	11.5	16.722
C17:1 ω10c ISO	9.7	16.387
C17:0 iso	5.2	16.629
C19:0 ISO	4.5	18.633
C19:0 ANTEISO	4.4	18.729
C17:1 ISO I/C16:0 DMA	3.7	16.481
C16:1 ω7c alcohol	3.5	15.386
C16:0 iso	3.2	15.626
Unidentified	3.1	16.305
Unidentified	1.8	14.308
Unidentified	1.3	15.308
C14:0 ISO	1.2	13.618
C18:2 ω6,9c/C18:0 ANTE	1	17.724
C15:1 ISO AT 5	1	14.387

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	peptidoglycan biosynthesis	100	15 of 15
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	pyrimidine metabolism	84.44	38 of 45
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	purine metabolism	78.72	74 of 94
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	4-hydroxyphenylacetate degradation	70	7 of 10
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	oxidative phosphorylation	62.64	57 of 91
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	alanine metabolism	58.62	17 of 29
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	phenol degradation	55	11 of 20
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	degradation of sugar acids	48	12 of 25
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	lysine metabolism	45.24	19 of 42
[Ref.: #66794]	CO2 fixation in Crenarchaeota	44.44	4 of 9
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	lipid metabolism	38.71	12 of 31
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	cholesterol biosynthesis	36.36	4 of 11
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	vitamin B12 metabolism	20.59	7 of 34
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1998]	Sample type/isolated from	solar saltern
[Ref.: #1998]	Country	Spain
[Ref.: #1998]	Country ISO 3 Code	ESP
[Ref.: #1998]	Continent	Europe

[Ref.: #55771]	Sample type/isolated from	Solar saltern
[Ref.: #55771]	Country	Spain
[Ref.: #55771]	Country ISO 3 Code	ESP
[Ref.: #55771]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Solar saltern in Alicante
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1998]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	S.roseus 16S rRNA gene	X94559	1543	ENA	45670 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salinicoccus roseus DSM 5351	GCA_003814515	scaffold	GenBank	45670 tax ID
[Ref.: #66792]	Salinicoccus roseus CCM 3516	GCA_014634945	scaffold	GenBank	45670 tax ID	*
[Ref.: #66792]	Salinicoccus roseus strain CCM 3516	45670.10	wgs	PATRIC	45670 tax ID	*
[Ref.: #66792]	Salinicoccus roseus strain DSM 5351	45670.8	wgs	PATRIC	45670 tax ID	*
[Ref.: #66792]	Salinicoccus roseus DSM 5351	2786546135	draft	JGI IMG/M	45670 tax ID	*

[Ref.: #67770]

GC-content

51.2 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #1998]

Culture collection no.

CCUG 43291, DSM 5351, ATCC 49258, CCM 3516, JCM 14630, CIP 104761, NCIMB 12835

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicoccus sesuvii sp. nov., isolated from the rhizosphere of Sesuvium portulacastrum.	Kampfer P, Arun AB, Busse HJ, Young CC, Lai WA, Rekha PD, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.027524-0	2010	*
Phylogeny	Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China.	Chen YG, Cui XL, Pukall R, Li HM, Yang YL, Xu LH, Wen ML, Peng Q, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.64783-0	2007	*
Phylogeny	Salinicoccus siamensis sp. nov., isolated from fermented shrimp paste in Thailand.	Pakdeeto A, Tanasupawat S, Thawai C, Moonmangmee S, Kudo T, Itoh T	Int J Syst Evol Microbiol	10.1099/ijs.0.64876-0	2007	*
Phylogeny	Salinicoccus luteus sp. nov., isolated from a desert soil.	Zhang YQ, Yu LY, Liu HY, Zhang YQ, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64967-0	2007	*
Phylogeny	Salinicoccus jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.	Aslam Z, Lim JH, Im WT, Yasir M, Chung YR, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64586-0	2007	*

References

#1998

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5351

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39092 ; Curators of the CIP;
#55771 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43291

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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