Name: Macrococcus caseolyticus subsp. caseolyticus LRA 041 575
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14418

Type strain:

Species: Macrococcus caseolyticus subsp. caseolyticus

Strain Designation: LRA 041 575

Culture col. no.: DSM 6669, ATCC 35662, CCUG 35411, CIP 103689

Strain history: CIP <- 1993, R. Mercier, bioMérieux, La Balme les Grottes, France: strain LRA 004 15 75, Staphylococcus cohnii cohnii <- 1975, C. Delarast, Brest, France

NCBI tax ID(s): 2233644 (subspecies)

SI-ID 41214

ATCC 35662, CCUG 35411, CIP 103689, DSM 6669, BCRC 15224, CCRC 15224

Other strains from Macrococcus caseolyticus subsp. caseolyticus

M. caseolyticus subsp. caseolyticus 235, CCUG 15606, DSM 20597, ATCC ... (type strain)

Section

Macrococcus caseolyticus subsp. caseolyticus LRA 041 575 is an aerobe, spore-forming, mesophilic animal pathogen of the family Staphylococcaceae.

Gram-positive
spore-forming
aerobe
animal pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Macrococcus*
	Species	**Macrococcus caseolyticus subsp. caseolyticus**
	Full Scientific Name (LPSN)	Macrococcus caseolyticus subsp. caseolyticus (Schleifer et al. 1982 ex Evans 1916) Mašla?ová et al. 2018

Synonym

"Macrococcoides caseolyticus subsp. caseolyticus"

Information on morphological and physiological properties Morphology

[Ref.: #117203]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #117203]	Cell shape	coccus-shaped

[Ref.: #117203]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2654]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #2654]

Culture medium growth

[Ref.: #2654]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2654]

Culture medium composition

expand / minimize

[Ref.: #37156]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37156]

Culture medium growth

[Ref.: #37156]

Culture medium composition

expand / minimize

[Ref.: #117203]

Culture medium

CIP Medium 72

[Ref.: #117203]

Culture medium growth

[Ref.: #117203]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #117203]

Culture medium

CIP Medium 3

[Ref.: #117203]

Culture medium growth

[Ref.: #117203]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2654]	growth	37 °C
[Ref.: #37156]	growth	37 °C
[Ref.: #52714]	growth	37 °C

[Ref.: #2654]	Temperature range	mesophilic
[Ref.: #37156]	Temperature range	mesophilic
[Ref.: #52714]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #52714]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.834

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	arginine ChEBI	-	hydrolysis	* from API ID32STA, API STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68378]	D-fructose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68378]	D-glucose ChEBI	-	builds acid from	* from API STA
[Ref.: #68378]	D-mannitol ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	D-mannitol ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68378]	D-mannose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	D-mannose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68378]	D-xylose ChEBI	-	builds acid from	* from API STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68378]	lactose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	lactose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	maltose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68378]	maltose ChEBI	-	builds acid from	* from API STA
[Ref.: #68378]	melibiose ChEBI	-	builds acid from	* from API STA
[Ref.: #68378]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API STA
[Ref.: #68378]	N-acetylglucosamine ChEBI	-	builds acid from	* from API STA
[Ref.: #68375]	N-acetylglucosamine ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68378]	nitrate ChEBI	-	reduction	* from API STA
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68378]	raffinose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68378]	sucrose ChEBI	-	builds acid from	* from API STA
[Ref.: #68375]	sucrose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	trehalose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68378]	trehalose ChEBI	-	builds acid from	* from API STA
[Ref.: #68375]	turanose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	-	hydrolysis	* from API ID32STA, API STA
[Ref.: #68378]	xylitol ChEBI	-	builds acid from	* from API STA
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68378]		lysostaphin	yes			* from API STA
[Ref.: #68375]		novobiocin ChEBI	yes	1.8	µg	* from API ID32STA

	Metabolite production	Metabolite	Production
[Ref.: #68378]		acetoin ChEBI	yes	* from API STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68378]		acetoin ChEBI	+	* from API STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68378]	alkaline phosphatase	-	3.1.3.1	* from API STA
[Ref.: #68378]	arginine dihydrolase	-	3.5.3.6	* from API STA, API ID32STA
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	-	3.2.1.31	* from API ID32STA
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #68378]	urease	-	3.5.1.5	* from API STA, API ID32STA

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #2654]	6150	-	-	-	-	+	+	-	+	-	+	-	-	+	-	+	+	-	-	+	+	-	-	-	-	-	-
[Ref.: #52714]	2059	-	-	-	-	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from maltoseMAL	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from D-mannitolMAN	Acid from xylitolXLT	Acid from melibioseMEL	Reduction of nitrateNIT	Alkaline phosphatasePAL	Acetoin production (Voges Proskauer test)VP	Acid from raffinoseRAF	Acid from D-xyloseXYL	Acid from sucroseSAC	Acid from methyl-alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Arginine dihydrolaseADH	Urease/urea hydrolysisURE	Resistance to lysostaphin (EC 3.4.24.75)LSTR
[Ref.: #52714]	46	not determinedn.d.	-	+	+	-	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #37156]	Geographic location (country and/or sea, region)	Brest
[Ref.: #37156]	Country	France
[Ref.: #37156]	Country ISO 3 Code	FRA
[Ref.: #37156]	Continent	Europe

[Ref.: #117203]	Geographic location (country and/or sea, region)	Brest
[Ref.: #117203]	Country	France
[Ref.: #117203]	Country ISO 3 Code	FRA
[Ref.: #117203]	Continent	Europe
[Ref.: #117203]	Isolation date	1975
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2654]	Pathogenicity (animal)	yes, in single cases
[Ref.: #2654]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117203]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Macrococcus caseolyticus strain FDAARGOS_1005	69966.79	complete	PATRIC	69966 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Macrococcus caseolyticus strain FDAARGOS_1005 strain Not applicable PATRIC: 69966.79
[Ref.: #69481]	spore-forming	yes	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Macrococcus caseolyticus strain FDAARGOS_1005 strain Not applicable PATRIC: 69966.79
[Ref.: #69480]	gram-positive	yes	93.654	no
[Ref.: #69480]	anaerobic	no	98.29	yes
[Ref.: #69480]	halophile	yes	85.166	no
[Ref.: #69480]	spore-forming	no	80.55	no
[Ref.: #69480]	glucose-util	yes	87.343	no
[Ref.: #69480]	thermophile	no	99.757	yes
[Ref.: #69480]	flagellated	no	89.482	no
[Ref.: #69480]	motile	no	86.795	no
[Ref.: #69480]	aerobic	yes	87.406	yes
[Ref.: #69480]	glucose-ferment	no	67.902	no

Availability in culture collections External links

[Ref.: #2654]

Culture collection no.

DSM 6669, ATCC 35662, CCUG 35411, CIP 103689

[Ref.: #83562]

SI-ID 41214

References

#2654

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6669

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37156 ; Curators of the CIP;
#52714 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35411

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68375

Automatically annotated from API ID32STA .

#68378

Automatically annotated from API STA .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83562

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41214.1 )

#117203 Collection of Institut Pasteur ; Curators of the CIP; CIP 103689
* These data were automatically processed and therefore are not curated

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Macrococcus caseolyticus strain FDAARGOS_1005 strain Not applicable

Macrococcus caseolyticus strain FDAARGOS_1005 strain Not applicable

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