Bacteroides zoogleoformans (CCUG 20495, CIP 104479, ATCC 33285)

Name: Bacteroides zoogleoformans (CCUG 20495, CIP 104479, ATCC 33285)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 143590

Type strain

Culture col. no. CCUG 20495 CIP 104479 ATCC 33285 NCTC 13075 VPI D28K-1 2 more

NCBI tax ID(s) 28119

Special Collections CCUG JCM CIP

History JCM <-- CCUG 20495 <-- D. N. Love and J. Raus <-- ATCC 33285 <-- L. V. Holdeman VPI D28K-1.

Links

Bacteroides zoogleoformans CCUG 20495 is an anaerobe bacterium that was isolated from Human oral cavity.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 40428

ATCC 33285,CIP 104479,CCUG 20495,JCM 12260,NCTC 13075,JCM 16136

@ref 20215

Last LPSN update 2026-05-29 08:40:28

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Bacteroides

Species Bacteroides zoogleoformans

Full scientific name Bacteroides zoogleoformans (Weinberg et al. 1937) Cato et al. 1982

Synonyms (5)

Capsularis zoogleoformans
"Bacterium zoogleoformans"
Capsularis zoogleiformans
Prevotella zoogleoformans
"Bacterium zoogleiformans"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.109
125439	negative	98.981

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
47140	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
47140	anaerobe
125438	anaerobe	90.958
125439	obligate anaerobe	98.71

Spore formation

@ref	Spore formation	Confidence
125438		90.583
125439		99.953

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	+	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68380	alpha-fucosidase	+	3.2.1.51	from API rID32A
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68382	beta-galactosidase	+	3.2.1.23	from API zym
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	+		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	+		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
47140	-	+	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	+	-	+

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
47140	-	-	+	+	+	+	+	+	-	+	-	-	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	-
#Host Body-Site	#Oral cavity and airways	#Mouth

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
47140	Human oral cavity	Homo sapiens	Virginia	USA	USA	North America
67770	Gingival crevice

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM299843v1 assembly for Bacteroides zoogleoformans ATCC 33285	complete	GCA_002998435	28119.4	2802429456	28119	99.38
66792	ASM783071v1 assembly for Bacteroides zoogleoformans ATCC 33285	scaffold	GCA_007830715	28119.6	2596583692	28119	65.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Bacteroides zoogleoformans gene for 16S ribosomal RNA, partial sequence	AB626629	1489		28119
67770	Bacteroides zoogleoformans strain ATCC 33285 16S ribosomal RNA gene, partial sequence	L16488	1471		28119

