Geobacillus kaustophilus (DSM 7263, ATCC 8005, NCIMB 8547)

Name: Geobacillus kaustophilus (DSM 7263, ATCC 8005, NCIMB 8547)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1437

Type strain

Strain Designation BD 53, T 281, NRS-81

Culture col. no. DSM 7263 ATCC 8005 NCIMB 8547 NRRL NRS-81 CCUG 28890 10 more

NCBI tax ID(s) 1220595 1462

Special Collections DSMZ CCUG JCM CIP Literature strains

History <- NRRL <- ATCC IAM 11001 <-- A. E. Humphery <-- ATCC 8005 <-- M. W. Yale BD53 <-- P. S. Prickett. CIP <- 2001, CCUG <- 1991, L.K. Nakamura, NRRL, Peoria, USA: strain NRS-81

Links

Geobacillus kaustophilus BD 53 is an aerobe, chemoorganotroph, spore-forming prokaryote that was isolated from pasteurized milk.

spore-forming Gram-positive rod-shaped aerobe chemoorganotroph thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 1125

LMG 9819,ATCC 8005,IAM 11001,LMG 18061,LMG 18994,NCFB 1098,NCIMB 8547,NRRL NRS-81,CCUG 28890,CIP 106929,NCDO1098,LMD 30.3,CECT 4264,CCRC 11223,NRRL NRS-7281,KCTC 3397,NCCB 30003,BCRC 11223,NBRC 102445,JCM 20319,DSM 7263

@ref 20215

Last LPSN update 2026-02-09 11:18:06

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Geobacillus

Species Geobacillus kaustophilus

Full scientific name Geobacillus kaustophilus (Priest et al. 1989 ex Prickett 1928) Nazina et al. 2001

Synonyms (1)

Bacillus kaustophilus

BacDive ID	Other strains from **Geobacillus kaustophilus** (4)	Type strain
161281	G. kaustophilus JCM 12893
163961	G. kaustophilus JCM 31151
163962	G. kaustophilus JCM 31152
163963	G. kaustophilus JCM 31153

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
23044	positive	rod-shaped
120393	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3082	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
38651	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120393	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3082	positive	growth	55	thermophilic
23044	positive	growth	37.0-75.0
23044	positive	optimum	55.0-65.0	thermophilic
23044				thermophilic
38651	positive	growth	55	thermophilic
49445	positive	growth	56	thermophilic
67770	positive	growth	55	thermophilic
120393	positive	growth	45-55	thermophilic
120393	negative	growth	10
120393	negative	growth	22
120393	negative	growth	30
120393	negative	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
23044	positive	optimum	6.2-7.5
23044	positive	growth	6.0-8.5	alkaliphile
120393	positive	growth	6

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
49445	aerobe
120393	obligate aerobe

Nutrition type

23044

Typechemoorganotroph

Spore formation

@ref	Type of spore	Confidence
23044	endospore
120393
125438		92.472

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120393	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
120393	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
120393	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
23044	28757 ChEBI	fructose	-	builds gas from
23044	28757 ChEBI	fructose	+	builds acid from
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
23044	17234 ChEBI	glucose	-	builds gas from
23044	17234 ChEBI	glucose	+	builds acid from
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
120393	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23044	17306 ChEBI	maltose	-	builds gas from
23044	17306 ChEBI	maltose	+	builds acid from
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
23044	37684 ChEBI	mannose	-	builds gas from
23044	37684 ChEBI	mannose	+	builds acid from
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
120393	17632 ChEBI	nitrate	+	reduction
120393	17632 ChEBI	nitrate	-	respiration
120393	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
23044	17992 ChEBI	sucrose	-	builds gas from
23044	17992 ChEBI	sucrose	+	builds acid from
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
23044	18186 ChEBI	tyrosine	-	degradation
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite
23044	15688 ChEBI	acetoin
23044	35581 ChEBI	indole
120393	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
23044	15688 ChEBI	acetoin	-
120393	15688 ChEBI	acetoin	-
120393	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120393	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
120393	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120393	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120393	gamma-glutamyltransferase	-	2.3.2.2
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
120393	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120393	ornithine decarboxylase	-	4.1.1.17
120393	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
120393	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120393	-	-	+	+	-	-	-	-	-	+	+	+	+	+	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
120393	not determinedn.d.	-	-	-	-	+/-	+	-	-	-	+/-	+	+	+	-	-	-	-	+	-	-	+/-	+	-	+	+	+	+/-	+	+/-	+/-	-	+	-	+/-	-	+	+	-	-	+/-	-	-	-	-	-	-	+/-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product
#Engineered	#Treatment	#Preserved
#Engineered	#Treatment	#Sterilized (Desinfected)

Isolation

@ref	Sample type
3082	pasteurized milk
49445	Pasteurized milk
67770	Pasteurized milk
120393	Food, Pasteurized milk

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3082	1	Risk group (German classification) According to TRBA 466
120393	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM516006v1 assembly for Geobacillus kaustophilus NBRC 102445	complete	GCA_005160065	1220595.8	2843255297	1220595	95.88
67770	ASM73995v1 assembly for Geobacillus kaustophilus NBRC 102445	contig	GCA_000739955	1220595.3	2600255052	1220595	55.03

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Geobacillus kaustophilus strain BCRC 11223 16S ribosomal RNA gene, partial sequence	EU484357	1402	1462
20218	Geobacillus kaustophilus isolate Gk9 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723627	845	1462
20218	Geobacillus kaustophilus isolate Gk11 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723628	999	1462
20218	Geobacillus kaustophilus isolate Gk12 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723629	666	1462
20218	Geobacillus kaustophilus isolate Gk24 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723630	865	1462
20218	Geobacillus kaustophilus gene for 16S rRNA, partial sequence	AB006927	281	1462
20218	Geobacillus kaustophilus gene for 16S rRNA, partial sequence, strain: NBRC 102445	AB681787	1483	1462
20218	B.kaustophilus 16S ribosomal RNA	X60618	1432	1462

