Name: Spiroplasma corruscae EC-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14369

Type strain:

Species: Spiroplasma corruscae

Strain Designation: EC-1

Culture col. no.: DSM 19793, ATCC 43212

Strain history: <- J. Davis <- R. F. Whitcomb <- T. B. Clark; EC-1

NCBI tax ID(s): 216934 (species)

SI-ID 41711

ATCC 43212, DSM 19793

Section

Spiroplasma corruscae EC-1 is a microaerophile, mesophilic bacterium that was isolated from gut of adult Ellychnia corrusca.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Mycoplasmatota*
	Class	*Mollicutes*
	Order	*Mycoplasmatales*
	Family	*Spiroplasmataceae*
	Genus	*Spiroplasma*
	Species	**Spiroplasma corruscae**
	Full Scientific Name (LPSN)	Spiroplasma corruscae Hackett et al. 1996

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.998

[Ref.: #69480]	Motility	no Confidence in %91.856

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8322]

Culture medium

SP4-Z MEDIUM (DSMZ Medium 1076b)

[Ref.: #8322]

Culture medium growth

[Ref.: #8322]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8322]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8322]			growth	30 °C

[Ref.: #8322]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8322]

Oxygen tolerance

microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8322]	Sample type/isolated from	gut of adult Ellychnia corrusca
[Ref.: #8322]	Host species	Ellychnia corrusca
[Ref.: #8322]	Geographic location (country and/or sea, region)	Maryland
[Ref.: #8322]	Country	USA
[Ref.: #8322]	Country ISO 3 Code	USA
[Ref.: #8322]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY189128 (>99% sequence identity) for Spiroplasma from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples	105
Plant Samples	1
Total Samples	108

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8322]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8322]	Spiroplasma corruscae 16S ribosomal RNA gene, partial sequence	AY189128	1516	ENA	216934 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Spiroplasma corruscae EC-1	GCA_002237575	complete	GenBank	216934 tax ID	*
[Ref.: #66792]	Spiroplasma corruscae strain EC-1	216934.4	complete	PATRIC	216934 tax ID	*
[Ref.: #66792]	Spiroplasma corruscae strain EC-1	216934.3	complete	PATRIC	216934 tax ID	*
[Ref.: #66792]	Spiroplasma corruscae strain EC-1	216934.5	plasmid	PATRIC	216934 tax ID	*
[Ref.: #66792]	Spiroplasma corruscae EC-1	2791355056	complete	JGI IMG/M	216934 tax ID	*

[Ref.: #8322]

GC-content

26 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Spiroplasma corruscae EC-1 NCBI: GCA_002237575.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Spiroplasma corruscae EC-1 NCBI: GCA_002237575.1
[Ref.: #69480]	flagellated	no	98.246	no
[Ref.: #69480]	gram-positive	yes	72.283	no
[Ref.: #69480]	anaerobic	no	92.202	yes
[Ref.: #69480]	aerobic	no	97.675	yes
[Ref.: #69480]	halophile	yes	59.226	no
[Ref.: #69480]	spore-forming	no	97.674	no
[Ref.: #69480]	thermophile	no	94.037	no
[Ref.: #69480]	glucose-util	yes	91.423	no
[Ref.: #69480]	motile	no	92.07	no
[Ref.: #69480]	glucose-ferment	yes	77.788	no

Availability in culture collections External links

[Ref.: #8322]

Culture collection no.

DSM 19793, ATCC 43212

[Ref.: #83512]

SI-ID 41711

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Spiroplasma corruscae EC-1(T) (DSM 19793), a Bacterium Isolated from a Lampyrid Beetle (Ellychnia corrusca).	Tsai YM, Lo WS, Kuo CH	Genome Announc	10.1128/genomeA.00964-17	2017	*
Phylogeny	Spiroplasma corruscae sp. nov., from a firefly beetle (Coleoptera: Lampyridae) and tabanid flies (Diptera: Tabanidae).	Hackett KJ, Whitcomb RF, French FE, Tully JG, Gasparich GE, Rose DL, Carle P, Bove JM, Henegar RB, Clark TB, Konai M, Clark EA, Williamson DL	Int J Syst Bacteriol	10.1099/00207713-46-4-947	1996	*

References

#8322

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19793

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83512

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41711.1 )

* These data were automatically processed and therefore are not curated

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