GC content

@ref	GC-content (mol%)	Method
67770	47	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM299843v1 assembly for Bacteroides zoogleoformans ATCC 33285
BV-BRC: 28119.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.71	no
125439	gram_stain	BacteriaNetⓘ	negative	98.98	no
125439	motility	BacteriaNetⓘ	no	78.49	no
125439	spore_formation	BacteriaNetⓘ	no	99.95	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides zoogleoformans ATCC 33285
NCBI: GCA_002998435.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.11	no
125438	anaerobic	anaerobicⓘ	yes	90.96	yes
125438	aerobic	aerobicⓘ	no	94.30	yes
125438	spore-forming	spore-formingⓘ	no	90.58	no
125438	thermophilic	thermophileⓘ	no	96.68	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Comparison of Bacteroides zoogleoformans strains isolated from soft tissue infections in cats with strains from periodontal disease in humans.	Love DN, Johnson JL, Jones RF, Bailey M.	Infect Immun	10.1128/iai.47.1.166-168.1985	1985
Enzymology	Comparison of randomly cloned and whole genomic DNA probes for the detection of Porphyromonas gingivalis and Bacteroides forsythus.	Wong M, DiRienzo JM, Lai CH, Listgarten MA.	J Periodontal Res	10.1111/j.1600-0765.1996.tb00460.x	1996
	Intestinal bacteria associated with irritable bowel syndrome and chronic fatigue.	El-Salhy M.	Neurogastroenterol Motil	10.1111/nmo.14621	2023
	Comprehensive Analysis of Pathogen Diversity and Diagnostic Biomarkers in Patients with Suspected Pulmonary Tuberculosis Through Metagenomic Next-Generation Sequencing.	Li Y, Li C, Fang Y, Zhang L, Ying X, Ren R, Zang Y, Ying D, Zhu S, Liu J, Cao X.	Infect Drug Resist	10.2147/idr.s504587	2025
	Effects of clear aligners and traditional removable appliances on oral microbiome in mixed dentition: a comparative study.	Chen W, Chen J, Bai D, Wang P, Shu R.	BMC Oral Health	10.1186/s12903-024-05063-2	2024
	Gut microbiota, physical activity and/or metabolic markers in healthy individuals - towards new biomarkers of health.	Myhrstad MCW, Ruud E, Gaundal L, Gjovaag T, Rud I, Retterstol K, Ulven SM, Holven KB, Koehler K, Telle-Hansen VH.	Front Nutr	10.3389/fnut.2024.1438876	2024
	The gut microbiota in persistent post-operative pain following breast cancer surgery.	Masaud K, Collins JM, Rubio RC, Corrigan M, Cotter PD, O'Brien N, Bluett R, Jimenez CK, O'Mahony SM, Shorten GD.	Sci Rep	10.1038/s41598-024-62397-1	2024
	Gut Microbiota in Diagnosis, Therapy and Prognosis of Cholangiocarcinoma and Gallbladder Carcinoma-A Scoping Review.	Lederer AK, Rasel H, Kohnert E, Kreutz C, Huber R, Badr MT, Dellweg PKE, Bartsch F, Lang H.	Microorganisms	10.3390/microorganisms11092363	2023
Genetics	Unraveling the microbial diversity of bovine liver abscesses: isolation, identification, and genomic characterization of the Bacteroides found in hepatic lesions.	Gruninger RJ, McCormack ML, Chomistek NC, Zaheer R, McAllister TA.	Microbiol Spectr	10.1128/spectrum.00423-25	2025
	Gut microbiome is associated with the clinical response to anti-PD-1 based immunotherapy in hepatobiliary cancers.	Mao J, Wang D, Long J, Yang X, Lin J, Song Y, Xie F, Xun Z, Wang Y, Wang Y, Li Y, Sun H, Xue J, Song Y, Zuo B, Zhang J, Bian J, Zhang T, Yang X, Zhang L, Sang X, Zhao H.	J Immunother Cancer	10.1136/jitc-2021-003334	2021
	Nutrition and Chronobiology as Key Components of Multidisciplinary Therapeutic Interventions for Fibromyalgia and Associated Chronic Fatigue Syndrome: A Narrative and Critical Review.	Carrasco-Querol N, Cabricano-Canga L, Bueno Hernandez N, Goncalves AQ, Caballol Angelats R, Pozo Ariza M, Martin-Borras C, Monteso-Curto P, Castro Blanco E, Dalmau Llorca MR, Aguilar Martin C.	Nutrients	10.3390/nu16020182	2024
	Optimization of conditions for in vitro modeling of subgingival normobiosis and dysbiosis.	Baraniya D, Do T, Chen T, Albandar JM, Chialastri SM, Devine DA, Marsh PD, Al-Hebshi NN.	Front Microbiol	10.3389/fmicb.2022.1031029	2022
	Regional pattern and signatures of gut microbiota in rural residents with coronary heart disease: A metagenomic analysis.	Li W, Li H, Wang S, Han K, Liu Y, An Z, Wu H, Li J, Song J, Wu W.	Front Cell Infect Microbiol	10.3389/fcimb.2022.1007161	2022
	Faecal Microbial Markers and Psychobiological Disorders in Subjects with Morbid Obesity. A Cross-Sectional Study.	Farup PG, Valeur J.	Behav Sci (Basel)	10.3390/bs8100089	2018
Metabolism	Are Nonnutritive Sweeteners Obesogenic? Associations between Diet, Faecal Microbiota, and Short-Chain Fatty Acids in Morbidly Obese Subjects.	Farup PG, Lydersen S, Valeur J.	J Obes	10.1155/2019/4608315	2019
	The Immune Barrier of Porcine Uterine Mucosa Differs Dramatically at Proliferative and Secretory Phases and Could Be Positively Modulated by Colonizing Microbiota.	Han D, Sun P, Hu Y, Wang J, Hua G, Chen J, Shao C, Tian F, Darwish HYA, Tai Y, Yang X, Chang J, Ma Y.	Front Immunol	10.3389/fimmu.2021.750808	2021
Genetics	Metagenomic analysis of subgingival microbiota following non-surgical periodontal therapy: a pilot study.	Laksmana T, Kittichotirat W, Huang Y, Chen W, Jorgensen M, Bumgarner R, Chen C.	Open Dent J	10.2174/1874210601206010255	2012
	Refractory periodontitis: mixed infection with Bacteroides gingivalis and other unusual Bacteroides species. A case report.	Van Dyke TE, Offenbacher S, Place D, Dowell VR, Jones J.	J Periodontol	10.1902/jop.1988.59.3.184	1988
Phylogeny	Paraphocaeicola brunensis gen. nov., sp. nov., Carrying Two Variants of nimB Resistance Gene from Bacteroides fragilis, and Caecibacteroides pullorum gen. nov., sp. nov., Two Novel Genera Isolated from Chicken Caeca.	Kralova S, Davidova-Gerzova L, Valcek A, Bezdicek M, Rychlik I, Rezacova V, Cizek A	Microbiol Spectr	10.1128/spectrum.01954-21	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#47140	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 20495
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacteroides zoogleoformans (CCUG 20495, CIP 104479, ATCC 33285)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002998435

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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