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Geobacillus kaustophilus NBRC 102445
NCBI: GCA_005160065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	63.50	no
125439	gram_stain	BacteriaNetⓘ	variable	77.90	no
125439	motility	BacteriaNetⓘ	yes	79.90	no
125439	spore_formation	BacteriaNetⓘ	yes	84.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Geobacillus kaustophilus NBRC 102445 NBRC 102445
NCBI: GCA_005160065.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	76.20	yes
125438	anaerobic	anaerobicⓘ	no	94.10	no
125438	aerobic	aerobicⓘ	yes	79.49	yes
125438	spore-forming	spore-formingⓘ	yes	92.47	yes
125438	thermophilic	thermophileⓘ	yes	65.85	no
125438	flagellated	motile2+ⓘ	yes	80.01	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Similarities of Geobacillus bacteria based on their profiles of antimicrobial susceptibility in milk samples.	Nagel OG, Gasparotti ML, Machado SI, Althaus RL.	Rev Argent Microbiol	10.1016/j.ram.2023.07.003	2024
Enzymology	Nitrile as Activating Group in the Asymmetric Bioreduction of beta-Cyanoacrylic Acids Catalyzed by Ene-Reductases.	Winkler CK, Clay D, Turrini NG, Lechner H, Kroutil W, Davies S, Debarge S, O'Neill P, Steflik J, Karmilowicz M, Wong JW, Faber K.	Adv Synth Catal	10.1002/adsc.201301055	2014
Metabolism	Overcoming co-product inhibition in the nicotinamide independent asymmetric bioreduction of activated C=C-bonds using flavin-dependent ene-reductases.	Winkler CK, Clay D, van Heerden E, Faber K.	Biotechnol Bioeng	10.1002/bit.24981	2013
Metabolism	NAD(P)H-independent asymmetric C=C bond reduction catalyzed by ene reductases by using artificial co-substrates as the hydrogen donor.	Winkler CK, Clay D, Entner M, Plank M, Faber K.	Chemistry	10.1002/chem.201303897	2014
Genetics	Development and implementation of rapid metabolic engineering tools for chemical and fuel production in Geobacillus thermoglucosidasius NCIMB 11955.	Sheng L, Kovacs K, Winzer K, Zhang Y, Minton NP.	Biotechnol Biofuels	10.1186/s13068-016-0692-x	2017
Metabolism	Identification and characterisation of capidermicin, a novel bacteriocin produced by Staphylococcus capitis.	Lynch D, O'Connor PM, Cotter PD, Hill C, Field D, Begley M.	PLoS One	10.1371/journal.pone.0223541	2019
Metabolism	Asymmetric bioreduction of activated alkenes to industrially relevant optically active compounds.	Winkler CK, Tasnadi G, Clay D, Hall M, Faber K.	J Biotechnol	10.1016/j.jbiotec.2012.03.023	2012
Enzymology	Functional Characterization, Genome Assembly, and Annotation of Geobacillus sp. G4 Isolated from a Geothermal Field in Tacna, Peru.	Ticona ARP, Santos KCR, Ramirez-Arua HE, Castellanos R, Silva JP, Hamann PRV, Noronha EF, Lopes FAC.	Microorganisms	10.3390/microorganisms13061374	2025
	Correlating the succession of microbial communities from Nigerian soils to petroleum biodegradation.	Iturbe-Espinoza P, Bonte M, Weedon JT, Braster M, Brandt BW, van Spanning RJ.	World J Microbiol Biotechnol	10.1007/s11274-023-03656-7	2023
Enzymology	Counterselection system for Geobacillus kaustophilus HTA426 through disruption of pyrF and pyrR.	Suzuki H, Murakami A, Yoshida K.	Appl Environ Microbiol	10.1128/aem.01669-12	2012
	Analysis of r-protein and RNA conformation of 30S subunit intermediates in bacteria.	Napper N, Culver GM.	RNA	10.1261/rna.048918.114	2015
	Engineering of Geobacillus kaustophilus lipase for enhanced catalytic efficiency and methanol tolerance in biodiesel production from sunflower oil.	Tulek A, Poyraz Y, Sukur G, Pacal N, Ozdemir FI, Yildirim D, Essiz S.	Int J Biol Macromol	10.1016/j.ijbiomac.2025.148467	2025
	Old yellow enzyme-catalyzed desymmetrizing desaturation.	Wang H, Ye Y.	Methods Enzymol	10.1016/bs.mie.2025.08.018	2025
Enzymology	Immobilization of L-asparaginase on genipin and divinyl sulfone cross-linked multi-walled carbon nanotubes and silica supports for acrylamide mitigation.	Tulek A, Sukur G, Ozdemir FI, Varan NE, Yildirim D.	Food Chem	10.1016/j.foodchem.2025.145268	2025
	Synergistic mechanisms of compound thermophilic bacteria on waste sludge hydrolysis and reduction: Extracellular polymers degradation, enzyme activity and microbial community changes.	Sui M, Miao K, Tang L, Zhao J, Jin C, Zhao Y, Guo L.	Sci Total Environ	10.1016/j.scitotenv.2025.180311	2025
Phylogeny	Integrated Proteomic and Molecular Identification of Thermophilic Geobacillus Strains from Algerian Desert Sands and Their Enzymatic Potential.	Hammadi AI, Merzoug M, Aireche M, Zater ZY, Bendida K, Brakna CN, Choubane S, Todorov SD, Saidi D.	Life (Basel)	10.3390/life15081327	2025
	Enhanced Thermostability of an Improved l-Arabinose Isomerase Mutant for d-Tagatose Synthesis by Molecular Dynamics Simulations-Guided Rational Redesign of Flexible Regions.	Ravikumar Y, Arsalan A, Tang X, Zhang G, Qi X.	J Agric Food Chem	10.1021/acs.jafc.5c03396	2025
Enzymology	Expression and characterization of a thermostable monoacylglycerol lipase from thermophilic Geobacillus kaustophilus.	Doukyu N, Ito H, Sugimoto K.	Prep Biochem Biotechnol	10.1080/10826068.2024.2361147	2025
Phylogeny	Integrated Proteomic and Molecular Identification of Thermophilic Geobacillus Strains from Algerian Desert Sands and Their Enzymatic Potential	Hammadi A, Merzoug M, Aireche M, Zater Z, Bendida K, Brakna C, Choubane S, Todorov S, Saidi D.	Life (Basel)		2025
	Raw starch degrading alkaline alpha-amylase from Geobacillus kaustophilus TSCCA02: Production, characterization, and its potential for application as a detergent additive.	Phonlamai A, Kingkaew T, Prajanket P, Sakdapetsiri C, Krajangsang S, Kitpreechavanich V, Lomthong T.	J Basic Microbiol	10.1002/jobm.202300653	2024
Enzymology	Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores.	Maeno M, Ohmori T, Nukada D, Sakuraba H, Satomura T, Ohshima T.	Biochim Biophys Acta Proteins Proteom	10.1016/j.bbapap.2023.140904	2023
	Functional annotation of haloacid dehalogenase superfamily structural genomics proteins.	Pathira Kankanamge LS, Ruffner LA, Touch MM, Pina M, Beuning PJ, Ondrechen MJ.	Biochem J	10.1042/bcj20230057	2023
	Investigation of molecular details of a bacterial cationic amino acid transporter (GkApcT) during arginine transportation using molecular dynamics simulation and umbrella sampling techniques.	Afshinpour M, Parsi P, Mahdiuni H.	J Mol Model	10.1007/s00894-023-05670-w	2023
Enzymology	Exploring the Kinetics and Thermodynamics of a Novel Histidine Ammonia-Lyase from Geobacillus kaustophilus.	Salas-Garrucho FM, Carrillo-Moreno A, Contreras LM, Rodriguez-Vico F, Clemente-Jimenez JM, Las Heras-Vazquez FJ.	Int J Mol Sci	10.3390/ijms251810163	2024
Enzymology	The bacterial tRNA-modifying enzyme tRNA^Ile lysidine synthetase is genetically conserved but catalytically variable.	Muraski MJ, Guinto FC, Nilsson EM, Dabdoub JB, Robinson SC, Jiang Y, Shen Z, Alexander RW.	J Biol Chem	10.1016/j.jbc.2025.110688	2025
Genetics	Simple sequence repeat insertion induced stability and potential 'gain of function' in the proteins of extremophilic bacteria.	Mahfooz S, Shankar G, Narayan J, Singh P, Akhter Y.	Extremophiles	10.1007/s00792-022-01265-0	2022
	Functional analysis of a gene cluster for putative bacteriocin deduced from the genome sequence of Aeribacillus pallidus PI8.	Kita K, Yoshida S, Ishikawa S, Yoshida KI.	J Gen Appl Microbiol	10.2323/jgam.2021.11.003	2022
Metabolism	Structural and functional characterization of a putative carbonic anhydrase from Geobacillus kaustophilus reveals its cambialistic function.	Sridharan U, Ragunathan P, Kuramitsu S, Yokoyama S, Kumarevel T, Ponnuraj K.	Biochem Biophys Res Commun	10.1016/j.bbrc.2021.02.036	2021
Metabolism	Identification of a repressor for the two iol operons required for inositol catabolism in Geobacillus kaustophilus.	Yoshida KI, Shirae Y, Nishimura R, Fukui K, Ishikawa S.	Microbiology (Reading)	10.1099/mic.0.001008	2021
Genetics	The microbiome-restorative potential of ibezapolstat for the treatment of Clostridioides difficile infection is predicted through variant PolC-type DNA polymerase III in Lachnospiraceae and Oscillospiraceae.	McPherson JK, Hurdle JG, Baker ML, Hussain T, Kumar A, Garey KW.	Antimicrob Agents Chemother	10.1128/aac.01679-24	2025
Transcriptome	Transcriptome and growth efficiency comparisons of recombinant thermophiles that produce thermolabile and thermostable proteins: implications for burden-based selection of thermostable proteins.	Suzuki H, Okumura Y, Mikawa Y, Takata M, Yoshimura S, Ohshiro T.	Extremophiles	10.1007/s00792-021-01237-w	2021
Metabolism	Novel serine/threonine-O-glycosylation with N-acetylneuraminic acid and 3-deoxy-D-manno-octulosonic acid by bacterial flagellin glycosyltransferases.	Khairnar A, Sunsunwal S, Babu P, Ramya TNC.	Glycobiology	10.1093/glycob/cwaa084	2021
Genetics	Machine learning-guided discovery of thermophilic carbonic anhydrases from environmental metagenomes.	Pairoh S, Mhuantong W, Boonyapakron K, Yuvaniyama J, Kanokratana P, Bunterngsook B, Lekakarn H, Arunrattanamook N, Laothanachareon T, Champreda V.	Sci Rep	10.1038/s41598-025-24713-1	2025
	Asymmetric C-Alkylation of Nitroalkanes via Enzymatic Photoredox Catalysis.	Fu H, Qiao T, Carceller JM, MacMillan SN, Hyster TK.	J Am Chem Soc	10.1021/jacs.2c12197	2023
	Identification, characterization and hydrolase producing performance of thermophilic bacteria: geothermal hot springs in the Eastern and Southeastern Anatolia Regions of Turkey.	Ulucay O, Gormez A, Ozic C.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01678-5	2022
	A New Tool for the Flexible Genetic Manipulation of Geobacillus kaustophilus.	Amatsu R, Mori K, Ishikawa S, Meijer WJJ, Yoshida KI.	Bio Protoc	10.21769/bioprotoc.4502	2022
	A novel method for transforming Geobacillus kaustophilus with a chromosomal segment of Bacillus subtilis transferred via pLS20-dependent conjugation.	Mori K, Fukui K, Amatsu R, Ishikawa S, Verrone V, Wipat A, Meijer WJJ, Yoshida KI.	Microb Cell Fact	10.1186/s12934-022-01759-8	2022
	Thermostable Bacterial Esterases From Lipase Family 1.5 Degrade Compostable Polyesters PBAT and PBSA.	Ahmed FH, Esquirol L, French NG, Rocha RA, Cass P, Scott C.	Microbiologyopen	10.1002/mbo3.70144	2025
Metabolism	Directed Computational Evolution of Quorum-Quenching Lactonases from the Amidohydrolase Superfamily.	Go MK, Zhao LN, Xue B, Supekar S, Robinson RC, Fan H, Yew WS.	Structure	10.1016/j.str.2020.03.011	2020
Metabolism	Permeabilized Escherichia coli Whole Cells Containing Co-Expressed Two Thermophilic Enzymes Facilitate the Synthesis of scyllo-Inositol from myo-Inositol.	Li Y, Liu S, You C.	Biotechnol J	10.1002/biot.201900191	2020
Metabolism	Directed Evolution of Quorum-Quenching Enzymes: A Method for the Construction of a Directed Evolution Platform and Characterization of a Quorum-Quenching Lactonase from Geobacillus kaustophilus.	Go MK, Chow JY, Yew WS.	Methods Mol Biol	10.1007/978-1-4939-7309-5_24	2018
	Improving Catalytic Efficiency of L-Arabinose Isomerase from Lactobacillus plantarum CY6 towards D-Galactose by Molecular Modification.	Lu C, Chen Z, Ravikumar Y, Zhang G, Tang X, Zhang Y, Zhao M, Sun W, Qi X.	Foods	10.3390/foods13111727	2024
Enzymology	Structure of Urocanate Hydratase from the protozoan Trypanosoma cruzi.	Boreiko S, Silva M, de F P Melo R, Silber AM, Iulek J.	Int J Biol Macromol	10.1016/j.ijbiomac.2019.12.101	2020
	Frequent Transposition of Multiple Insertion Sequences in Geobacillus kaustophilus HTA426.	Suzuki H, Taketani T, Tanabiki M, Ohara M, Kobayashi J, Ohshiro T.	Front Microbiol	10.3389/fmicb.2021.650461	2021
	Production Optimization and Biochemical Characterization of Cellulase from Geobacillus sp. KP43 Isolated from Hot Spring Water of Nepal.	Khadka S, Khadka D, Poudel RC, Bhandari M, Baidya P, Sijapati J, Maharjan J.	Biomed Res Int	10.1155/2022/6840409	2022
	Fate of oxygen species from O₂ activation at dimetal cofactors in an oxidase enzyme revealed by ⁵⁷Fe nuclear resonance X-ray scattering and quantum chemistry.	Mebs S, Srinivas V, Kositzki R, Griese JJ, Hogbom M, Haumann M.	Biochim Biophys Acta Bioenerg	10.1016/j.bbabio.2019.148060	2019
Genetics	Comparative analysis of fecal DNA viromes in Large-billed crows and Northern ravens reveals diverse viral profiles.	Dong Y, Fan S, He S, Zhao W, Lancuo Z, Sharshov K, Li Y, Wang W.	PeerJ	10.7717/peerj.20170	2025
Enzymology	Molecular structure of thermostable and zinc-ion-binding gamma-class carbonic anhydrases.	Wang W, Zhang Y, Wang L, Jing Q, Wang X, Xi X, Zhao X, Wang H.	Biometals	10.1007/s10534-019-00190-8	2019
Enzymology	Culturomics-Based Taxonomic Diversity of Bacterial Communities in the Hot Springs of Saudi Arabia.	Yasir M, Qureshi AK, Khan I, Bibi F, Rehan M, Khan SB, Azhar EI.	OMICS	10.1089/omi.2018.0176	2019
