Jeotgalicoccus coquinae (DSM 22419, CCM 7682, CCUG 57956)

Name: Jeotgalicoccus coquinae (DSM 22419, CCM 7682, CCUG 57956)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14416

Type strain

Strain Designation MK-7, MK7

Culture col. no. DSM 22419 CCM 7682 CCUG 57956 MK-7 MK7 1 more

NCBI tax ID(s) 709509

Special Collections DSMZ CCUG Literature strains CIP

History <- P. Kämpfer, Univ. Giessen, Germany; MK7 CIP <- 2019, DSMZ <- P. Kämpfer, Giessen Univ., Giessen, Germany: strain MK7

Links

Jeotgalicoccus coquinae MK-7 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from coquina, a food supplement used in a duck fattening farm.

Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397647

CIP 111751,DSM 22419,CCUG 57956

@ref 20215

Last LPSN update 2026-02-09 11:21:24

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Jeotgalicoccus

Species Jeotgalicoccus coquinae

Full scientific name Jeotgalicoccus coquinae Martin et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29813	positive	1.75 µm	1.75 µm	coccus-shaped
118746	positive			coccus-shaped
125438	positive				90.848

Colony morphology

61539

Incubation period1 day

Pigmentation

29813

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16325	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
118746	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16325	positive	growth	28
29813	positive	growth	26-42
61539	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29813	aerobe
61539	aerobe
125439	obligate aerobe	98.2

Spore formation

29813

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29813	NaCl	positive	growth	0-14 %

Observation

29813

Observationaggregates in clumps

Enzymes

@ref	Value	Activity	Ec
29813	catalase	+	1.11.1.6
29813	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Livestock (Husbandry)
#Engineered	#Food production	#Food
#Environmental	#Terrestrial	#Sediment
#Host	#Birds	-

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
16325	coquina, a food supplement used in a duck fattening farm		Germany	DEU	Europe
61539	Coquina	2009	Germany	DEU	Europe
118746	Food, Coquina		Germany	DEU	Europe	2009-03-01

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16325	1	Risk group (German classification) According to TRBA 466
118746	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420742v1 assembly for Jeotgalicoccus coquinae DSM 22419	scaffold	GCA_014207425	709509.3	2861262658	709509	70.56
66792	ASM1463522v1 assembly for Jeotgalicoccus coquinae CCM 7682	contig	GCA_014635225	709509.4	8065629186	709509	67.69
124043	CIP111751 assembly for Jeotgalicoccus coquinae CIP 111751	scaffold	GCA_903994065	709509.5	8065631514	709509	58.83

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16325	Jeotgalicoccus coquinae strain MK-7 16S ribosomal RNA gene, partial sequence	GU295938	1325		709509

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Jeotgalicoccus coquinae DSM 22419
NCBI: GCA_014207425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	60.00	no
125439	motility	BacteriaNetⓘ	yes	68.90	no
125439	gram_stain	BacteriaNetⓘ	variable	83.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Jeotgalicoccus coquinae DSM 22419
NCBI: GCA_014207425.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.85	no
125438	anaerobic	anaerobicⓘ	no	97.24	no
125438	aerobic	aerobicⓘ	yes	75.53	no
125438	spore-forming	spore-formingⓘ	no	78.60	yes
125438	thermophilic	thermophileⓘ	no	98.42	yes
125438	flagellated	motile2+ⓘ	no	83.05	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jeotgalicoccus nanhaiensis sp. nov., isolated from intertidal sediment, and emended description of the genus Jeotgalicoccus.	Liu ZX, Chen J, Tang SK, Zhang YQ, He JW, Chen QH, Li WJ, Chen YG	Int J Syst Evol Microbiol	10.1099/ijs.0.022871-0	2010
Phylogeny	Jeotgalicoccus coquinae sp. nov. and Jeotgalicoccus aerolatus sp. nov., isolated from poultry houses.	Martin E, Klug K, Frischmann A, Busse HJ, Kampfer P, Jackel U	Int J Syst Evol Microbiol	10.1099/ijs.0.021675-0	2010

References

#16325	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22419
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26190	IJSEM 237 2011 ( DOI 10.1099/ijs.0.021675-0 , PubMed 20207804 )
#29813	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26190
#61539	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57956
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#118746	Collection of Institut Pasteur ; Curators of the CIP; CIP 111751
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Jeotgalicoccus coquinae (DSM 22419, CCM 7682, CCUG 57956)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014207425

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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