Name: Parageobacillus thermantarcticus M1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1438

Type strain:

Species: Parageobacillus thermantarcticus

Strain Designation: M1, R-35644

Culture col. no.: DSM 9572, LMG 23032

Strain history: <- A. Gambacorta; M1

NCBI tax ID(s): 186116 (species)

SI-ID 10542

LMG 17953, DSM 9572, ATCC 700235, LMG 23032, KCTC 3974

Section

Parageobacillus thermantarcticus M1 is an obligate aerobe, chemoorganotroph, spore-forming bacterium that forms circular colonies and was isolated from geothermal soil.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
chemoorganotroph
obligate aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Parageobacillus*
	Species	**Parageobacillus thermantarcticus**
	Full Scientific Name (LPSN)	Parageobacillus thermantarcticus (Nicolaus et al. 2002) Aliyu et al. 2019

	Synonym	"Parageobacillus* thermantarcticus"*
	Synonym	Geobacillus thermantarcticus
	Synonym	Bacillus thermoantarcticus
	Synonym	Bacillus thermantarcticus

Information on morphological and physiological properties Morphology

[Ref.: #23042]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23042]	Cell length	3.0-5.0 µm

[Ref.: #23042]	Cell width	0.5-2.0 µm

[Ref.: #23042]	Cell shape	rod-shaped

[Ref.: #23042]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.315

[Ref.: #23042]	Colony size	<0.5 mm
[Ref.: #23042]	Colony color	whitish to cream
[Ref.: #23042]	Colony shape	circular
[Ref.: #23042]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3640]

Culture medium

BACILLUS THERMANTARCTICUS MEDIUM (DSMZ Medium 675)

[Ref.: #3640]

Culture medium growth

[Ref.: #3640]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3640]

Culture medium composition

expand / minimize

[Ref.: #23042]

Culture medium

trypticase soy agar

[Ref.: #23042]

Culture medium growth

		Temperature
[Ref.: #3640]	growth	55 °C
[Ref.: #23042]	growth	37.0 °C
[Ref.: #23042]	growth	80.0 °C
[Ref.: #23042]	optimum	60.0 °C

[Ref.: #3640]	Temperature range	thermophilic
[Ref.: #23042]	Temperature range	mesophilic
[Ref.: #23042]	Temperature range	hyperthermophilic
[Ref.: #23042]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.709

	Kind of pH		pH
[Ref.: #23042]		optimum	6.0
[Ref.: #23042]		growth	5.5-9.0
[Ref.: #23042]	no	growth	5.0
[Ref.: #23042]		growth	9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23042]

Oxygen tolerance

obligate aerobe

[Ref.: #23042]