Metabolism	Prediction and functional analysis of prokaryote lysine acetylation site by incorporating six types of features into Chou's general PseAAC.	Chen G, Cao M, Yu J, Guo X, Shi S.	J Theor Biol	10.1016/j.jtbi.2018.10.047	2019
Metabolism	Proteome-wide identification of lysine propionylation in thermophilic and mesophilic bacteria: Geobacillus kaustophilus, Thermus thermophilus, Escherichia coli, Bacillus subtilis, and Rhodothermus marinus.	Okanishi H, Kim K, Masui R, Kuramitsu S.	Extremophiles	10.1007/s00792-016-0901-3	2017
	tRNA lysidinylation is essential for the minimal translation system in the Plasmodium falciparum apicoplast.	Elahi R, Prigge ST.	EMBO Rep	10.1038/s44319-025-00420-w	2025
Enzymology	Functional Studies of alpha-Riboside Activation by the alpha-Ribazole Kinase (CblS) from Geobacillus kaustophilus.	Mattes TA, Malalasekara L, Escalante-Semerena JC.	Biochemistry	10.1021/acs.biochem.1c00119	2021
	Steroid Metabolism in Thermophilic Actinobacterium Saccharopolyspora hirsuta VKM Ac-666^T.	Lobastova T, Fokina V, Tarlachkov S, Shutov A, Bragin E, Kazantsev A, Donova M.	Microorganisms	10.3390/microorganisms9122554	2021
Metabolism	CitA (citrate) and DcuS (C4-dicarboxylate) sensor kinases in thermophilic Geobacillus kaustophilus and Geobacillus thermodenitrificans.	Graf S, Broll C, Wissig J, Strecker A, Parowatkin M, Unden G.	Microbiology (Reading)	10.1099/mic.0.000171	2016
Enzymology	Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase.	Diamanti R, Srinivas V, Johansson AI, Nordstrom A, Griese JJ, Lebrette H, Hogbom M.	FEBS Lett	10.1002/1873-3468.14319	2022
Stress	Structure of the thermophilic l-Arabinose isomerase from Geobacillus kaustophilus reveals metal-mediated intersubunit interactions for activity and thermostability.	Choi JM, Lee YJ, Cao TP, Shin SM, Park MK, Lee HS, di Luccio E, Kim SB, Lee SJ, Lee SJ, Lee SH, Lee DW.	Arch Biochem Biophys	10.1016/j.abb.2016.02.033	2016
	Unlocking the function promiscuity of old yellow enzyme to catalyze asymmetric Morita-Baylis-Hillman reaction.	Wang L, Wu Y, Hu J, Yin D, Wei W, Wen J, Chen X, Gao C, Zhou Y, Liu J, Hu G, Li X, Wu J, Zhou Z, Liu L, Song W.	Nat Commun	10.1038/s41467-024-50141-2	2024
Enzymology	Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus.	Kanagawa M, Baba S, Watanabe Y, Nakagawa N, Ebihara A, Kuramitsu S, Yokoyama S, Sampei G, Kawai G.	J Biochem	10.1093/jb/mvv107	2016
Enzymology	Microbial Biodegradation of Paraffin Wax in Malaysian Crude Oil Mediated by Degradative Enzymes.	Adlan NA, Sabri S, Masomian M, Ali MSM, Rahman RNZRA.	Front Microbiol	10.3389/fmicb.2020.565608	2020
Enzymology	Stepwise Loop Insertion Strategy for Active Site Remodeling to Generate Novel Enzyme Functions.	Hoque MA, Zhang Y, Chen L, Yang G, Khatun MA, Chen H, Hao L, Feng Y.	ACS Chem Biol	10.1021/acschembio.7b00018	2017
Metabolism	Crystal structure of ATP-binding subunit of an ABC transporter from Geobacillus kaustophilus.	Manjula M, Pampa KJ, Kumar SM, Mukherjee S, Kunishima N, Rangappa KS, Lokanath NK.	Biochem Biophys Res Commun	10.1016/j.bbrc.2015.02.079	2015
	Exploring the Structural Insights of Thermostable Geobacillus esterases by Computational Characterization.	Surmeli Y, Durmus N, Sanli-Mohamed G.	ACS Omega	10.1021/acsomega.4c03818	2024
Metabolism	The Nitrile-Forming Enzyme 7-Cyano-7-Deazaguanine Synthase from Geobacillus kaustophilus: A Reverse Nitrilase?	Winkler M, Dokulil K, Weber H, Pavkov-Keller T, Wilding B.	Chembiochem	10.1002/cbic.201500335	2015
	Functional Characterization of the Putative POT from Clostridium perfringens.	Gharabli H, Rafiq M, Iqbal A, Yan R, Aduri NG, Sharma N, Prabhala BK, Mirza O.	Biology (Basel)	10.3390/biology12050651	2023
	Characterization of a thermophilic bacteriophage of Geobacillus kaustophilus.	Marks TJ, Hamilton PT.	Arch Virol	10.1007/s00705-014-2101-8	2014
Metabolism	Proteome-wide identification of lysine succinylation in thermophilic and mesophilic bacteria.	Okanishi H, Kim K, Fukui K, Yano T, Kuramitsu S, Masui R.	Biochim Biophys Acta Proteins Proteom	10.1016/j.bbapap.2016.11.009	2017
	RmmLII, a novel marine-derived N-acyl homoserine lactonase from Tritonibacter mobilis.	Shen Y, Liu D, Yue X, Wang D, Wang Z, Wang X, Liu G, Liu X, Cai X.	Front Microbiol	10.3389/fmicb.2025.1538873	2025
	Glucoselipid Biosurfactant Biosynthesis Operon of Rouxiella badensis DSM 100043^T: Screening, Identification, and Heterologous Expression in Escherichia coli.	Harahap AFP, Treinen C, Zyl LJV, Williams WT, Conrad J, Pfannstiel J, Klaiber I, Grether J, Hiller E, Vahidinasab M, Perino EHB, Lilge L, Burger A, Trindade M, Hausmann R.	Microorganisms	10.3390/microorganisms13071664	2025
Genetics	Mining Marine Metagenomes Revealed a Quorum-Quenching Lactonase with Improved Biochemical Properties That Inhibits the Food Spoilage Bacterium Pseudomonas fluorescens.	Haramati R, Dor S, Gurevich D, Levy D, Freund D, Rytwo G, Sharon I, Afriat-Jurnou L.	Appl Environ Microbiol	10.1128/aem.01680-21	2022
	Inherent conformational flexibility of F1-ATPase alpha-subunit.	Hahn-Herrera O, Salcedo G, Barril X, Garcia-Hernandez E.	Biochim Biophys Acta	10.1016/j.bbabio.2016.04.283	2016
Enzymology	Water-related environments: a multistep procedure to assess the diversity and enzymatic properties of cultivable bacteria.	Grivalsky T, Buckova M, Puskarova A, Krakova L, Pangallo D.	World J Microbiol Biotechnol	10.1007/s11274-015-1997-9	2016
	Protonation State of MnFe and FeFe Cofactors in a Ligand-Binding Oxidase Revealed by X-ray Absorption, Emission, and Vibrational Spectroscopy and QM/MM Calculations.	Kositzki R, Mebs S, Marx J, Griese JJ, Schuth N, Hogbom M, Schunemann V, Haumann M.	Inorg Chem	10.1021/acs.inorgchem.6b01752	2016
	Novel D-glutamate catabolic pathway in marine Proteobacteria and halophilic archaea.	Yu Y, Wang P, Cao HY, Teng ZJ, Zhu Y, Wang M, McMinn A, Chen Y, Xiang H, Zhang YZ, Chen XL, Zhang YQ.	ISME J	10.1038/s41396-023-01364-6	2023
Proteome	Proteomic analysis of acetylation in thermophilic Geobacillus kaustophilus.	Lee DW, Kim D, Lee YJ, Kim JA, Choi JY, Kang S, Pan JG.	Proteomics	10.1002/pmic.201200072	2013
Enzymology	Purification and Properties of Glycine Oxidase from Pseudomonas putida KT2440.	Equar MY, Tani Y, Mihara H.	J Nutr Sci Vitaminol (Tokyo)	10.3177/jnsv.61.506	2015
Metabolism	Enzymatic dynamic kinetic resolution of racemic N-formyl- and N-carbamoyl-amino acids using immobilized L-N-carbamoylase and N-succinyl-amino acid racemase.	Soriano-Maldonado P, Las Heras-Vazquez FJ, Clemente-Jimenez JM, Rodriguez-Vico F, Martinez-Rodriguez S.	Appl Microbiol Biotechnol	10.1007/s00253-014-5880-7	2015
	MSTL-Kace: Prediction of Prokaryotic Lysine Acetylation Sites Based on Multistage Transfer Learning Strategy.	Wang GA, Yan X, Li X, Liu Y, Xia J, Zhu X.	ACS Omega	10.1021/acsomega.3c07086	2023
Metabolism	Characterization of catalytic carboxylate triad in non-replicative DNA polymerase III (pol E) of Geobacillus kaustophilus HTA.	Sandalli C, Singh K, Modak MJ.	Cell Mol Biol (Noisy-le-grand)		2012
	Lipid and fatty acid profile of Geobacillus kaustophilus in response to abiotic stress.	Al-Khalaf RA, Al-Awadhi HA, Al-Beloshei N, Afzal M.	Can J Microbiol	10.1139/cjm-2012-0601	2013
	Insights into the Transport Cycle of LAT1 and Interaction with the Inhibitor JPH203.	Brunocilla C, Console L, Rovella F, Indiveri C.	Int J Mol Sci	10.3390/ijms24044042	2023
Metabolism	Biochemical and Mutational Characterization of N-Succinyl-Amino Acid Racemase from Geobacillus stearothermophilus CECT49.	Soriano-Maldonado P, Andujar-Sanchez M, Clemente-Jimenez JM, Rodriguez-Vico F, Las Heras-Vazquez FJ, Martinez-Rodriguez S.	Mol Biotechnol	10.1007/s12033-015-9839-4	2015
	Ncs2* mediates in vivo virulence of pathogenic yeast through sulphur modification of cytoplasmic transfer RNA.	Alings F, Scharmann K, Eggers C, Bottcher B, Sokolowski M, Shvetsova E, Sharma P, Roth J, Rashiti L, Glatt S, Brunke S, Leidel SA.	Nucleic Acids Res	10.1093/nar/gkad564	2023
Enzymology	Structural and functional characterization of a new thermophilic-like OYE from Aspergillus flavus.	Li N, Wang Y, Meng Y, Lv Y, Zhang S, Wei S, Ma P, Hu Y, Lin H.	Appl Microbiol Biotechnol	10.1007/s00253-023-12963-w	2024
	Preferential binding of ADP-bound mitochondrial HSP70 to the nucleotide exchange factor GRPEL1 over GRPEL2.	Manjunath P, Stojkovic G, Euro L, Konovalova S, Wanrooij S, Koski K, Tyynismaa H.	Protein Sci	10.1002/pro.5190	2024
	Sequence analysis and spatiotemporal developmental distribution of the Cat-1-type transporter slc7a1a in zebrafish (Danio rerio).	Ellingsen S, Narawane S, Fjose A, Verri T, Ronnestad I.	Fish Physiol Biochem	10.1007/s10695-020-00873-x	2020
Metabolism	A novel method for transforming the thermophilic bacterium Geobacillus kaustophilus.	Miyano M, Tanaka K, Ishikawa S, Mori K, Miguel-Arribas A, Meijer WJJ, Yoshida KI.	Microb Cell Fact	10.1186/s12934-018-0969-9	2018
	Sequence-assignment validation in protein crystal structure models with checkMySequence.	Chojnowski G.	Acta Crystallogr D Struct Biol	10.1107/s2059798323003765	2023
Transcriptome	Insight into Different Stages of Steroid Degradation in Thermophilic Saccharopolyspora hirsuta VKM Ac-666^T Strain.	Lobastova T, Fokina V, Pozdnyakova-Filatova I, Tarlachkov S, Shutov A, Donova M.	Int J Mol Sci	10.3390/ijms232416174	2022
	Reducing the virulence of Pseudomonas aeruginosa by using multiple quorum-quenching enzymes.	Khatun MA, Hoque MA, Koffas M, Feng Y.	J Ind Microbiol Biotechnol	10.1093/jimb/kuad028	2023
	Structural insight into G-protein chaperone-mediated maturation of a bacterial adenosylcobalamin-dependent mutase.	Vaccaro FA, Faber DA, Andree GA, Born DA, Kang G, Fonseca DR, Jost M, Drennan CL.	J Biol Chem	10.1016/j.jbc.2023.105109	2023
	Presence of periodontal pathogenic bacteria in blood of patients with coronary artery disease.	Corredor Z, Suarez-Molina A, Fong C, Cifuentes-C L, Guauque-Olarte S.	Sci Rep	10.1038/s41598-022-05337-1	2022
Metabolism	Structures and reaction mechanisms of the two related enzymes, PurN and PurU.	Sampei G, Kanagawa M, Baba S, Shimasaki T, Taka H, Mitsui S, Fujiwara S, Yanagida Y, Kusano M, Suzuki S, Terao K, Kawai H, Fukai Y, Nakagawa N, Ebihara A, Kuramitsu S, Yokoyama S, Kawai G.	J Biochem	10.1093/jb/mvt090	2013
	Orphan lysosomal solute carrier MFSD1 facilitates highly selective dipeptide transport.	Boytsov D, Madej GM, Horn G, Blaha N, Kocher T, Sitte HH, Siekhaus D, Ziegler C, Sandtner W, Roblek M.	Proc Natl Acad Sci U S A	10.1073/pnas.2319686121	2024
	Lineage-specific insertions in T-box riboswitches modulate antibiotic binding and action.	Giarimoglou N, Kouvela A, Patsi I, Zhang J, Stamatopoulou V, Stathopoulos C.	Nucleic Acids Res	10.1093/nar/gkac359	2022
Metabolism	Modification of progesterone and testosterone by a food-borne thermophile Geobacillus kaustophilus.	Al-Tamimi S, Al-Awadi S, Oommen S, Afzal M.	Int J Food Sci Nutr	10.3109/09637480903292619	2010
	Chromophore carbonyl twisting in fluorescent biosensors encodes direct readout of protein conformations with multicolor switching.	Allert MJ, Kumar S, Wang Y, Beese LS, Hellinga HW.	Commun Chem	10.1038/s42004-023-00982-7	2023
Enzymology	Pre-Steady-State Kinetic Characterization of an Antibiotic-Resistant Mutant of Staphylococcus aureus DNA Polymerase PolC.	Nelson-Rigg R, Fagan SP, Jaremko WJ, Pata JD.	Antimicrob Agents Chemother	10.1128/aac.01571-22	2023
	New insights into the structure and function of the complex between the Escherichia coli Hsp70, DnaK, and its nucleotide-exchange factor, GrpE.	Rossi MA, Pozhidaeva AK, Clerico EM, Petridis C, Gierasch LM.	J Biol Chem	10.1016/j.jbc.2023.105574	2024
Enzymology	Molecular interplay between the replicative helicase DnaC and its loader protein DnaI from Geobacillus kaustophilus.	Tsai KL, Lo YH, Sun YJ, Hsiao CD.	J Mol Biol	10.1016/j.jmb.2009.09.002	2009
Enzymology	Crystallization, characterization and preliminary X-ray crystallographic analysis of GK2848, a putative carbonic anhydrase of Geobacillus kaustophilus.	Ragunathan P, Raghunath G, Kuramitsu S, Yokoyama S, Kumarevel T, Ponnuraj K.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309112051913	2013
	Cryo-EM structures of DNA-free and DNA-bound BsaXI: architecture of a Type IIB restriction-modification enzyme.	Shen BW, Heiter D, Yang W, Xu SY, Stoddard BL.	Nucleic Acids Res	10.1093/nar/gkaf291	2025
