Name: Sporolactobacillus vineae SL153
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14404

Type strain:

Species: Sporolactobacillus vineae

Strain Designation: SL153

Culture col. no.: DSM 21990, JCM 14637, KCTC 5376

Strain history: <- YH Chang, KRIBB, SL153

NCBI tax ID(s): 1123284 (strain), 444463 (species)

SI-ID 403072

DSM 21990

Section

Sporolactobacillus vineae SL153 is a microaerophile, spore-forming, mesophilic bacterium that was isolated from Vineyard soil.

Gram-positive
motile
rod-shaped
spore-forming
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Sporolactobacillaceae*
	Genus	*Sporolactobacillus*
	Species	**Sporolactobacillus vineae**
	Full Scientific Name (LPSN)	Sporolactobacillus vineae Chang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32514]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32514]	Cell length	01-04 µm

[Ref.: #32514]	Cell width	0.5 µm

[Ref.: #32514]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	curved-shaped

[Ref.: #32514]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #67771]	Flagellum arrangement	peritrichous

[Ref.: #32514]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16083]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #16083]

Culture medium growth

[Ref.: #16083]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16083]

Culture medium composition

expand / minimize

[Ref.: #16083]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16083]

Culture medium growth

[Ref.: #16083]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16083]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16083]	growth	30 °C
[Ref.: #32514]	growth	25-40 °C
[Ref.: #32514]	optimum	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #16083]	Temperature range	mesophilic
[Ref.: #32514]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32514]			optimum	06-07
[Ref.: #32514]			growth	04-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16083]	Oxygen tolerance	microaerophile
[Ref.: #32514]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	microaerophile

[Ref.: #67771]	Type of spore	spore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #32514]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.045

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32514]		NaCl		growth	0-7	%
[Ref.: #32514]		NaCl		optimum	0-7	%

[Ref.: #32514]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32514]	fructose ChEBI	+	carbon source
[Ref.: #32514]	glucose ChEBI	+	carbon source
[Ref.: #32514]	mannitol ChEBI	+	carbon source
[Ref.: #32514]	mannose ChEBI	+	carbon source
[Ref.: #32514]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32514]	sorbitol ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16083]	Sample type/isolated from	Vineyard soil
[Ref.: #16083]	Country	Republic of Korea
[Ref.: #16083]	Country ISO 3 Code	KOR
[Ref.: #16083]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Vineyard soil
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From vineyard soil
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Vineyard
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF581819 (>99% sequence identity) for Sporolactobacillus vineae subclade from Microbeatlas

Aquatic Samples	18
Soil Samples	40
Animal Samples	20
Plant Samples	11
Total Samples	89

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16083]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16083]	Sporolactobacillus sp. SL153 16S ribosomal RNA gene, partial sequence	EF581819	1418	ENA	1123284 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sporolactobacillus vineae DSM 21990 = SL153	GCA_000246965	contig	GenBank	1123284 tax ID
[Ref.: #67771]	Sporolactobacillus vineae DSM 21990 = SL153	GCA_000377985	scaffold	GenBank	1123284 tax ID
[Ref.: #66792]	Sporolactobacillus vineae DSM 21990 = SL153	1123284.3	wgs	PATRIC	1123284 tax ID	*
[Ref.: #66792]	Sporolactobacillus vineae DSM 21990	2518645619	draft	JGI IMG/M	1123284 tax ID	*
[Ref.: #66792]	Sporolactobacillus vineae SL153, DSM 21990	2551306548	draft	JGI IMG/M	1123284 tax ID	*

[Ref.: #16083]	GC-content	50.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32514]	GC-content	50.6-51.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sporolactobacillus vineae DSM 21990 = SL153 DSM 21990 NCBI: GCA_000377985.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sporolactobacillus vineae DSM 21990 = SL153 PATRIC: 1123284.3
[Ref.: #69480]	motile	yes	89.456	yes
[Ref.: #69480]	flagellated	yes	83.288	yes
[Ref.: #69480]	gram-positive	yes	89.378	yes
[Ref.: #69480]	anaerobic	no	93.871	yes
[Ref.: #69480]	aerobic	no	87.449	no
[Ref.: #69480]	halophile	yes	51.049	no
[Ref.: #69480]	spore-forming	yes	93.172	no
[Ref.: #69480]	thermophile	no	91.44	yes
[Ref.: #69480]	glucose-util	yes	85.086	yes
[Ref.: #69480]	glucose-ferment	no	65.002	no

Availability in culture collections External links

[Ref.: #16083]

Culture collection no.

DSM 21990, JCM 14637, KCTC 5376

[Ref.: #83548]

SI-ID 403072

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sporolactobacillus shoreae sp. nov. and Sporolactobacillus spathodeae sp. nov., two spore-forming lactic acid bacteria isolated from tree barks in Thailand.	Thamacharoensuk T, Kitahara M, Ohkuma M, Thongchul N, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijs.0.000084	2015	*
Genetics	Genome sequence of the probiotic bacterium Sporolactobacillus vineae SL153T.	Kim DS, Sin Y, Kim DW, Paek J, Kim RN, Jung MY, Park IS, Kim A, Kang A, Park HS, Choi SH, Chang YH	J Bacteriol	10.1128/JB.00452-12	2012	*
Phylogeny	Sporolactobacillus vineae sp. nov., a spore-forming lactic acid bacterium isolated from vineyard soil.	Chang YH, Jung MY, Park IS, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.65608-0	2008	*

References

#16083

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21990

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32514

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28734 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83548

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403072.1 )

#28734

IJSEM 2316 2008 ( DOI 10.1099/ijs.0.65608-0 , PubMed 18842848 )

* These data were automatically processed and therefore are not curated

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Sporolactobacillus vineae DSM 21990 = SL153 DSM 21990

Sporolactobacillus vineae DSM 21990 = SL153

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