Name: Jeotgalicoccus pinnipedialis A/G14/99/10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14410

Type strain:

Species: Jeotgalicoccus pinnipedialis

Strain Designation: A/G14/99/10

Culture col. no.: DSM 17030, CCUG 42722, CIP 107946

Strain history: CIP <- 2003, CCUG <- M.D. Collins, Reading, UK <- L. Hoyles, Reading, UK <- G. Foster, Inverness, UK, strain A/G14/99/10

NCBI tax ID(s): 110845 (species)

SI-ID 87820

CCUG 42722, CIP 107946, DSM 17030

Special Collections

Section

Jeotgalicoccus pinnipedialis A/G14/99/10 is a microaerophile, Gram-positive, coccus-shaped bacterium that was isolated from Seal mouth, female southern elephant seal.

coccus-shaped
Gram-positive
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Jeotgalicoccus*
	Species	**Jeotgalicoccus pinnipedialis**
	Full Scientific Name (LPSN)	Jeotgalicoccus pinnipedialis Hoyles et al. 2004

Synonym

"Phocicoccus pinnipedialis"

Information on morphological and physiological properties Morphology

[Ref.: #30016]	Gram stain	positive
[Ref.: #121837]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.811

[Ref.: #30016]	Cell shape	coccus-shaped
[Ref.: #121837]	Cell shape	coccus-shaped

[Ref.: #30016]	Motility	no
[Ref.: #121837]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6694]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6694]

Culture medium growth

[Ref.: #6694]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6694]

Culture medium composition

expand / minimize

[Ref.: #6694]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6694]

Culture medium growth

[Ref.: #6694]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6694]

Culture medium composition

expand / minimize

[Ref.: #34311]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #34311]

Culture medium growth

[Ref.: #34311]

Culture medium composition

expand / minimize

[Ref.: #121837]

Culture medium

CIP Medium 45

[Ref.: #121837]

Culture medium growth

[Ref.: #121837]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6694]		growth	37 °C
[Ref.: #30016]		growth	25-42 °C
[Ref.: #30016]		optimum	33.5 °C
[Ref.: #34311]		growth	37 °C
[Ref.: #55531]		growth	37 °C
[Ref.: #121837]		growth	25-41 °C
[Ref.: #121837]	no	growth	10 °C
[Ref.: #121837]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6694]	Oxygen tolerance	microaerophile
[Ref.: #6694]	Oxygen tolerance	aerobe
[Ref.: #30016]	Oxygen tolerance	facultative anaerobe
[Ref.: #55531]	Oxygen tolerance	aerobe
[Ref.: #121837]	Oxygen tolerance	obligate aerobe

[Ref.: #30016]

Ability of spore formation

	Salt		Salt conc.
[Ref.: #30016]	NaCl	growth	02-06	%
[Ref.: #30016]	NaCl	optimum	4	%
[Ref.: #121837]	NaCl	growth	6.5	%

[Ref.: #30016]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121837]	esculin ChEBI	+	hydrolysis
[Ref.: #30016]	gelatin ChEBI	+	carbon source
[Ref.: #121837]	hippurate ChEBI	+	hydrolysis
[Ref.: #121837]	nitrate ChEBI	-	reduction
[Ref.: #121837]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121837]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #121837]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #30016]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #121837]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121837]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #30016]	catalase	+	1.11.1.6
[Ref.: #121837]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #30016]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #121837]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #30016]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121837]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #121837]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121837]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121837]	2507	not determinedn.d.	+	+	+	+	+	-	+	-	-	+	+	+	+	+	+	-	-	+	+	+	+	+	-	+	+	-	-	-	-	-	-	+	-	+	-	-	+	-	+	-	-	-	-	+	-	-	-	-	-	+	+	-	+	+	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	+	+	-	-	+	+	+	+	-	+	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121837]	10765	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6694]	Sample type/isolated from	Seal mouth, female southern elephant seal
[Ref.: #6694]	Geographic location (country and/or sea, region)	South Orkneys
[Ref.: #6694]	Country	Antarctica
[Ref.: #6694]	Country ISO 3 Code	ATA
[Ref.: #6694]	Continent	Australia and Oceania

[Ref.: #55531]	Sample type/isolated from	Seal mouth,female southern elephant seal
[Ref.: #55531]	Sampling date	1993
[Ref.: #55531]	Geographic location (country and/or sea, region)	South Orkneys
[Ref.: #55531]	Country	Antarctica
[Ref.: #55531]	Country ISO 3 Code	ATA
[Ref.: #55531]	Continent	Australia and Oceania

[Ref.: #121837]	Sample type/isolated from	Swab from the mouth of a female southern elephant seal
[Ref.: #121837]	Sampling date	1993
[Ref.: #121837]	Geographic location (country and/or sea, region)	South Orkneys, Scotland
[Ref.: #121837]	Country	United Kingdom
[Ref.: #121837]	Country ISO 3 Code	GBR
[Ref.: #121837]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host	#Mammals	-
#Host Body-Site	#Oral cavity and airways	#Mouth
#Host	#Human	#Female

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ251530 (>99% sequence identity) for Jeotgalicoccus pinnipedialis from Microbeatlas

Aquatic Samples	14
Soil Samples	142
Animal Samples	441
Plant Samples	5
Total Samples	602

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6694]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121837]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6694]	Jeotgalicoccus pinnipedialis partial 16S rRNA gene, type strain CCUG 42722T	AJ251530	1419	GenBank ENA	110845 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Jeotgalicoccus pinnipedialis CIP 107946	GCA_903994035	contig	GenBank ENA	110845 tax ID	*
[Ref.: #66792]	Jeotgalicoccus pinnipedialis DSM 17030	GCA_017873645	contig	GenBank ENA	110845 tax ID	*
[Ref.: #66792]	Jeotgalicoccus pinnipedialis strain CIP107946	110845.3	wgs	PATRIC	110845 tax ID	*
[Ref.: #66792]	Jeotgalicoccus pinnipedialis strain DSM 17030	110845.4	wgs	PATRIC	110845 tax ID	*
[Ref.: #66792]	Jeotgalicoccus pinnipedialis DSM 17030	2913376348	draft	JGI IMG/M	110845 tax ID	*

[Ref.: #6694]

GC-content

38.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Jeotgalicoccus pinnipedialis strain DSM 17030 PATRIC: 110845.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	88	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jeotgalicoccus pinnipedialis strain CIP107946 PATRIC: 110845.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.811	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.485	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.259	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	62.809	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.715	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #6694]

Culture collection no.

DSM 17030, CCUG 42722, CIP 107946

[Ref.: #83554]

SI-ID 87820

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jeotgalicoccus schoeneichii sp. nov. isolated from exhaust air of a pig barn.	Glaeser SP, Kleinhagauer T, Jackel U, Klug K, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.001230	2016	*
Phylogeny	Jeotgalicoccus pinnipedialis sp. nov., from a southern elephant seal (Mirounga leonina).	Hoyles L, Collins MD, Foster G, Falsen E, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.02833-0	2004	*

References

#6694

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17030

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30016

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26380 (see below)

#34311 ; Curators of the CIP;
#55531 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 42722

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83554

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87820.1 )

#121837 Collection of Institut Pasteur ; Curators of the CIP; CIP 107946

#26380

IJSEM 745 2004 ( DOI 10.1099/ijs.0.02833-0 , PubMed 15143018 )

* These data were automatically processed and therefore are not curated

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Jeotgalicoccus pinnipedialis strain DSM 17030

Jeotgalicoccus pinnipedialis strain CIP107946

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