Genetics	Genome sequencing and annotation of Geobacillus sp. 1017, a hydrocarbon-oxidizing thermophilic bacterium isolated from a heavy oil reservoir (China).	Kadnikov VV, Mardanov AV, Poltaraus AB, Sokolova DS, Semenova EM, Ravin NV, Tourova TP, Nazina TN.	Genom Data	10.1016/j.gdata.2016.12.011	2017
	Harnessing the acceptor substrate promiscuity of Clostridium botulinum Maf glycosyltransferase to glyco-engineer mini-flagellin protein chimeras.	Sunsunwal S, Khairnar A, Subramanian S, Ramya TNC.	Commun Biol	10.1038/s42003-024-06736-y	2024
	Superior protein thermophilicity prediction with protein language model embeddings.	Haselbeck F, John M, Zhang Y, Pirnay J, Fuenzalida-Werner JP, Costa RD, Grimm DG.	NAR Genom Bioinform	10.1093/nargab/lqad087	2023
	Phage tRNAs evade tRNA-targeting host defenses through anticodon loop mutations.	van den Berg DF, van der Steen BA, Costa AR, Brouns SJJ.	Elife	10.7554/elife.85183	2023
Enzymology	An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA.	Asano R, Ishikawa H, Nakane S, Nakagawa N, Kuramitsu S, Masui R.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444910052479	2011
	Loss in the Antibacterial Ability of a PyrR Gene Regulating Pyrimidine Biosynthesis after Using CRISPR/Cas9-Mediated Knockout for Metabolic Engineering in Lactobacillus casei.	Chen S, He X, Qin Z, Li G, Wang W, Nai Z, Tian Y, Liu D, Jiang X.	Microorganisms	10.3390/microorganisms11102371	2023
	Purification, crystallization and preliminary X-ray diffraction studies of the ATP-binding subunit of an ABC transporter from Geobacillus kaustophilus.	Manjula M, Pampa KJ, Madan Kumar S, Kunishima N, Lokanath NK.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309112037918	2012
Genetics	Diverse Mechanisms of Helicase Loading during DNA Replication Initiation in Bacteria.	Blaine HC, Simmons LA, Stallings CL.	J Bacteriol	10.1128/jb.00487-22	2023
	Structure of the hypothetical DUF1811-family protein GK0453 from Geobacillus kaustophilus HTA426.	Padmanabhan B, Nakamura Y, Antonyuk SV, Strange RW, Hasnain SS, Yokoyama S, Bessho Y.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309113003369	2013
	Structural idiosyncrasies of glycyl T-box riboswitches among pathogenic bacteria.	Giarimoglou N, Kouvela A, Zhang J, Stamatopoulou V, Stathopoulos C.	RNA	10.1261/rna.080071.124	2024
Enzymology	Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria.	Sampei G, Baba S, Kanagawa M, Yanai H, Ishii T, Kawai H, Fukai Y, Ebihara A, Nakagawa N, Kawai G.	J Biochem	10.1093/jb/mvq088	2010
Enzymology	Crystallization and preliminary X-ray crystallographic analysis of L-arabinose isomerase from thermophilic Geobacillus kaustophilus.	Cao TP, Choi JM, Lee SJ, Lee YJ, Lee SK, Jun Y, Lee DW, Lee SH.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x13033724	2014
Enzymology	Isolation and identification of lipase producing thermophilic Geobacillus sp. SBS-4S: cloning and characterization of the lipase.	Tayyab M, Rashid N, Akhtar M.	J Biosci Bioeng	10.1016/j.jbiosc.2010.11.015	2011
Metabolism	Structural and Functional Characterization of New SsoPox Variant Points to the Dimer Interface as a Driver for the Increase in Promiscuous Paraoxonase Activity.	Suzumoto Y, Dim O, Roviello GN, Roviello GN, Worek F, Sussman JL, Manco G.	Int J Mol Sci	10.3390/ijms21051683	2020
Metabolism	Isolation and characterization of a potential paraffin-wax degrading thermophilic bacterial strain Geobacillus kaustophilus TERI NSM for application in oil wells with paraffin deposition problems.	Sood N, Lal B.	Chemosphere	10.1016/j.chemosphere.2007.08.071	2008
	Cloning and characterization of flagellin genes and identification of flagellin glycosylation from thermophilic Bacillus species.	Hayakawa J, Kondoh Y, Ishizuka M.	Biosci Biotechnol Biochem	10.1271/bbb.90092	2009
	Unique plasmids generated via pUC replicon mutagenesis in an error-prone thermophile derived from Geobacillus kaustophilus HTA426.	Kobayashi J, Tanabiki M, Doi S, Kondo A, Ohshiro T, Suzuki H.	Appl Environ Microbiol	10.1128/aem.01574-15	2015
Metabolism	Structural Insights into the Substrate Transport Mechanisms in GTR Transporters through Ensemble Docking.	Pena-Varas C, Kanstrup C, Vergara-Jaque A, Gonzalez-Avendano M, Crocoll C, Mirza O, Dreyer I, Nour-Eldin H, Ramirez D.	Int J Mol Sci	10.3390/ijms23031595	2022
	Proton coupling and the multiscale kinetic mechanism of a peptide transporter.	Li C, Yue Z, Newstead S, Voth GA.	Biophys J	10.1016/j.bpj.2022.05.029	2022
Phylogeny	Emended descriptions of Geobacillus thermoleovorans and Geobacillus thermocatenulatus.	Dinsdale AE, Halket G, Coorevits A, Van Landschoot A, Busse HJ, De Vos P, Logan NA.	Int J Syst Evol Microbiol	10.1099/ijs.0.025445-0	2011
	Characterization of Cyclophilin from Thaumarchaeota Nitrosopumilus maritimus: Implications on the Diversity of Chaperone-like Activity in the Archaeal Domain.	Kaushik V, Anchal, Goel M.	ACS Omega	10.1021/acsomega.1c03216	2022
	Functional Characterization and Structural Modeling of a Novel Glycine Oxidase from Variovorax paradoxus Iso1.	Lo KY, Tsai YF, Hsu CH, Lee CY.	Appl Environ Microbiol	10.1128/aem.01077-22	2022
Enzymology	1H, 13C, and 15N backbone and side chain resonance assignments of thermophilic Geobacillus kaustophilus cyclophilin-A.	Holliday MJ, Zhang F, Isern NG, Armstrong GS, Eisenmesser EZ.	Biomol NMR Assign	10.1007/s12104-012-9445-3	2014
Enzymology	Crystallization and preliminary crystallographic analysis of the phosphotriesterase-like lactonase from Geobacillus kaustophilus.	Zheng B, Yu S, Zhang Y, Feng Y, Lou Z.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309111018136	2011
Enzymology	Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of GK0767, the copper-containing nitrite reductase from Geobacillus kaustophilus.	Fukuda Y, Tamada T, Takami H, Suzuki S, Inoue T, Nojiri M.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309111013297	2011
Metabolism	Salmonella enterica synthesizes 5,6-dimethylbenzimidazolyl-(DMB)-alpha-riboside. Why some Firmicutes do not require the canonical DMB activation system to synthesize adenosylcobalamin.	Mattes TA, Escalante-Semerena JC.	Mol Microbiol	10.1111/mmi.13555	2017
	Housekeeping recA gene interrupted by group II intron in the thermophilic Geobacillus kaustophilus.	Chee GJ, Takami H.	Gene	10.1016/j.gene.2005.08.017	2005
	Adaptation to Overflow Metabolism by Mutations That Impair tRNA Modification in Experimentally Evolved Bacteria.	Muraski MJ, Nilsson EM, Fritz MJ, Richardson AR, Alexander RW, Cooper VS.	mBio	10.1128/mbio.00287-23	2023
Enzymology	Structure of the apo decarbamylated form of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis.	Tamura H, Saito Y, Ashida H, Kai Y, Inoue T, Yokota A, Matsumura H.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444909022422	2009
Enzymology	Structure and conformational stability of a tetrameric thermostable N-succinylamino acid racemase.	Pozo-Dengra J, Martinez-Rodriguez S, Contreras LM, Prieto J, Andujar-Sanchez M, Clemente-Jimenez JM, Las Heras-Vazquez FJ, Rodriguez-Vico F, Neira JL.	Biopolymers	10.1002/bip.21226	2009
Metabolism	Mechanistic diversity in the RuBisCO superfamily: the "enolase" in the methionine salvage pathway in Geobacillus kaustophilus.	Imker HJ, Fedorov AA, Fedorov EV, Almo SC, Gerlt JA.	Biochemistry	10.1021/bi7000483	2007
Enzymology	Malonyl-proteome profiles of Staphylococcus aureus reveal lysine malonylation modification in enzymes involved in energy metabolism.	Shi Y, Zhu J, Xu Y, Tang X, Yang Z, Huang A.	Proteome Sci	10.1186/s12953-020-00169-1	2021
Metabolism	Novel Escherichia coli active site dnaE alleles with altered base and sugar selectivity.	Vaisman A, Lazowski K, Reijns MAM, Walsh E, McDonald JP, Moreno KC, Quiros DR, Schmidt M, Kranz H, Yang W, Makiela-Dzbenska K, Woodgate R.	Mol Microbiol	10.1111/mmi.14779	2021
	Potent Inhibition of Macropinocytosis by Niclosamide in Cancer Cells: A Novel Mechanism for the Anticancer Efficacy for the Antihelminthic.	Sennoune SR, Nandagopal GD, Ramachandran S, Mathew M, Sivaprakasam S, Jaramillo-Martinez V, Bhutia YD, Ganapathy V.	Cancers (Basel)	10.3390/cancers15030759	2023
Genetics	Comparative Genomics Analyses Reveal the Differences between B. longum subsp. infantis and B. longum subsp. longum in Carbohydrate Utilisation, CRISPR-Cas Systems and Bacteriocin Operons.	Li M, Zhou X, Stanton C, Ross RP, Zhao J, Zhang H, Yang B, Chen W.	Microorganisms	10.3390/microorganisms9081713	2021
Metabolism	Phosphinothricin Acetyltransferases Identified Using In Vivo, In Vitro, and Bioinformatic Analyses.	VanDrisse CM, Hentchel KL, Escalante-Semerena JC.	Appl Environ Microbiol	10.1128/aem.02604-16	2016
Metabolism	Characterization of growth-supporting factors produced by Geobacillus toebii for the commensal thermophile Symbiobacterium toebii.	Kim JJ, Masui R, Kuramitsu S, Seo JH, Kim K, Sung MH.	J Microbiol Biotechnol		2008
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	Comparative Modeling and Analysis of Extremophilic D-Ala-D-Ala Carboxypeptidases.	Diessner EM, Takahashi GR, Martin RW, Butts CT.	Biomolecules	10.3390/biom13020328	2023
Metabolism	Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions.	Li S, Su Z, Lehmann J, Stamatopoulou V, Giarimoglou N, Henderson FE, Fan L, Pintilie GD, Zhang K, Chen M, Ludtke SJ, Wang YX, Stathopoulos C, Chiu W, Zhang J.	Nat Struct Mol Biol	10.1038/s41594-019-0326-7	2019
	The binding mode of orphan glycyl-tRNA synthetase with tRNA supports the synthetase classification and reveals large domain movements.	Han L, Luo Z, Ju Y, Chen B, Zou T, Wang J, Xu J, Gu Q, Yang XL, Schimmel P, Zhou H.	Sci Adv	10.1126/sciadv.adf1027	2023
	Identification of a New Heavy-Metal-Resistant Strain of Geobacillus stearothermophilus Isolated from a Hydrothermally Active Volcanic Area in Southern Italy.	Puopolo R, Gallo G, Mormone A, Limauro D, Contursi P, Piochi M, Bartolucci S, Fiorentino G.	Int J Environ Res Public Health	10.3390/ijerph17082678	2020
Metabolism	Evolution of enzymatic activities in the enolase superfamily: N-succinylamino acid racemase and a new pathway for the irreversible conversion of D- to L-amino acids.	Sakai A, Xiang DF, Xu C, Song L, Yew WS, Raushel FM, Gerlt JA.	Biochemistry	10.1021/bi060230b	2006
Enzymology	Structure-guided steric hindrance engineering of Bacillus badius phenylalanine dehydrogenase for efficient L-homophenylalanine synthesis.	Wu T, Mu X, Xue Y, Xu Y, Nie Y.	Biotechnol Biofuels	10.1186/s13068-021-02055-0	2021
Metabolism	Bacterial Lipoproteins Shift Cellular Metabolism to Glycolysis in Macrophages Causing Bone Erosion.	Nguyen MT, Hu Z, Mohammad M, Schottler H, Niemann S, Schultz M, Barczyk-Kahlert K, Jin T, Hayen H, Herrmann M.	Microbiol Spectr	10.1128/spectrum.04293-22	2023
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	N-acylhomoserine lactonase-based hybrid nanoflowers: a novel and practical strategy to control plant bacterial diseases.	Chen Y, Liu P, Wu J, Yan W, Xie S, Sun X, Ye BC, Chu X.	J Nanobiotechnology	10.1186/s12951-022-01557-9	2022
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Enzymology	Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of DHNA synthetase from Geobacillus kaustophilus.	Kanaujia SP, Ranjani CV, Jeyakanthan J, Baba S, Kuroishi C, Ebihara A, Shinkai A, Kuramitsu S, Shiro Y, Sekar K, Yokoyama S.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309106056521	2007
Enzymology	Characterization of a bifunctional aminoacylase/carboxypeptidase from radioresistant bacterium Deinococcus radiodurans R1.	Lin LL, Chen MH, Chien HC, Kan SC, Chen CC, Hu HY, Hsu WH.	J Biotechnol	10.1016/j.jbiotec.2006.10.011	2007
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	Describing inhibitor specificity for the amino acid transporter LAT1 from metainference simulations.	Hutchinson K, Silva DB, Bohlke J, Clausen C, Thomas AA, Bonomi M, Schlessinger A.	Biophys J	10.1016/j.bpj.2022.11.001	2022
Metabolism	RNA regulators responding to ribosomal protein S15 are frequent in sequence space.	Slinger BL, Meyer MM.	Nucleic Acids Res	10.1093/nar/gkw754	2016
	Exploring a Highly D-Galactose Specific L-Arabinose Isomerase From Bifidobacterium adolescentis for D-Tagatose Production.	Zhang G, An Y, Parvez A, Zabed HM, Yun J, Qi X.	Front Bioeng Biotechnol	10.3389/fbioe.2020.00377	2020
	Influence of Redox Imbalances on the Transposition of Insertion Sequences in Deinococcus geothermalis.	Ye Q, Lee C, Shin E, Lee SJ.	Antioxidants (Basel)	10.3390/antiox10101623	2021
Genetics	New Platform for Screening Genetic Libraries at Elevated Temperatures: Biological and Genomic Information and Genetic Tools of Geobacillus thermodenitrificans K1041.	Koyama K, Mikawa Y, Nakagawa S, Kurashiki R, Ohshiro T, Suzuki H.	Appl Environ Microbiol	10.1128/aem.01051-22	2022