Nutrition type

chemoorganotroph

[Ref.: #23042]	Spore description	ellipsoidal,terminal or subterminal,in swollen sporangia
[Ref.: #23042]	Type of spore	endospore
[Ref.: #23042]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #23042]	NaCl		growth	<3.0	%
[Ref.: #23042]	NaCl	no	growth	5.0	%
[Ref.: #23042]	NaCl		growth	1.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23042]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23042]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23042]	amygdalin ChEBI	-	builds acid from
[Ref.: #23042]	arbutin ChEBI	-	builds acid from
[Ref.: #23042]	casein	-	hydrolysis
[Ref.: #23042]	cellobiose ChEBI	-	builds gas from
[Ref.: #23042]	cellobiose ChEBI	+	builds acid from
[Ref.: #23042]	citrate ChEBI	-	carbon source
[Ref.: #23042]	D-arabinose ChEBI	-	builds acid from
[Ref.: #23042]	D-arabitol ChEBI	-	builds acid from
[Ref.: #23042]	D-fructose ChEBI	-	builds gas from
[Ref.: #23042]	D-fructose ChEBI	+	builds acid from
[Ref.: #23042]	D-fucose ChEBI	-	builds acid from
[Ref.: #23042]	D-glucose ChEBI	-	builds gas from
[Ref.: #23042]	D-glucose ChEBI	+	builds acid from
[Ref.: #23042]	D-lyxose ChEBI	-	builds acid from
[Ref.: #23042]	D-mannose ChEBI	-	builds gas from
[Ref.: #23042]	D-mannose ChEBI	+	builds acid from
[Ref.: #23042]	D-tagatose ChEBI	-	builds acid from
[Ref.: #23042]	D-xylose ChEBI	-	builds gas from
[Ref.: #23042]	D-xylose ChEBI	+	builds acid from
[Ref.: #23042]	erythritol ChEBI	-	builds acid from
[Ref.: #23042]	esculin ChEBI	+	hydrolysis
[Ref.: #23042]	galactitol ChEBI	-	builds acid from
[Ref.: #23042]	galactose ChEBI	-	builds gas from
[Ref.: #23042]	galactose ChEBI	+	builds acid from
[Ref.: #23042]	gelatin ChEBI	+	hydrolysis
[Ref.: #23042]	gentiobiose ChEBI	-	builds acid from
[Ref.: #23042]	gluconate ChEBI	-	builds acid from
[Ref.: #23042]	glucose ChEBI	+	carbon source
[Ref.: #23042]	glycerol ChEBI	-	builds gas from
[Ref.: #23042]	glycerol ChEBI	+	builds acid from
[Ref.: #23042]	glycogen ChEBI	-	builds acid from
[Ref.: #23042]	hippurate ChEBI	-	degradation
[Ref.: #23042]	inulin ChEBI	-	builds acid from
[Ref.: #23042]	L-arabinose ChEBI	-	builds acid from
[Ref.: #23042]	L-arabitol ChEBI	-	builds acid from
[Ref.: #23042]	L-fucose ChEBI	-	builds acid from
[Ref.: #23042]	L-sorbose ChEBI	-	builds gas from
[Ref.: #23042]	L-sorbose ChEBI	+	builds acid from
[Ref.: #23042]	L-xylose ChEBI	-	builds acid from
[Ref.: #23042]	lactose ChEBI	-	builds acid from
[Ref.: #23042]	maltose ChEBI	-	builds gas from
[Ref.: #23042]	maltose ChEBI	+	builds acid from
[Ref.: #23042]	mannitol ChEBI	-	builds acid from
[Ref.: #23042]	melezitose ChEBI	-	builds acid from
[Ref.: #23042]	melibiose ChEBI	-	builds acid from
[Ref.: #23042]	methyl D-glucoside ChEBI	-	builds gas from
[Ref.: #23042]	methyl D-glucoside ChEBI	+	builds acid from
[Ref.: #23042]	myo-inositol ChEBI	-	builds acid from
[Ref.: #23042]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #23042]	nitrate ChEBI	-	reduction
[Ref.: #23042]	O-nitrophenyl-beta-D-galactopyranosid	-	hydrolysis
[Ref.: #23042]	propionate ChEBI	-	carbon source
[Ref.: #23042]	raffinose ChEBI	-	builds acid from
[Ref.: #23042]	rhamnose ChEBI	-	builds acid from
[Ref.: #23042]	ribitol ChEBI	-	builds acid from
[Ref.: #23042]	ribose ChEBI	-	builds acid from
[Ref.: #23042]	salicin ChEBI	-	builds gas from
[Ref.: #23042]	salicin ChEBI	+	builds acid from
[Ref.: #23042]	sorbitol ChEBI	-	builds acid from
[Ref.: #23042]	starch ChEBI	-	builds gas from
[Ref.: #23042]	starch ChEBI	-	hydrolysis
[Ref.: #23042]	starch ChEBI	+	builds acid from
[Ref.: #23042]	sucrose ChEBI	-	builds gas from
[Ref.: #23042]	sucrose ChEBI	+	builds acid from
[Ref.: #23042]	trehalose ChEBI	-	builds gas from
[Ref.: #23042]	trehalose ChEBI	+	builds acid from
[Ref.: #23042]	trehalose ChEBI	+	carbon source
[Ref.: #23042]	tryptophan ChEBI	-	energy source
[Ref.: #23042]	turanose ChEBI	-	builds gas from
[Ref.: #23042]	turanose ChEBI	+	builds acid from
[Ref.: #23042]	tyrosine ChEBI	-	degradation
[Ref.: #23042]	xylitol ChEBI	-	builds acid from
[Ref.: #23042]	xylose ChEBI	+	carbon source
[Ref.: #23042]	yeast extract	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23042]	acetoin ChEBI	yes
[Ref.: #23042]	hydrogen sulfide ChEBI	no
[Ref.: #23042]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Indole test	Citrate test
[Ref.: #23042]	acetoin ChEBI	+
[Ref.: #23042]	citrate ChEBI			-
[Ref.: #23042]	indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #23042]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23042]	catalase	+	1.11.1.6
[Ref.: #23042]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23042]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23042]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #23042]	tryptophan deaminase	-	4.1.99.1
[Ref.: #23042]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3640]	Sample type/isolated from	geothermal soil
[Ref.: #3640]	Geographic location (country and/or sea, region)	Mount Melbourne
[Ref.: #3640]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR749959 (>99% sequence identity) for Bacillaceae from Microbeatlas

