Name: Spiroplasma turonicum Tab4c
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14380

Type strain:

Species: Spiroplasma turonicum

Strain Designation: Tab4c

Culture col. no.: DSM 22632, ATCC 700271

Strain history: <- J. K. Davis, Dept. Agronomy, Purdue Univ., West Lafayette, USA <- J. G. Tully <- R. F. Whitcomb, USDA <- C. Chastel <- F. Rodhain, CIP; Tab4c

NCBI tax ID(s): 216946 (species)

SI-ID 43857

ATCC 700271

Special Collections

DSMZ

Section

Spiroplasma turonicum Tab4c is a microaerophile bacterium that was isolated from Haematopota horse fly.

microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Mycoplasmatota*
	Class	*Mollicutes*
	Order	*Mycoplasmatales*
	Family	*Spiroplasmataceae*
	Genus	*Spiroplasma*
	Species	**Spiroplasma turonicum**
	Full Scientific Name (LPSN)	Spiroplasma turonicum Hélias et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %94.955

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16440]

Culture medium

SP4-Z MEDIUM (DSMZ Medium 1076b)

[Ref.: #16440]

Culture medium growth

[Ref.: #16440]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16440]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16440]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16440]

Oxygen tolerance

microaerophile

[Ref.: #69480]	Ability of spore formation	no Confidence in %93.903
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16440]	Sample type/isolated from	Haematopota horse fly
[Ref.: #16440]	Host species	Haematopota
[Ref.: #16440]	Geographic location (country and/or sea, region)	Touraine, Indre-et-Loire, Champchevrier (46°21' N 0°25' E)
[Ref.: #16440]	Country	France
[Ref.: #16440]	Country ISO 3 Code	FRA
[Ref.: #16440]	Continent	Europe
[Ref.: #16440]	Geographic location	46.3500°/0.4167°
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_025712 (>99% sequence identity) for Spiroplasma from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples	105
Plant Samples	1
Total Samples	108

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16440]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16440]	Spiroplasma turonicum strain Tab-4c 16S ribosomal RNA, partial sequence	NR_025712	1516	GenBank ENA	216946 tax ID
[Ref.: #20218]	Spiroplasma turonicum 16S ribosomal RNA gene, partial sequence	AY189310	1516	GenBank ENA	216946 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Spiroplasma turonicum Tab4c	GCA_001262715	complete	GenBank ENA	216946 tax ID	*
[Ref.: #66792]	Spiroplasma turonicum TAB4c	GCA_001513715	complete	GenBank ENA	216946 tax ID	*
[Ref.: #66792]	Spiroplasma turonicum strain Tab4c	216946.3	complete	PATRIC	216946 tax ID	*
[Ref.: #66792]	Spiroplasma turonicum TAB4c	2675903537	complete	JGI IMG/M	216946 tax ID	*
[Ref.: #66792]	Spiroplasma turonicum Tab4c	2651869855	complete	JGI IMG/M	216946 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Spiroplasma turonicum Tab4c NCBI: GCA_001262715.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Spiroplasma turonicum Tab4c NCBI: GCA_001262715.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	69.637	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	78.874	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.16	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.903	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.816	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94.955	no

Availability in culture collections External links

[Ref.: #16440]

Culture collection no.

DSM 22632, ATCC 700271

[Ref.: #83523]

SI-ID 43857

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Spiroplasma turonicum Tab4cT, a Bacterium Isolated from Horse Flies (Haematopota sp.).	Lo WS, Gasparich GE, Kuo CH	Genome Announc	10.1128/genomeA.01010-16	2016	*
Genetics	Complete Genome Sequence of Spiroplasma turonicum Strain Tab4cT, a Parasite of a Horse Fly, Haematopota sp. (Diptera: Tabanidae).	Davis RE, Shao J, Zhao Y, Gasparich GE, Gaynor BJ, Donofrio N	Genome Announc	10.1128/genomeA.01367-15	2015	*
Phylogeny	Spiroplasma turonicum sp. nov. from Haematopota horse flies (Diptera: Tabanidae) in France.	Helias C, Vazeille-Falcoz M, Le Goff F, Abalain-Colloc ML, Rodhain F, Carle P, Whitcomb RF, Williamson DL, Tully JG, Bove JM, Chastel C	Int J Syst Bacteriol	10.1099/00207713-48-2-457	1998	*

References

#16440

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22632

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83523

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43857.1 )

* These data were automatically processed and therefore are not curated

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