	Bacterial and Fungal Adaptations in Cecum and Distal Colon of Piglets Fed With Dairy-Based Milk Formula in Comparison With Human Milk.	Elolimy A, Rosa F, Tripp P, Zeineldin M, Bowlin AK, Randolph C, Robeson MS, Yeruva L.	Front Microbiol	10.3389/fmicb.2022.801854	2022
Enzymology	A New Thermophilic Ene-Reductase from the Filamentous Anoxygenic Phototrophic Bacterium Chloroflexus aggregans.	Robescu MS, Niero M, Loprete G, Cendron L, Bergantino E.	Microorganisms	10.3390/microorganisms9050953	2021
Pathogenicity	Anti-virulent Disruption of Pathogenic Biofilms using Engineered Quorum-quenching Lactonases.	Tay SB, Chow JY, Go MK, Yew WS.	J Vis Exp	10.3791/53243	2016
	Allosteric Inter-Domain Contacts in Bacterial Hsp70 Are Located in Regions That Avoid Insertion and Deletion Events.	Gala M, Pristas P, Zoldak G.	Int J Mol Sci	10.3390/ijms23052788	2022
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	Structural Dynamics and Perspectives of Vitamin B6 Biosynthesis Enzymes in Plasmodium: Advances and Open Questions.	Barra ALC, Ullah N, Morao LG, Wrenger C, Betzel C, Nascimento AS.	Front Cell Infect Microbiol	10.3389/fcimb.2021.688380	2021
	Structure of the M. tuberculosis DnaK-GrpE complex reveals how key DnaK roles are controlled.	Xiao X, Fay A, Molina PS, Kovach A, Glickman MS, Li H.	Nat Commun	10.1038/s41467-024-44933-9	2024
Genetics	Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench.	Takami H, Nishi S, Lu J, Shimamura S, Takaki Y.	Extremophiles	10.1007/s00792-004-0394-3	2004
	Development of a pyrF-based counterselectable system for targeted gene deletion in Streptomyces rimosus.	Yang Y, Sun Q, Liu Y, Yin H, Yang W, Wang Y, Liu Y, Li Y, Pang S, Liu W, Zhang Q, Yuan F, Qiu S, Li J, Wang X, Fan K, Wang W, Li Z, Yin S.	J Zhejiang Univ Sci B	10.1631/jzus.b2000606	2021
Metabolism	Second-Shell Amino Acid R266 Helps Determine N-Succinylamino Acid Racemase Reaction Specificity in Promiscuous N-Succinylamino Acid Racemase/o-Succinylbenzoate Synthase Enzymes.	Truong DP, Rousseau S, Machala BW, Huddleston JP, Zhu M, Hull KG, Romo D, Raushel FM, Sacchettini JC, Glasner ME.	Biochemistry	10.1021/acs.biochem.1c00627	2021
Metabolism	Inhibition of extracellular proteases improves the production of a xylanase in Parageobacillus thermoglucosidasius.	Holland ATN, Danson MJ, Bolhuis A.	BMC Biotechnol	10.1186/s12896-019-0511-0	2019
Enzymology	Copper nitrite reductase from Sinorhizobium meliloti 2011: Crystal structure and interaction with the physiological versus a nonmetabolically related cupredoxin-like mediator.	Ramirez CS, Tolmie C, Opperman DJ, Gonzalez PJ, Rivas MG, Brondino CD, Ferroni FM.	Protein Sci	10.1002/pro.4195	2021
	Regulation of Ribosomal Protein Synthesis in Mycobacteria: The Autogenous Control of rpsO.	Aseev LV, Koledinskaya LS, Bychenko OS, Boni IV.	Int J Mol Sci	10.3390/ijms22189679	2021
Genetics	Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates.	Tirumalai MR, Stepanov VG, Wunsche A, Montazari S, Gonzalez RO, Venkateswaran K, Fox GE.	BMC Microbiol	10.1186/s12866-018-1191-y	2018
Metabolism	The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron.	Grave K, Griese JJ, Berggren G, Bennett MD, Hogbom M.	J Biol Inorg Chem	10.1007/s00775-020-01782-3	2020
Enzymology	Pulsed Multifrequency Electron Paramagnetic Resonance Spectroscopy Reveals Key Branch Points for One- vs Two-Electron Reactivity in Mn/Fe Proteins.	Kisgeropoulos EC, Gan YJ, Greer SM, Hazel JM, Shafaat HS.	J Am Chem Soc	10.1021/jacs.1c13738	2022
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	Structural insight into the DNA-binding mode of the primosomal proteins PriA, PriB, and DnaT.	Huang YH, Huang CY.	Biomed Res Int	10.1155/2014/195162	2014
	A scaffolded approach to unearth potential antibacterial components from epicarp of Malaysian Nephelium lappaceum L.	Asghar A, Tan YC, Zahoor M, Zainal Abidin SA, Yow YY, Khan E, Lahiri C.	Sci Rep	10.1038/s41598-021-92622-0	2021
Metabolism	Engineering acyl-homoserine lactone-interfering enzymes toward bacterial control.	Billot R, Plener L, Jacquet P, Elias M, Chabriere E, Daude D.	J Biol Chem	10.1074/jbc.rev120.013531	2020
	A Cassette Containing Thiostrepton, Gentamicin Resistance Genes, and dif sequences Is Effective in Construction of Recombinant Mycobacteria.	Mugweru J, Makafe G, Cao Y, Zhang Y, Wang B, Huang S, Njire M, Chhotaray C, Tan Y, Li X, Liu J, Tan S, Deng J, Zhang T.	Front Microbiol	10.3389/fmicb.2017.00468	2017
Phylogeny	Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers.	Helen D, Kim H, Tytgat B, Anne W.	BMC Genomics	10.1186/s12864-016-2465-0	2016
Metabolism	Ether cross-link formation in the R2-like ligand-binding oxidase.	Griese JJ, Branca RMM, Srinivas V, Hogbom M.	J Biol Inorg Chem	10.1007/s00775-018-1583-3	2018
	Coarse-grain simulations on NMR conformational ensembles highlight functional residues in proteins.	Sacquin-Mora S.	J R Soc Interface	10.1098/rsif.2019.0075	2019
Proteome	The Hsp70-Chaperone Machines in Bacteria.	Mayer MP.	Front Mol Biosci	10.3389/fmolb.2021.694012	2021
	Structure and Dynamics of GeoCyp: A Thermophilic Cyclophilin with a Novel Substrate Binding Mechanism That Functions Efficiently at Low Temperatures.	Holliday MJ, Camilloni C, Armstrong GS, Isern NG, Zhang F, Vendruscolo M, Eisenmesser EZ.	Biochemistry	10.1021/acs.biochem.5b00263	2015
	Modulation of Quorum Sensing and Biofilms in Less Investigated Gram-Negative ESKAPE Pathogens.	Lazar V, Holban AM, Curutiu C, Chifiriuc MC.	Front Microbiol	10.3389/fmicb.2021.676510	2021
	Transformable facultative thermophile Geobacillus stearothermophilus NUB3621 as a host strain for metabolic engineering.	Blanchard K, Robic S, Matsumura I.	Appl Microbiol Biotechnol	10.1007/s00253-014-5746-z	2014
	Characterization of flavonol inhibition of DnaB helicase: real-time monitoring, structural modeling, and proposed mechanism.	Lin HH, Huang CY.	J Biomed Biotechnol	10.1155/2012/735368	2012
	Tripeptide binding in a proton-dependent oligopeptide transporter.	Martinez Molledo M, Quistgaard EM, Low C.	FEBS Lett	10.1002/1873-3468.13246	2018
	Analysis of anoxybacillus genomes from the aspects of lifestyle adaptations, prophage diversity, and carbohydrate metabolism.	Goh KM, Gan HM, Chan KG, Chan GF, Shahar S, Chong CS, Kahar UM, Chai KP.	PLoS One	10.1371/journal.pone.0090549	2014
	tRNA methylation resolves codon usage bias at the limit of cell viability.	Masuda I, Yamaki Y, Detroja R, Tagore S, Moore H, Maharjan S, Nakano Y, Christian T, Matsubara R, Lowe TM, Frenkel-Morgenstern M, Hou YM.	Cell Rep	10.1016/j.celrep.2022.111539	2022
Genetics	Comparative genomics analysis of the companion mechanisms of Bacillus thuringiensis Bc601 and Bacillus endophyticus Hbe603 in bacterial consortium.	Jia N, Ding MZ, Gao F, Yuan YJ.	Sci Rep	10.1038/srep28794	2016
Metabolism	Roles of RubisCO and the RubisCO-like protein in 5-methylthioadenosine metabolism in the Nonsulfur purple bacterium Rhodospirillum rubrum.	Singh J, Tabita FR.	J Bacteriol	10.1128/jb.01442-09	2010
Enzymology	Driving Protein Conformational Changes with Light: Photoinduced Structural Rearrangement in a Heterobimetallic Oxidase.	Maugeri PT, Griese JJ, Branca RM, Miller EK, Smith ZR, Eirich J, Hogbom M, Shafaat HS.	J Am Chem Soc	10.1021/jacs.7b11966	2018
Biotechnology	Building better polymerases: Engineering the replication of expanded genetic alphabets.	Ouaray Z, Benner SA, Georgiadis MM, Richards NGJ.	J Biol Chem	10.1074/jbc.rev120.013745	2020
Genetics	Bacterial RNA motif in the 5' UTR of rpsF interacts with an S6:S18 complex.	Fu Y, Deiorio-Haggar K, Soo MW, Meyer MM.	RNA	10.1261/rna.041285.113	2014
Metabolism	Active-site loop variations adjust activity and selectivity of the cumene dioxygenase.	Heinemann PM, Armbruster D, Hauer B.	Nat Commun	10.1038/s41467-021-21328-8	2021
	Isolation and Characterization of a Novel Cold-Adapted Esterase, MtEst45, from Microbulbifer thermotolerans DAU221.	Lee YS.	Front Microbiol	10.3389/fmicb.2016.00218	2016
Metabolism	A polar filter in DNA polymerases prevents ribonucleotide incorporation.	Johnson MK, Kottur J, Nair DT.	Nucleic Acids Res	10.1093/nar/gkz792	2019
Metabolism	Protection of the Queuosine Biosynthesis Enzyme QueF from Irreversible Oxidation by a Conserved Intramolecular Disulfide.	Mohammad A, Bon Ramos A, Lee BW, Cohen SW, Kiani MK, Iwata-Reuyl D, Stec B, Swairjo MA.	Biomolecules	10.3390/biom7010030	2017
	Chemical Modulation of the Human Oligopeptide Transporter 1, hPepT1.	Colas C, Masuda M, Sugio K, Miyauchi S, Hu Y, Smith DE, Schlessinger A.	Mol Pharm	10.1021/acs.molpharmaceut.7b00775	2017
Enzymology	A novel alkaliphilic bacillus esterase belongs to the 13(th) bacterial lipolytic enzyme family.	Rao L, Xue Y, Zheng Y, Lu JR, Ma Y.	PLoS One	10.1371/journal.pone.0060645	2013
Metabolism	Proton Control of Transitions in an Amino Acid Transporter.	Wu Z, Alibay I, Newstead S, Biggin PC.	Biophys J	10.1016/j.bpj.2019.07.056	2019
Metabolism	YjbH Requires Its Thioredoxin Active Motif for the Nitrosative Stress Response, Cell-to-Cell Spread, and Protein-Protein Interactions in Listeria monocytogenes.	Ruhland BR, Reniere ML.	J Bacteriol	10.1128/jb.00099-20	2020
	A group IIC-type intron interrupts the rRNA methylase gene of Geobacillus stearothermophilus strain 10.	Moretz SE, Lampson BC.	J Bacteriol	10.1128/jb.00633-10	2010
Metabolism	Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15.	Pei S, Slinger BL, Meyer MM.	BMC Bioinformatics	10.1186/s12859-017-1704-y	2017
Metabolism	Mutations altering the interplay between GkDnaC helicase and DNA reveal an insight into helicase unwinding.	Lo YH, Liu SW, Sun YJ, Li HW, Hsiao CD.	PLoS One	10.1371/journal.pone.0029016	2011
Metabolism	Assembly of a heterodinuclear Mn/Fe cofactor is coupled to tyrosine-valine ether cross-link formation in the R2-like ligand-binding oxidase.	Griese JJ, Kositzki R, Haumann M, Hogbom M.	J Biol Inorg Chem	10.1007/s00775-019-01639-4	2019
Metabolism	Acetyl coenzyme A synthetase is acetylated on multiple lysine residues by a protein acetyltransferase with a single Gcn5-type N-acetyltransferase (GNAT) domain in Saccharopolyspora erythraea.	You D, Yao LL, Huang D, Escalante-Semerena JC, Ye BC.	J Bacteriol	10.1128/jb.01961-14	2014
Pathogenicity	Heavy Metal Induced Antibiotic Resistance in Bacterium LSJC7.	Chen S, Li X, Li X, Sun G, Zhang Y, Su J, Ye J.	Int J Mol Sci	10.3390/ijms161023390	2015
Metabolism	Regulatory Aspects of the Vacuolar CAT2 Arginine Transporter of S. lycopersicum: Role of Osmotic Pressure and Cations.	Cosco J, Regina TMR, Scalise M, Galluccio M, Indiveri C.	Int J Mol Sci	10.3390/ijms20040906	2019
Metabolism	Systematic analysis of the lysine acetylome in Fusarium graminearum.	Zhou S, Yang Q, Yin C, Liu L, Liang W.	BMC Genomics	10.1186/s12864-016-3361-3	2016
	Solution NMR determination of hydrogen bonding and base pairing between the glyQS T box riboswitch Specifier domain and the anticodon loop of tRNA(Gly).	Chang AT, Nikonowicz EP.	FEBS Lett	10.1016/j.febslet.2013.09.003	2013
	The emerging tumor microbe microenvironment: From delineation to multidisciplinary approach-based interventions.	Fu Y, Li J, Cai W, Huang Y, Liu X, Ma Z, Tang Z, Bian X, Zheng J, Jiang J, Li C.	Acta Pharm Sin B	10.1016/j.apsb.2023.11.018	2024
Metabolism	Structural evidence of a productive active site architecture for an evolved quorum-quenching GKL lactonase.	Xue B, Chow JY, Baldansuren A, Yap LL, Gan YH, Dikanov SA, Robinson RC, Yew WS.	Biochemistry	10.1021/bi4000904	2013
Enzymology	Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of the putative SAICAR synthetase (PH0239) from Pyrococcus horikoshii OT3.	Manjunath K, Jeyakanthan J, Nakagawa N, Shinkai A, Yoshimura M, Kuramitsu S, Yokoyama S, Sekar K.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309109052026	2010
Enzymology	Purification, crystallization and X-ray diffraction analysis of a novel ring-cleaving enzyme (BoxC(C)) from Burkholderia xenovorans LB400.	Bains J, Boulanger MJ.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309108010919	2008
	Helical unwinding and side-chain unlocking unravel the outward open conformation of the melibiose transporter.	Wang LY, Ravi VM, Leblanc G, Padros E, Cladera J, Peralvarez-Marin A.	Sci Rep	10.1038/srep33776	2016
Phylogeny	Assessment of Microbial Richness in Pelagic Sediment of Andaman Sea by Bacterial Tag Encoded FLX Titanium Amplicon Pyrosequencing (bTEFAP).	Sundarakrishnan B, Pushpanathan M, Jayashree S, Rajendhran J, Sakthivel N, Jayachandran S, Gunasekaran P.	Indian J Microbiol	10.1007/s12088-012-0310-y	2012