Aquatic Samples	2043
Soil Samples	4724
Animal Samples	5920
Plant Samples	1962
Total Samples	14649

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3640]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3640]	Geobacillus thermantarcticus partial 16S rRNA gene, type strain R-35644T	FN428692	1508	ENA	186116 tax ID
[Ref.: #20218]	Bacillus thermantarcticus partial 16S rRNA gene, type strain DSM 9572T, clone 1	FR749957	1551	ENA	186116 tax ID	*
[Ref.: #20218]	Bacillus thermantarcticus partial 16S rRNA gene, type strain DSM 9572T, clone 2	FR749958	1551	ENA	186116 tax ID	*
[Ref.: #20218]	Bacillus thermantarcticus partial 16S rRNA gene, type strain DSM 9572T, clone 3	FR749959	1600	ENA	186116 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Parageobacillus thermantarcticus M1	GCA_900111865	scaffold	GenBank	186116 tax ID	*
[Ref.: #66792]	Parageobacillus thermantarcticus M1	2654588109	draft	JGI IMG/M	186116 tax ID	*

[Ref.: #3640]	GC-content	53.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23042]	GC-content	53.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Parageobacillus thermantarcticus M1 NCBI: GCA_900111865.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Parageobacillus thermantarcticus M1 NCBI: GCA_900111865.1
[Ref.: #69480]	motile	yes	91.003	yes
[Ref.: #69480]	flagellated	yes	84.927	no
[Ref.: #69480]	gram-positive	yes	84.833	no
[Ref.: #69480]	anaerobic	no	97.533	yes
[Ref.: #69480]	aerobic	yes	88.759	yes
[Ref.: #69480]	halophile	no	94.249	yes
[Ref.: #69480]	spore-forming	yes	96.617	yes
[Ref.: #69480]	glucose-ferment	no	88.302	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-util	yes	91.369	no

Availability in culture collections External links

[Ref.: #3640]

Culture collection no.

DSM 9572, LMG 23032

[Ref.: #71088]

SI-ID 10542

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic revision of the genus Geobacillus: emendation of Geobacillus, G. stearothermophilus, G. jurassicus, G. toebii, G. thermodenitrificans and G. thermoglucosidans (nom. corrig., formerly 'thermoglucosidasius'); transfer of Bacillus thermantarcticus to the genus as G. thermantarcticus comb. nov.; proposal of Caldibacillus debilis gen. nov., comb. nov.; transfer of G. tepidamans to Anoxybacillus as A. tepidamans comb. nov.; and proposal of Anoxybacillus caldiproteolyticus sp. nov.	Coorevits A, Dinsdale AE, Halket G, Lebbe L, De Vos P, Van Landschoot A, Logan NA	Int J Syst Evol Microbiol	10.1099/ijs.0.030346-0	2011	*

References

#3640

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9572

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23042

An Coorevits,Anna E. Dinsdale,Gillian Halket,Liesbeth Lebbe,Paul De Vos,Anita Van Landschoot,Niall A. Logan: Taxonomic revision of the genus Geobacillus : emendation of Geobacillus , G. stearothermophilus , G. jurassicus , G. toebii , G. thermodenitrificans and G. thermoglucosidans (nom. corrig., formerly 'thermoglucosidasius'); transfer of Bacillus thermantarcticus to the genus as G. thermantarcticus comb. nov.; proposal of Caldibacillus debilis gen. nov., comb. nov.; transfer of G. tepidamans to Anoxybacillus as A. tepidamans comb. nov.; and proposal of Anoxybacillus caldiproteolyticus sp. nov.. IJSEM 62: 1470 - 1485 2012 ( DOI 10.1099/ijs.0.030346-0 , PubMed 21856988 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71088

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10542.1 )

* These data were automatically processed and therefore are not curated

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