Name: Eubacterium sulci CCUG 20560
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 143604

Type strain:

Species: Eubacterium sulci

Culture col. no.: CCUG 20560, ATCC 35585, KCTC 15025, VPI D45A.29A

Strain history: <- CCUG <- G Sundqvist, Umea, Sweden <- ATCC <- EP Cato <- WEC Moore

NCBI tax ID(s): 888727 (strain), 143393 (species)

SI-ID 41173

ATCC 35585, CCUG 20560

Special Collections

CCUG
KCTC

Section

Eubacterium sulci CCUG 20560 is an anaerobe, rod-shaped bacterium that was isolated from Human gingival sulcus.

rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Eubacteriaceae*
	Genus	*Eubacterium*
	Species	**Eubacterium sulci**
	Full Scientific Name (LPSN)	Eubacterium sulci (Cato et al. 1985) Jalava and Eerola 1999

Synonym

Fusobacterium sulci

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.471

[Ref.: #47154]

Incubation period

3 days

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67771]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #47154]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %91.932

[Ref.: #67771]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A, API rID32STR
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	hippurate ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68381]	lactose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	maltose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68381]	pullulan ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	raffinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sucrose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	trehalose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A, API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68381]		acetoin ChEBI	no	* from API rID32STR
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68381]		acetoin ChEBI	-		* from API rID32STR
[Ref.: #68380]		indole ChEBI		-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	-		* from API rID32STR
[Ref.: #68381]	alkaline phosphatase	-	3.1.3.1	* from API rID32STR, API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68381]	alpha-galactosidase	-	3.2.1.22	* from API rID32STR, API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68381]	arginine dihydrolase	-	3.5.3.6	* from API rID32STR, API rID32A
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR, API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68381]	beta-glucosidase	-	3.2.1.21	* from API rID32STR, API rID32A
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR, API rID32A
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68381]	glycyl tryptophan arylamidase	-		* from API rID32STR
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR, API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR, API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR, API rID32A
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #47154]

Fatty acid	Percentage	ECL
C15:0 ISO	31.9	14.621
C16:0	14	16
C17:1 ISO I/C16:0 DMA	9.7	16.481
C15:0 ANTEISO	6.7	14.711
C18:2 ω6,9c/C18:0 ANTE	5.4	17.724
C14:0 ISO 3OH	5.3	15.117
C14:0	4.2	14
unknown 14.966	3.9	14.966
unknown 18.177	3.3	18.177
C17:0 iso	3.2	16.629
C18:1 ω7c DMA	3	18.282
C18:1 ω9c	2	17.769
unknown 13.566	1.8	13.566
C17:0 anteiso	1.5	16.722
Unidentified	1.5	17.105
C18:0	1.3	18
C13:0 3OH/C15:1 i I/H	0.7	14.469
C14:0 2OH	0.7	15.205

Metadata FA analysis

Reference

[Ref.: #47154]

Fatty acid	Percentage	ECL
C15:0 ISO	51.3	14.621
C16:0	19.8	16
C15:0 ANTEISO	8.4	14.711
C17:0 iso	7.8	16.629
C18:2 ω6,9c/C18:0 ANTE	5.4	17.724
C14:0	4.4	14
C17:1 ISO I/C16:0 DMA	3	16.481

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #47154]	5091	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #47154]	2799	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #47154]	Sample type/isolated from	Human gingival sulcus

[Ref.: #67771]	Sample type/isolated from	From human gingival sulcus
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Gingiva
#Infection	#Patient	-
#Host Body-Site	#Other	#Wound

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_025289 (>99% sequence identity) for Clostridiales Family XIII. Incertae Sedis from Microbeatlas

Aquatic Samples	1208
Soil Samples	945
Animal Samples	80513
Plant Samples	454
Total Samples	83120

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Fusobacterium sulci 16S ribosomal RNA, partial	AJ006963	1453	GenBank ENA	888727 tax ID
[Ref.: #67771]	Eubacterium sulci ATCC 35585 16S ribosomal RNA, partial sequence	NR_025289	1453	GenBank ENA	888727 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Eubacterium sulci ATCC 35585	GCA_000526055	contig	GenBank ENA	888727 tax ID	*
[Ref.: #66792]	Eubacterium sulci ATCC 35585	888727.210	complete	PATRIC	888727 tax ID	*
[Ref.: #66792]	Eubacterium sulci ATCC 35585	888727.3	wgs	PATRIC	888727 tax ID	*
[Ref.: #66792]	Eubacterium sulci ATCC 35585	2558860286	draft	JGI IMG/M	888727 tax ID	*
[Ref.: #66792]	Eubacterium sulci ATCC 35585	2687453170	complete	JGI IMG/M	888727 tax ID	*
[Ref.: #66792]	Eubacterium sulci ATCC 35585	GCA_001189495	complete	GenBank ENA	888727 tax ID	*

[Ref.: #67771]

GC-content

39.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Eubacterium sulci ATCC 35585 PATRIC: 888727.210
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	70	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Eubacterium sulci ATCC 35585 PATRIC: 888727.210
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	57.904	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	91.932	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.16	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	69.645	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.03	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91.471	yes

Availability in culture collections External links

[Ref.: #47154]

Culture collection no.

CCUG 20560, ATCC 35585, KCTC 15025, VPI D45A.29A

[Ref.: #98949]

SI-ID 41173

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Antimicrobial activity of Streptococcus salivarius K12 on bacteria involved in oral malodour.	Masdea L, Kulik EM, Hauser-Gerspach I, Ramseier AM, Filippi A, Waltimo T	Arch Oral Biol	10.1016/j.archoralbio.2012.02.011	2012	*
Phylogeny	Phylogenetic analysis of Fusobacterium alocis and Fusobacterium sulci based on 16S rRNA gene sequences: proposal of Filifactor alocis (Cato, Moore and Moore) comb. nov. and Eubacterium sulci (Cato, Moore and Moore) comb. nov.	Jalava J, Eerola E	Int J Syst Bacteriol	10.1099/00207713-49-4-1375	1999	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#47154 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 20560

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68380

Automatically annotated from API rID32A .

#68381

Automatically annotated from API rID32STR .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#98949

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41173.1 )

* These data were automatically processed and therefore are not curated

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Eubacterium sulci ATCC 35585

Eubacterium sulci ATCC 35585

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