Metabolism	Structure determination of a major facilitator peptide transporter: Inward facing PepTSt from Streptococcus thermophilus crystallized in space group P3121.	Quistgaard EM, Martinez Molledo M, Low C.	PLoS One	10.1371/journal.pone.0173126	2017
Metabolism	Comparison of Alicyclobacillus acidocaldarius o-Succinylbenzoate Synthase to Its Promiscuous N-Succinylamino Acid Racemase/ o-Succinylbenzoate Synthase Relatives.	Odokonyero D, McMillan AW, Ramagopal UA, Toro R, Truong DP, Zhu M, Lopez MS, Somiari B, Herman M, Aziz A, Bonanno JB, Hull KG, Burley SK, Romo D, Almo SC, Glasner ME.	Biochemistry	10.1021/acs.biochem.8b00088	2018
Metabolism	Redox regulation of GRPEL2 nucleotide exchange factor for mitochondrial HSP70 chaperone.	Konovalova S, Liu X, Manjunath P, Baral S, Neupane N, Hilander T, Yang Y, Balboa D, Terzioglu M, Euro L, Varjosalo M, Tyynismaa H.	Redox Biol	10.1016/j.redox.2018.07.024	2018
Metabolism	MtnBD is a multifunctional fusion enzyme in the methionine salvage pathway of Tetrahymena thermophila.	Nakano T, Ohki I, Yokota A, Ashida H.	PLoS One	10.1371/journal.pone.0067385	2013
Metabolism	Crystal structure of the vicilin from Solanum melongena reveals existence of different anionic ligands in structurally similar pockets.	Jain A, Kumar A, Salunke DM.	Sci Rep	10.1038/srep23600	2016
Enzymology	Crystallization and preliminary X-ray analysis of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis.	Tamura H, Ashida H, Koga S, Saito Y, Yadani T, Kai Y, Inoue T, Yokota A, Matsumura H.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s174430910804311x	2009
Proteome	Proteome-Wide Identification of Lysine Propionylation in the Conidial and Mycelial Stages of Trichophyton rubrum.	Xu X, Cao X, Yang J, Chen L, Liu B, Liu T, Jin Q.	Front Microbiol	10.3389/fmicb.2019.02613	2019
Biotechnology	Text mining tools for extracting information about microbial biodiversity in food.	Chaix E, Deleger L, Bossy R, Nedellec C.	Food Microbiol	10.1016/j.fm.2018.04.011	2019
Metabolism	Improving glyphosate oxidation activity of glycine oxidase from Bacillus cereus by directed evolution.	Zhan T, Zhang K, Chen Y, Lin Y, Wu G, Zhang L, Yao P, Shao Z, Liu Z.	PLoS One	10.1371/journal.pone.0079175	2013
	Genetic and genomic diversity of NheABC locus from Bacillus strains.	Cai Y, Huang T, Xu Y, Zhou G, Zou P, Zeng G, Liu X.	Arch Microbiol	10.1007/s00203-017-1350-9	2017
	A Survey of Pyridoxal 5'-Phosphate-Dependent Proteins in the Gram-Positive Model Bacterium Bacillus subtilis.	Richts B, Rosenberg J, Commichau FM.	Front Mol Biosci	10.3389/fmolb.2019.00032	2019
Metabolism	Loop of Streptomyces Feruloyl Esterase Plays an Important Role in the Enzyme's Catalyzing the Release of Ferulic Acid from Biomass.	Uraji M, Tamura H, Mizohata E, Arima J, Wan K, Ogawa K, Inoue T, Hatanaka T.	Appl Environ Microbiol	10.1128/aem.02300-17	2018
	Selective in vivo and in vitro activities of 3,3'-4-nitrobenzylidene-bis-4-hydroxycoumarin against methicillin-resistant Staphylococcus aureus by inhibition of DNA polymerase III.	Hou Z, Zhou Y, Li J, Zhang X, Shi X, Xue X, Li Z, Ma B, Wang Y, Li M, Luo X.	Sci Rep	10.1038/srep13637	2015
	Pyrophosphate release acts as a kinetic checkpoint during high-fidelity DNA replication by the Staphylococcus aureus replicative polymerase PolC.	Fagan SP, Mukherjee P, Jaremko WJ, Nelson-Rigg R, Wilson RC, Dangerfield TL, Johnson KA, Lahiri I, Pata JD.	Nucleic Acids Res	10.1093/nar/gkab613	2021
Enzymology	Identification in Marinomonas mediterranea of a novel quinoprotein with glycine oxidase activity.	Campillo-Brocal JC, Lucas-Elio P, Sanchez-Amat A.	Microbiologyopen	10.1002/mbo3.107	2013
Stress	Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus.	Takami H, Takaki Y, Chee GJ, Nishi S, Shimamura S, Suzuki H, Matsui S, Uchiyama I.	Nucleic Acids Res	10.1093/nar/gkh970	2004
Enzymology	Structure of PolC reveals unique DNA binding and fidelity determinants.	Evans RJ, Davies DR, Bullard JM, Christensen J, Green LS, Guiles JW, Pata JD, Ribble WK, Janjic N, Jarvis TC.	Proc Natl Acad Sci U S A	10.1073/pnas.0809989106	2008
Enzymology	High-fidelity DNA replication in Mycobacterium tuberculosis relies on a trinuclear zinc center.	Banos-Mateos S, van Roon AM, Lang UF, Maslen SL, Skehel JM, Lamers MH.	Nat Commun	10.1038/s41467-017-00886-w	2017
	Extremely variable conservation of gamma-type small, acid-soluble proteins from spores of some species in the bacterial order Bacillales.	Vyas J, Cox J, Setlow B, Coleman WH, Setlow P.	J Bacteriol	10.1128/jb.00018-11	2011
	Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis.	Ritchey LE, Tack DC, Yakhnin H, Jolley EA, Assmann SM, Bevilacqua PC, Babitzke P.	RNA	10.1261/rna.075986.120	2020
Metabolism	CobT and BzaC catalyze the regiospecific activation and methylation of the 5-hydroxybenzimidazole lower ligand in anaerobic cobamide biosynthesis.	Mathur Y, Sreyas S, Datar PM, Sathian MB, Hazra AB.	J Biol Chem	10.1074/jbc.ra120.014197	2020
Metabolism	Distribution in Different Organisms of Amino Acid Oxidases with FAD or a Quinone As Cofactor and Their Role as Antimicrobial Proteins in Marine Bacteria.	Campillo-Brocal JC, Lucas-Elio P, Sanchez-Amat A.	Mar Drugs	10.3390/md13127073	2015
Metabolism	Capture and Release of tRNA by the T-Loop Receptor in the Function of the T-Box Riboswitch.	Fang X, Michnicka M, Zhang Y, Wang YX, Nikonowicz EP.	Biochemistry	10.1021/acs.biochem.7b00284	2017
Enzymology	Directed evolution of a thermostable quorum-quenching lactonase from the amidohydrolase superfamily.	Chow JY, Xue B, Lee KH, Tung A, Wu L, Robinson RC, Yew WS.	J Biol Chem	10.1074/jbc.m110.177139	2010
Genetics	The fate of laterally transferred genes: life in the fast lane to adaptation or death.	Hao W, Golding GB.	Genome Res	10.1101/gr.4746406	2006
	Mechanism of the intramolecular Claisen condensation reaction catalyzed by MenB, a crotonase superfamily member.	Li HJ, Li X, Liu N, Zhang H, Truglio JJ, Mishra S, Kisker C, Garcia-Diaz M, Tonge PJ.	Biochemistry	10.1021/bi200877x	2011
Metabolism	Improved thermostability and acetic acid tolerance of Escherichia coli via directed evolution of homoserine o-succinyltransferase.	Mordukhova EA, Lee HS, Pan JG.	Appl Environ Microbiol	10.1128/aem.00654-08	2008
Metabolism	Replisome structure and conformational dynamics underlie fork progression past obstacles.	Yao NY, O'Donnell M.	Curr Opin Cell Biol	10.1016/j.ceb.2009.02.008	2009
Metabolism	Solution conformation of wild-type E. coli Hsp70 (DnaK) chaperone complexed with ADP and substrate.	Bertelsen EB, Chang L, Gestwicki JE, Zuiderweg ER.	Proc Natl Acad Sci U S A	10.1073/pnas.0903503106	2009
Enzymology	Structural and functional similarities between a ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO)-like protein from Bacillus subtilis and photosynthetic RuBisCO.	Saito Y, Ashida H, Sakiyama T, de Marsac NT, Danchin A, Sekowska A, Yokota A.	J Biol Chem	10.1074/jbc.m807095200	2009
Metabolism	Unusual C=C bond isomerization of an alpha,beta-unsaturated gamma-butyrolactone catalysed by flavoproteins from the old yellow enzyme family.	Durchschein K, Wallner S, Macheroux P, Zangger K, Fabian WM, Faber K.	Chembiochem	10.1002/cbic.201200475	2012
Metabolism	Assembly of nonheme Mn/Fe active sites in heterodinuclear metalloproteins.	Griese JJ, Srinivas V, Hogbom M.	J Biol Inorg Chem	10.1007/s00775-014-1140-7	2014
Genetics	The random nature of genome architecture: predicting open reading frame distributions.	McCoy MW, Allen AP, Gillooly JF.	PLoS One	10.1371/journal.pone.0006456	2009
Metabolism	Salt Bridge Swapping in the EXXERFXYY Motif of Proton-coupled Oligopeptide Transporters.	Aduri NG, Prabhala BK, Ernst HA, Jorgensen FS, Olsen L, Mirza O.	J Biol Chem	10.1074/jbc.m115.675603	2015
Metabolism	Chemical flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins.	Kutin Y, Kositzki R, Branca RMM, Srinivas V, Lundin D, Haumann M, Hogbom M, Cox N, Griese JJ.	J Biol Chem	10.1074/jbc.ra119.010570	2019
	Higher diversity and abundance of denitrifying microorganisms in environments than considered previously.	Wei W, Isobe K, Nishizawa T, Zhu L, Shiratori Y, Ohte N, Koba K, Otsuka S, Senoo K.	ISME J	10.1038/ismej.2015.9	2015
Metabolism	Multispecific Substrate Recognition in a Proton-Dependent Oligopeptide Transporter.	Martinez Molledo M, Quistgaard EM, Flayhan A, Pieprzyk J, Low C.	Structure	10.1016/j.str.2018.01.005	2018
Enzymology	Unraveling the lipolytic activity of thermophilic bacteria isolated from a volcanic environment.	Stathopoulou PM, Savvides AL, Karagouni AD, Hatzinikolaou DG.	Biomed Res Int	10.1155/2013/703130	2013
Metabolism	Autoinducer-2-producing protein LuxS, a novel salt- and chloride-induced protein in the moderately halophilic bacterium Halobacillus halophilus.	Sewald X, Saum SH, Palm P, Pfeiffer F, Oesterhelt D, Muller V.	Appl Environ Microbiol	10.1128/aem.01625-06	2007
Metabolism	The C-terminal GGAP motif of Hsp70 mediates substrate recognition and stress response in yeast.	Gong W, Hu W, Xu L, Wu H, Wu S, Zhang H, Wang J, Jones GW, Perrett S.	J Biol Chem	10.1074/jbc.ra118.002691	2018
Metabolism	Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.	Griese JJ, Kositzki R, Schrapers P, Branca RM, Nordstrom A, Lehtio J, Haumann M, Hogbom M.	J Biol Chem	10.1074/jbc.m115.675223	2015
Enzymology	Multiple Quorum Quenching Enzymes Are Active in the Nosocomial Pathogen Acinetobacter baumannii ATCC17978.	Mayer C, Muras A, Romero M, Lopez M, Tomas M, Otero A.	Front Cell Infect Microbiol	10.3389/fcimb.2018.00310	2018
	Plant organellar DNA polymerases repair double-stranded breaks by microhomology-mediated end-joining.	Garcia-Medel PL, Baruch-Torres N, Peralta-Castro A, Trasvina-Arenas CH, Torres-Larios A, Brieba LG.	Nucleic Acids Res	10.1093/nar/gkz039	2019
Metabolism	Distribution of microbial arsenic reduction, oxidation and extrusion genes along a wide range of environmental arsenic concentrations.	Escudero LV, Casamayor EO, Chong G, Pedros-Alio C, Demergasso C.	PLoS One	10.1371/journal.pone.0078890	2013
	Classification and regression tree (CART) analyses of genomic signatures reveal sets of tetramers that discriminate temperature optima of archaea and bacteria.	Dyer BD, Kahn MJ, Leblanc MD.	Archaea	10.1155/2008/829730	2008
Metabolism	Thermophilic Coenzyme B12-Dependent Acyl Coenzyme A (CoA) Mutase from Kyrpidia tusciae DSM 2912 Preferentially Catalyzes Isomerization of (R)-3-Hydroxybutyryl-CoA and 2-Hydroxyisobutyryl-CoA.	Weichler MT, Kurteva-Yaneva N, Przybylski D, Schuster J, Muller RH, Harms H, Rohwerder T.	Appl Environ Microbiol	10.1128/aem.00716-15	2015
Metabolism	Identification and Characterization of a New 7-Aminocephalosporanic Acid Deacetylase from Thermophilic Bacterium Alicyclobacillus tengchongensis.	Ding JM, Yu TT, Han NY, Yu JL, Li JJ, Yang YJ, Tang XH, Xu B, Zhou JP, Tang HZ, Huang ZX.	J Bacteriol	10.1128/jb.00471-15	2016
	Structural determinants for geometry and information decoding of tRNA by T box leader RNA.	Grigg JC, Ke A.	Structure	10.1016/j.str.2013.09.001	2013
Genetics	Engineering the genome of Thermus thermophilus using a counterselectable marker.	Carr JF, Danziger ME, Huang AL, Dahlberg AE, Gregory ST.	J Bacteriol	10.1128/jb.02384-14	2015
Metabolism	Crystal structure of the nucleotide-binding domain of mortalin, the mitochondrial Hsp70 chaperone.	Amick J, Schlanger SE, Wachnowsky C, Moseng MA, Emerson CC, Dare M, Luo WI, Ithychanda SS, Nix JC, Cowan JA, Page RC, Misra S.	Protein Sci	10.1002/pro.2466	2014
Metabolism	Role of electrostatic interactions for ligand recognition and specificity of peptide transporters.	Boggavarapu R, Jeckelmann JM, Harder D, Ucurum Z, Fotiadis D.	BMC Biol	10.1186/s12915-015-0167-8	2015
	Lysogeny and sporulation in Bacillus isolates from the Gulf of Mexico.	Mobberley J, Authement RN, Segall AM, Edwards RA, Slepecky RA, Paul JH.	Appl Environ Microbiol	10.1128/aem.01710-09	2010
Metabolism	Hsp70 forms antiparallel dimers stabilized by post-translational modifications to position clients for transfer to Hsp90.	Morgner N, Schmidt C, Beilsten-Edmands V, Ebong IO, Patel NA, Clerico EM, Kirschke E, Daturpalli S, Jackson SE, Agard D, Robinson CV.	Cell Rep	10.1016/j.celrep.2015.03.063	2015
Metabolism	IcmF is a fusion between the radical B12 enzyme isobutyryl-CoA mutase and its G-protein chaperone.	Cracan V, Padovani D, Banerjee R.	J Biol Chem	10.1074/jbc.m109.062182	2010
Metabolism	A missing enzyme in thiamin thiazole biosynthesis: identification of TenI as a thiazole tautomerase.	Hazra AB, Han Y, Chatterjee A, Zhang Y, Lai RY, Ealick SE, Begley TP.	J Am Chem Soc	10.1021/ja1110514	2011
Metabolism	Structural insights into putative molybdenum cofactor biosynthesis protein C (MoaC2) from Mycobacterium tuberculosis H37Rv.	Srivastava VK, Srivastava S, Arora A, Pratap JV.	PLoS One	10.1371/journal.pone.0058333	2013
	Evaluation method for the potential functionome harbored in the genome and metagenome.	Takami H, Taniguchi T, Moriya Y, Kuwahara T, Kanehisa M, Goto S.	BMC Genomics	10.1186/1471-2164-13-699	2012
Metabolism	Key Structural Motifs Balance Metal Binding and Oxidative Reactivity in a Heterobimetallic Mn/Fe Protein.	Kisgeropoulos EC, Griese JJ, Smith ZR, Branca RMM, Schneider CR, Hogbom M, Shafaat HS.	J Am Chem Soc	10.1021/jacs.0c00333	2020
Metabolism	Helicobacter pylori FlhB function: the FlhB C-terminal homologue HP1575 acts as a "spare part" to permit flagellar export when the HP0770 FlhBCC domain is deleted.	Wand ME, Sockett RE, Evans KJ, Doherty N, Sharp PM, Hardie KR, Winzer K.	J Bacteriol	10.1128/jb.00263-06	2006
	Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family.	Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley SK, Almo SC, Glasner ME.	Proc Natl Acad Sci U S A	10.1073/pnas.1318703111	2014
	Mechanism of staphylococcal multiresistance plasmid replication origin assembly by the RepA protein.	Schumacher MA, Tonthat NK, Kwong SM, Chinnam NB, Liu MA, Skurray RA, Firth N.	Proc Natl Acad Sci U S A	10.1073/pnas.1406065111	2014
Metabolism	DnaC, the indispensable companion of DnaB helicase, controls the accessibility of DnaB helicase by primase.	Felczak MM, Chodavarapu S, Kaguni JM.	J Biol Chem	10.1074/jbc.m117.807644	2017
Metabolism	Integrated multi-omics analyses reveal the biochemical mechanisms and phylogenetic relevance of anaerobic androgen biodegradation in the environment.	Yang FC, Chen YL, Tang SL, Yu CP, Wang PH, Ismail W, Wang CH, Ding JY, Yang CY, Yang CY, Chiang YR.	ISME J	10.1038/ismej.2015.255	2016
	The evolution of respiratory chain complex I from a smaller last common ancestor consisting of 11 protein subunits.	Moparthi VK, Hagerhall C.	J Mol Evol	10.1007/s00239-011-9447-2	2011
	Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA.	Zhang J, Ferre-D'Amare AR.	Nature	10.1038/nature12440	2013
	A commensal symbiotic interrelationship for the growth of Symbiobacterium toebii with its partner bacterium, Geobacillus toebii.	Kim K, Kim JJ, Masui R, Kuramitsu S, Sung MH.	BMC Res Notes	10.1186/1756-0500-4-437	2011
Stress	Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function.	Inskeep WP, Rusch DB, Jay ZJ, Herrgard MJ, Kozubal MA, Richardson TH, Macur RE, Hamamura N, Jennings Rd, Fouke BW, Reysenbach AL, Roberto F, Young M, Schwartz A, Boyd ES, Badger JH, Mathur EJ, Ortmann AC, Bateson M, Geesey G, Frazier M.	PLoS One	10.1371/journal.pone.0009773	2010
Metabolism	Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species.	Zhao X, Kuipers OP.	BMC Genomics	10.1186/s12864-016-3224-y	2016
	Investigation of the bacterial communities associated with females of Lutzomyia sand fly species from South America.	Sant'Anna MR, Darby AC, Brazil RP, Montoya-Lerma J, Dillon VM, Bates PA, Dillon RJ.	PLoS One	10.1371/journal.pone.0042531	2012
Enzymology	Characterization of a thermoacidophilic L-arabinose isomerase from Alicyclobacillus acidocaldarius: role of Lys-269 in pH optimum.	Lee SJ, Lee DW, Choe EA, Hong YH, Kim SB, Kim BC, Pyun YR.	Appl Environ Microbiol	10.1128/aem.71.12.7888-7896.2005	2005
Metabolism	Allosteric regulation of a protein acetyltransferase in Micromonospora aurantiaca by the amino acids cysteine and arginine.	Xu JY, You D, Leng PQ, Ye BC.	J Biol Chem	10.1074/jbc.m114.579078	2014
	Contrasting evolutionary patterns of spore coat proteins in two Bacillus species groups are linked to a difference in cellular structure.	Qin H, Driks A.	BMC Evol Biol	10.1186/1471-2148-13-261	2013
Genetics	The Revisited Genome of Bacillus subtilis Bacteriophage SPP1.	Godinho LM, El Sadek Fadel M, Monniot C, Jakutyte L, Auzat I, Labarde A, Djacem K, Oliveira L, Carballido-Lopez R, Ayora S, Tavares P.	Viruses	10.3390/v10120705	2018
Metabolism	RloC: a wobble nucleotide-excising and zinc-responsive bacterial tRNase.	Davidov E, Kaufmann G.	Mol Microbiol	10.1111/j.1365-2958.2008.06387.x	2008
Metabolism	Phylogenomically guided identification of industrially relevant GH1 beta-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry.	Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, Scullin CS, Singh S, Shi W, Hamilton MG, Bendall ML, Sczyrba A, Thompson J, Feldman T, Guenther JM, Gladden JM, Cheng JF, Adams PD, Rubin EM, Simmons BA, Sale KL, Northen TR, Deutsch S.	ACS Chem Biol	10.1021/cb500244v	2014
	Protein similarity networks reveal relationships among sequence, structure, and function within the Cupin superfamily.	Uberto R, Moomaw EW.	PLoS One	10.1371/journal.pone.0074477	2013
	Identification and analysis of novel amino-acid sequence repeats in Bacillus anthracis str. Ames proteome using computational tools.	Hemalatha GR, Rao DS, Guruprasad L.	Comp Funct Genomics	10.1155/2007/47161	2007
Enzymology	A DNA break inducer activates the anticodon nuclease RloC and the adaptive immunity in Acinetobacter baylyi ADP1.	Klaiman D, Steinfels-Kohn E, Kaufmann G.	Nucleic Acids Res	10.1093/nar/gkt851	2014
Enzymology	A conserved surface loop in type I dehydroquinate dehydratases positions an active site arginine and functions in substrate binding.	Light SH, Minasov G, Shuvalova L, Peterson SN, Caffrey M, Anderson WF, Lavie A.	Biochemistry	10.1021/bi102020s	2011
Metabolism	Molecular insights into proton coupled peptide transport in the PTR family of oligopeptide transporters.	Newstead S.	Biochim Biophys Acta	10.1016/j.bbagen.2014.05.011	2015
Metabolism	Specificity in glycosylation of multiple flagellins by the modular and cell cycle regulated glycosyltransferase FlmG.	Ardissone S, Kint N, Viollier PH.	Elife	10.7554/elife.60488	2020
Metabolism	Structure of LP2179, the first representative of Pfam family PF08866, suggests a new fold with a role in amino-acid metabolism.	Bakolitsa C, Kumar A, Carlton D, Miller MD, Krishna SS, Abdubek P, Astakhova T, Axelrod HL, Chiu HJ, Clayton T, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Grant JC, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Tien HJ, Trout CV, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309109023689	2010
Metabolism	The wobble nucleotide-excising anticodon nuclease RloC is governed by the zinc-hook and DNA-dependent ATPase of its Rad50-like region.	Klaiman D, Steinfels-Kohn E, Krutkina E, Davidov E, Kaufmann G.	Nucleic Acids Res	10.1093/nar/gks593	2012
	Evolutionary mix-and-match with MFS transporters II.	Madej MG, Kaback HR.	Proc Natl Acad Sci U S A	10.1073/pnas.1319754110	2013
	Gating topology of the proton-coupled oligopeptide symporters.	Fowler PW, Orwick-Rydmark M, Radestock S, Solcan N, Dijkman PM, Lyons JA, Kwok J, Caffrey M, Watts A, Forrest LR, Newstead S.	Structure	10.1016/j.str.2014.12.012	2015
Metabolism	Substrate specificity of a mannose-6-phosphate isomerase from Bacillus subtilis and its application in the production of L-ribose.	Yeom SJ, Ji JH, Kim NH, Park CS, Oh DK.	Appl Environ Microbiol	10.1128/aem.00310-09	2009
Enzymology	A novel clade of unique eukaryotic ribonucleotide reductase R2 subunits is exclusive to apicomplexan parasites.	Munro JB, Jacob CG, Silva JC.	J Mol Evol	10.1007/s00239-013-9583-y	2013
Metabolism	Thermodynamic evidence for a dual transport mechanism in a POT peptide transporter.	Parker JL, Mindell JA, Newstead S.	Elife	10.7554/elife.04273	2014
Metabolism	Lantibiotics from Geobacillus thermodenitrificans.	Garg N, Tang W, Goto Y, Nair SK, van der Donk WA.	Proc Natl Acad Sci U S A	10.1073/pnas.1116815109	2012
Phylogeny	Co-evolution of Bacterial Ribosomal Protein S15 with Diverse mRNA Regulatory Structures.	Slinger BL, Newman H, Lee Y, Pei S, Meyer MM.	PLoS Genet	10.1371/journal.pgen.1005720	2015
Metabolism	Roles and regulation of Spx family transcription factors in Bacillus subtilis and related species.	Rojas-Tapias DF, Helmann JD.	Adv Microb Physiol	10.1016/bs.ampbs.2019.05.003	2019
Metabolism	Kinetic and structural characterization of human mortalin.	Luo WI, Dizin E, Yoon T, Cowan JA.	Protein Expr Purif	10.1016/j.pep.2010.02.003	2010
Phylogeny	Bioinformatic characterization of the 4-Toluene Sulfonate Uptake Permease (TSUP) family of transmembrane proteins.	Shlykov MA, Zheng WH, Chen JS, Saier MH.	Biochim Biophys Acta	10.1016/j.bbamem.2011.12.005	2012
Enzymology	A structural role for the PHP domain in E. coli DNA polymerase III.	Barros T, Guenther J, Kelch B, Anaya J, Prabhakar A, O'Donnell M, Kuriyan J, Lamers MH.	BMC Struct Biol	10.1186/1472-6807-13-8	2013
Metabolism	The c-ring stoichiometry of ATP synthase is adapted to cell physiological requirements of alkaliphilic Bacillus pseudofirmus OF4.	Preiss L, Klyszejko AL, Hicks DB, Liu J, Fackelmayer OJ, Yildiz O, Krulwich TA, Meier T.	Proc Natl Acad Sci U S A	10.1073/pnas.1303333110	2013
Metabolism	Architecture of the Pol III-clamp-exonuclease complex reveals key roles of the exonuclease subunit in processive DNA synthesis and repair.	Toste Rego A, Holding AN, Kent H, Lamers MH.	EMBO J	10.1038/emboj.2013.68	2013
	Prediction of transcriptional terminators in Bacillus subtilis and related species.	de Hoon MJ, Makita Y, Nakai K, Miyano S.	PLoS Comput Biol	10.1371/journal.pcbi.0010025	2005
Metabolism	Engineered and Native Coenzyme B12-dependent Isovaleryl-CoA/Pivalyl-CoA Mutase.	Kitanishi K, Cracan V, Banerjee R.	J Biol Chem	10.1074/jbc.m115.646299	2015
	Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria.	Fu Y, Deiorio-Haggar K, Anthony J, Meyer MM.	Nucleic Acids Res	10.1093/nar/gkt055	2013
	Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics.	Alcaraz LD, Moreno-Hagelsieb G, Eguiarte LE, Souza V, Herrera-Estrella L, Olmedo G.	BMC Genomics	10.1186/1471-2164-11-332	2010
	Replisome Assembly at Bacterial Chromosomes and Iteron Plasmids.	Wegrzyn KE, Gross M, Uciechowska U, Konieczny I.	Front Mol Biosci	10.3389/fmolb.2016.00039	2016
Metabolism	Structure of surface layer homology (SLH) domains from Bacillus anthracis surface array protein.	Kern J, Wilton R, Zhang R, Binkowski TA, Joachimiak A, Schneewind O.	J Biol Chem	10.1074/jbc.m111.248070	2011
Metabolism	Loading mechanisms of ring helicases at replication origins.	Soultanas P.	Mol Microbiol	10.1111/j.1365-2958.2012.08012.x	2012
Metabolism	DnaB helicase activity is modulated by DNA geometry and force.	Ribeck N, Kaplan DL, Bruck I, Saleh OA.	Biophys J	10.1016/j.bpj.2010.07.039	2010
	Structural and functional consequences of phosphate-arsenate substitutions in selected nucleotides: DNA, RNA, and ATP.	Xu Y, Ma B, Nussinov R.	J Phys Chem B	10.1021/jp300307u	2012
Metabolism	Kinetic characterization of exonuclease-deficient Staphylococcus aureus PolC, a C-family replicative DNA polymerase.	Lahiri I, Mukherjee P, Pata JD.	PLoS One	10.1371/journal.pone.0063489	2013
Metabolism	Mechanisms of the Hsp70 chaperone system.	Young JC.	Biochem Cell Biol	10.1139/o09-175	2010
	Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life.	Valas RE, Bourne PE.	Biol Direct	10.1186/1745-6150-4-30	2009
Enzymology	Incidence and diversity of potentially highly heat-resistant spores isolated at dairy farms.	Scheldeman P, Pil A, Herman L, De Vos P, Heyndrickx M.	Appl Environ Microbiol	10.1128/aem.71.3.1480-1494.2005	2005
	Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis.	Leyn SA, Kazanov MD, Sernova NV, Ermakova EO, Novichkov PS, Rodionov DA.	J Bacteriol	10.1128/jb.00140-13	2013
Genetics	Selection-driven extinction dynamics for group II introns in Enterobacteriales.	Leclercq S, Cordaux R.	PLoS One	10.1371/journal.pone.0052268	2012
	Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA.	Chen M, Asai SI, Narai S, Nambu S, Omura N, Sakaguchi Y, Suzuki T, Ikeda-Saito M, Watanabe K, Yao M, Shigi N, Tanaka Y.	Proc Natl Acad Sci U S A	10.1073/pnas.1615585114	2017
Phylogeny	New insights into the phylogeny and molecular classification of nicotinamide mononucleotide deamidases.	Sanchez-Carron G, Martinez-Monino AB, Sola-Carvajal A, Takami H, Garcia-Carmona F, Sanchez-Ferrer A.	PLoS One	10.1371/journal.pone.0082705	2013
Enzymology	Redundancy and modularity in membrane-associated dissimilatory nitrate reduction in Bacillus.	Heylen K, Keltjens J.	Front Microbiol	10.3389/fmicb.2012.00371	2012
Metabolism	A glyS T-box riboswitch with species-specific structural features responding to both proteinogenic and nonproteinogenic tRNAGly isoacceptors.	Apostolidi M, Saad NY, Drainas D, Pournaras S, Becker HD, Stathopoulos C.	RNA	10.1261/rna.052712.115	2015
Enzymology	Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides.	Wang W, Wu EY, Hellinga HW, Beese LS.	J Biol Chem	10.1074/jbc.m112.366609	2012
Metabolism	Functional implications and ubiquitin-dependent degradation of the peptide transporter Ptr2 in Saccharomyces cerevisiae.	Kawai K, Moriya A, Uemura S, Abe F.	Eukaryot Cell	10.1128/ec.00094-14	2014
	Structural studies of tri-functional human GART.	Welin M, Grossmann JG, Flodin S, Nyman T, Stenmark P, Tresaugues L, Kotenyova T, Johansson I, Nordlund P, Lehtio L.	Nucleic Acids Res	10.1093/nar/gkq595	2010
Metabolism	Helicase loading at chromosomal origins of replication.	Bell SP, Kaguni JM.	Cold Spring Harb Perspect Biol	10.1101/cshperspect.a010124	2013
	Metagenomic analysis of taxa associated with Lutzomyia longipalpis, vector of visceral leishmaniasis, using an unbiased high-throughput approach.	McCarthy CB, Diambra LA, Rivera Pomar RV.	PLoS Negl Trop Dis	10.1371/journal.pntd.0001304	2011
	Functional analysis of the carboxy-terminal region of Bacillus subtilis TnrA, a MerR family protein.	Wray LV, Fisher SH.	J Bacteriol	10.1128/jb.01238-06	2007
	Acyl-CoA dehydrogenases: Dynamic history of protein family evolution.	Swigonova Z, Mohsen AW, Vockley J.	J Mol Evol	10.1007/s00239-009-9263-0	2009
	Uncovering rate variation of lateral gene transfer during bacterial genome evolution.	Hao W, Golding GB.	BMC Genomics	10.1186/1471-2164-9-235	2008
Metabolism	Essentiality of threonylcarbamoyladenosine (t(6)A), a universal tRNA modification, in bacteria.	Thiaville PC, El Yacoubi B, Kohrer C, Thiaville JJ, Deutsch C, Iwata-Reuyl D, Bacusmo JM, Armengaud J, Bessho Y, Wetzel C, Cao X, Limbach PA, RajBhandary UL, de Crecy-Lagard V.	Mol Microbiol	10.1111/mmi.13209	2015
	The genome of a Bacillus isolate causing anthrax in chimpanzees combines chromosomal properties of B. cereus with B. anthracis virulence plasmids.	Klee SR, Brzuszkiewicz EB, Nattermann H, Bruggemann H, Dupke S, Wollherr A, Franz T, Pauli G, Appel B, Liebl W, Couacy-Hymann E, Boesch C, Meyer FD, Leendertz FH, Ellerbrok H, Gottschalk G, Grunow R, Liesegang H.	PLoS One	10.1371/journal.pone.0010986	2010
Metabolism	Novel coenzyme B12-dependent interconversion of isovaleryl-CoA and pivalyl-CoA.	Cracan V, Banerjee R.	J Biol Chem	10.1074/jbc.m111.320051	2012
Metabolism	Kinase activity of overexpressed HipA is required for growth arrest and multidrug tolerance in Escherichia coli.	Correia FF, D'Onofrio A, Rejtar T, Li L, Karger BL, Makarova K, Koonin EV, Lewis K.	J Bacteriol	10.1128/jb.01237-06	2006
Metabolism	ComEA is essential for the transfer of external DNA into the periplasm in naturally transformable Vibrio cholerae cells.	Seitz P, Pezeshgi Modarres H, Borgeaud S, Bulushev RD, Steinbock LJ, Radenovic A, Dal Peraro M, Blokesch M.	PLoS Genet	10.1371/journal.pgen.1004066	2014
Metabolism	SR1--a small RNA with two remarkably conserved functions.	Gimpel M, Preis H, Barth E, Gramzow L, Brantl S.	Nucleic Acids Res	10.1093/nar/gks895	2012
Genetics	Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1.	Takaki Y, Shimamura S, Nakagawa S, Fukuhara Y, Horikawa H, Ankai A, Harada T, Hosoyama A, Oguchi A, Fukui S, Fujita N, Takami H, Takai K.	DNA Res	10.1093/dnares/dsq005	2010
Proteome	Role of key salt bridges in thermostability of G. thermodenitrificans EstGtA2: distinctive patterns within the new bacterial lipolytic enzyme subfamily XIII.2 [corrected].	Charbonneau DM, Beauregard M.	PLoS One	10.1371/journal.pone.0076675	2013
Phylogeny	Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.	Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, Grayburn S, Dhingra S, Lukyanchuk V, Ball B, Ul-Qamar R, Seibel J, Bremer E, Jahn D, Ravel J, Vary PS.	J Bacteriol	10.1128/jb.00449-11	2011
Genetics	Multiple genome alignment for identifying the core structure among moderately related microbial genomes.	Uchiyama I.	BMC Genomics	10.1186/1471-2164-9-515	2008
Metabolism	Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria.	Meyer MM, Roth A, Chervin SM, Garcia GA, Breaker RR.	RNA	10.1261/rna.937308	2008
	CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.	Uchiyama I, Higuchi T, Kobayashi I.	BMC Bioinformatics	10.1186/1471-2105-7-472	2006
Metabolism	Fluorescent sensors for activity and regulation of the nitrate transceptor CHL1/NRT1.1 and oligopeptide transporters.	Ho CH, Frommer WB.	Elife	10.7554/elife.01917	2014
Metabolism	Determinants of eukaryal cell killing by the bacterial ribotoxin PrrC.	Meineke B, Schwer B, Schaffrath R, Shuman S.	Nucleic Acids Res	10.1093/nar/gkq831	2011
Genetics	Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1.	Saw JH, Mountain BW, Feng L, Omelchenko MV, Hou S, Saito JA, Stott MB, Li D, Zhao G, Wu J, Galperin MY, Koonin EV, Makarova KS, Wolf YI, Rigden DJ, Dunfield PF, Wang L, Alam M.	Genome Biol	10.1186/gb-2008-9-11-r161	2008
Metabolism	TasA-tasB, a new putative toxin-antitoxin (TA) system from Bacillus thuringiensis pGI1 plasmid is a widely distributed composite mazE-doc TA system.	Fico S, Mahillon J.	BMC Genomics	10.1186/1471-2164-7-259	2006
Metabolism	Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing.	Mohr S, Ghanem E, Smith W, Sheeter D, Qin Y, King O, Polioudakis D, Iyer VR, Hunicke-Smith S, Swamy S, Kuersten S, Lambowitz AM.	RNA	10.1261/rna.039743.113	2013
Metabolism	Biochemical and molecular characterization of the biosynthesis of glutamine and glutamate, two major compatible solutes in the moderately halophilic bacterium Halobacillus halophilus.	Saum SH, Sydow JF, Palm P, Pfeiffer F, Oesterhelt D, Muller V.	J Bacteriol	10.1128/jb.00781-06	2006
Enzymology	Functional and structural characterization of four glutaminases from Escherichia coli and Bacillus subtilis.	Brown G, Singer A, Proudfoot M, Skarina T, Kim Y, Chang C, Dementieva I, Kuznetsova E, Gonzalez CF, Joachimiak A, Savchenko A, Yakunin AF.	Biochemistry	10.1021/bi800097h	2008
Phylogeny	Stratification of co-evolving genomic groups using ranked phylogenetic profiles.	Freilich S, Goldovsky L, Gottlieb A, Blanc E, Tsoka S, Ouzounis CA.	BMC Bioinformatics	10.1186/1471-2105-10-355	2009
Metabolism	Cross-regulation of the Bacillus subtilis glnRA and tnrA genes provides evidence for DNA binding site discrimination by GlnR and TnrA.	Zalieckas JM, Wray LV, Fisher SH.	J Bacteriol	10.1128/jb.188.7.2578-2585.2006	2006
	A widespread peroxiredoxin-like domain present in tumor suppression- and progression-implicated proteins.	Pawlowski K, Muszewska A, Lenart A, Szczepinska T, Godzik A, Grynberg M.	BMC Genomics	10.1186/1471-2164-11-590	2010
	Transcriptomic and phenotypic analyses suggest a network between the transcriptional regulators HrcA and sigmaB in Listeria monocytogenes.	Hu Y, Oliver HF, Raengpradub S, Palmer ME, Orsi RH, Wiedmann M, Boor KJ.	Appl Environ Microbiol	10.1128/aem.01281-07	2007
Enzymology	Comprehensive analysis of DNA polymerase III alpha subunits and their homologs in bacterial genomes.	Timinskas K, Balvociute M, Timinskas A, Venclovas C.	Nucleic Acids Res	10.1093/nar/gkt900	2014
Metabolism	Molecular basis of TRAP-5'SL RNA interaction in the Bacillus subtilis trp operon transcription attenuation mechanism.	McGraw AP, Mokdad A, Major F, Bevilacqua PC, Babitzke P.	RNA	10.1261/rna.1314409	2009
	The Bet v 1 fold: an ancient, versatile scaffold for binding of large, hydrophobic ligands.	Radauer C, Lackner P, Breiteneder H.	BMC Evol Biol	10.1186/1471-2148-8-286	2008
Phylogeny	A phylogenomic profile of globins.	Vinogradov SN, Hoogewijs D, Bailly X, Arredondo-Peter R, Gough J, Dewilde S, Moens L, Vanfleteren JR.	BMC Evol Biol	10.1186/1471-2148-6-31	2006
Metabolism	AMPylation targets the rate-limiting step of BiP's ATPase cycle for its functional inactivation.	Preissler S, Rohland L, Yan Y, Chen R, Read RJ, Ron D.	Elife	10.7554/elife.29428	2017
Metabolism	Serine proteases from two cell types target different components of a complex that governs regulated intramembrane proteolysis of pro-sigmaK during Bacillus subtilis development.	Zhou R, Kroos L.	Mol Microbiol	10.1111/j.1365-2958.2005.04870.x	2005
	Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.	Silverio AL, Saier MH.	J Membr Biol	10.1007/s00232-011-9364-8	2011
Genetics	Relationship between operon preference and functional properties of persistent genes in bacterial genomes.	Bratlie MS, Johansen J, Drablos F.	BMC Genomics	10.1186/1471-2164-11-71	2010
Metabolism	Physiological modulation of BiP activity by trans-protomer engagement of the interdomain linker.	Preissler S, Chambers JE, Crespillo-Casado A, Avezov E, Miranda E, Perez J, Hendershot LM, Harding HP, Ron D.	Elife	10.7554/elife.08961	2015
Metabolism	Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins.	Stetz G, Verkhivker GM.	PLoS One	10.1371/journal.pone.0143752	2015
	Post-transcriptional control by bacteriophage T4: mRNA decay and inhibition of translation initiation.	Uzan M, Miller ES.	Virol J	10.1186/1743-422x-7-360	2010
Genetics	Survey of group I and group II introns in 29 sequenced genomes of the Bacillus cereus group: insights into their spread and evolution.	Tourasse NJ, Kolsto AB.	Nucleic Acids Res	10.1093/nar/gkn372	2008
	Effects of small heat shock proteins from thermotolerant bacteria on the stress resistance of Escherichia coli to temperature, pH, and hyperosmolarity.	Sato Y, Okano K, Honda K.	Extremophiles	10.1007/s00792-023-01326-y	2024
Genetics	Unveiling the probiotic potential of the genus Geobacillus through comparative genomics and in silico analysis.	Najar IN, Sharma P, Das R, Mondal K, Singh AK, Radha A, Sharma V, Sharma S, Thakur N, Gandhi SG, Kumar V.	Sci Rep	10.1038/s41598-025-98392-3	2025
	A tRNA modification with aminovaleramide facilitates AUA decoding in protein synthesis.	Miyauchi K, Kimura S, Akiyama N, Inoue K, Ishiguro K, Vu TS, Srisuknimit V, Koyama K, Hayashi G, Soma A, Nagao A, Shirouzu M, Okamoto A, Waldor MK, Suzuki T.	Nat Chem Biol	10.1038/s41589-024-01726-x	2025
	Expression and Purification of BsaXI Restriction Endonuclease and Engineering New Specificity From BsaXI Specificity Subunit.	Gidwani S, Heiter D, Xu SY.	Front Microbiol	10.3389/fmicb.2022.888435	2022
Genetics	Genome Annotation of Poly(lactic acid) Degrading Pseudomonas aeruginosa, Sphingobacterium sp. and Geobacillus sp.	Satti SM, Castro-Aguirre E, Shah AA, Marsh TL, Auras R.	Int J Mol Sci	10.3390/ijms22147385	2021
Enzymology	Identification and Heterologous Production of a Lipase from Geobacillus kaustophilus DSM 7263(T) and Tailoring Its N-Terminal by a His-Tag Epitope.	Ozdemir FI, Tulek A, Erdogan D	Protein J	10.1007/s10930-021-09987-4	2021
Genetics	Draft Genome Sequence of Geobacillus kaustophilus GBlys, a Lysogenic Strain with Bacteriophage OH2.	Doi K, Mori K, Martono H, Nagayoshi Y, Fujino Y, Tashiro K, Kuhara S, Ohshima T	Genome Announc	10.1128/genomeA.00634-13	2013
Phylogeny	Isolation and characterization of arsenic resistant Geobacillus kaustophilus strain from geothermal soils.	Cuebas M, Sannino D, Bini E	J Basic Microbiol	10.1002/jobm.201000314	2011
Enzymology	Biochemical characterization and detection of antitumor activity of l-asparaginase from thermophilic Geobacillus kaustophilus DSM 7263(T).	Ozdemir FI, Didem Orhan M, Atasavum ZT, Tulek A	Protein Expr Purif	10.1016/j.pep.2022.106146	2022
Phylogeny	Geobacillus zalihae sp. nov., a thermophilic lipolytic bacterium isolated from palm oil mill effluent in Malaysia.	Abd Rahman RN, Leow TC, Salleh AB, Basri M	BMC Microbiol	10.1186/1471-2180-7-77	2007
Phylogeny	Geobacillus thermoleovorans subsp. stromboliensis subsp. nov., isolated from the geothermal volcanic environment.	Romano I, Poli A, Lama L, Gambacorta A, Nicolaus B	J Gen Appl Microbiol	10.2323/jgam.51.183	2005

References

#3082	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7263
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23044	T. N. Nazina,T. P. Tourova,A. B. Poltaraus,E. V. Novikova,A. A. Grigoryan,A. E. Ivanova,A. M. Lysenko,V. V. Petrunyaka,G. A. Osipov,S. S. Belyaev,M. V. Ivanov: Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. th.. IJSEM 51: 433 - 446 2001 ( DOI 10.1099/00207713-51-2-433 , PubMed 11321089 )
#38651	; Curators of the CIP;
#49445	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28890
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#120393	Collection of Institut Pasteur ; Curators of the CIP; CIP 106929
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Geobacillus kaustophilus (DSM 7263, ATCC 8005, NCIMB 8547)

Name and taxonomic classification

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Physiology and metabolism

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