Name: Spiroplasma floricola 23-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14355

Type strain:

Species: Spiroplasma floricola

Strain Designation: 23-6

Culture col. no.: DSM 21780, ATCC 29989

Strain history: <- J. K. Davis {2008} <- J. G. Tully <- ATCC <- R. E. Davis, USDA, Beltsville

NCBI tax ID(s): 1336749 (strain), 216937 (species)

SI-ID 44868

ATCC 29989

Section

Spiroplasma floricola 23-6 is a microaerophile, spore-forming, mesophilic bacterium that was isolated from tulip tree, Liriodendron tulipifera.

spore-forming
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Mycoplasmatota*
	Class	*Mollicutes*
	Order	*Mycoplasmatales*
	Family	*Spiroplasmataceae*
	Genus	*Spiroplasma*
	Species	**Spiroplasma floricola**
	Full Scientific Name (LPSN)	Spiroplasma floricola Davis et al. 1981

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.839

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15945]

Culture medium

SP4-Z MEDIUM (DSMZ Medium 1076b)

[Ref.: #15945]

Culture medium growth

[Ref.: #15945]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15945]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15945]			growth	30 °C

[Ref.: #15945]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15945]

Oxygen tolerance

microaerophile

[Ref.: #69481]	Ability of spore formation	yes Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15945]	Sample type/isolated from	tulip tree, Liriodendron tulipifera
[Ref.: #15945]	Host species	Liriodendron tulipifera
[Ref.: #15945]	Geographic location (country and/or sea, region)	Maryland
[Ref.: #15945]	Country	USA
[Ref.: #15945]	Country ISO 3 Code	USA
[Ref.: #15945]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Tree

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15945]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15945]	Spiroplasma floricola 16S ribosomal RNA gene, partial sequence	AY189131	1378	ENA	1336749 tax ID
[Ref.: #20218]	Spiroplasma floricola 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AY729931	935	ENA	216937 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Spiroplasma floricola 23-6	GCA_002813555	complete	GenBank	1336749 tax ID	*
[Ref.: #66792]	Spiroplasma floricola strain 23-6	216937.3	complete	PATRIC	216937 tax ID	*
[Ref.: #66792]	Spiroplasma floricola 23-6	2791355057	complete	JGI IMG/M	1336749 tax ID	*

[Ref.: #15945]

GC-content

25 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Spiroplasma floricola strain 23-6 PATRIC: 216937.3
[Ref.: #69481]	spore-forming	yes	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Spiroplasma floricola 23-6 23-6 NCBI: GCA_002813555.1
[Ref.: #69480]	flagellated	no	98.265	no
[Ref.: #69480]	gram-positive	yes	74.401	no
[Ref.: #69480]	anaerobic	no	96.967	no
[Ref.: #69480]	halophile	yes	69.994	no
[Ref.: #69480]	spore-forming	no	97.259	no
[Ref.: #69480]	thermophile	no	97.806	no
[Ref.: #69480]	glucose-util	yes	89.342	no
[Ref.: #69480]	aerobic	no	97.471	yes
[Ref.: #69480]	motile	no	91.171	no
[Ref.: #69480]	glucose-ferment	yes	77.39	no

Availability in culture collections External links

[Ref.: #15945]

Culture collection no.

DSM 21780, ATCC 29989

[Ref.: #83498]

SI-ID 44868

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Spiroplasma floricola 23-6(T) (ATCC 29989), a Bacterium Isolated from a Tulip Tree (Liriodendron tulipifera L.).	Tsai YM, Wu PS, Lo WS, Kuo CH	Genome Announc	10.1128/genomeA.00302-18	2018	*
Enzymology	The osmotic lysis of Spiroplasma cells and its use in enzyme studies.	Chen J, Chang CJ	Can J Microbiol	10.1139/m94-125	1994	*
Metabolism	Effect of nutrients and metabolic inhibitors on the growth of spiroplasmas.	Chang CJ, Garrett MG	Isr J Med Sci		1987	*
Cultivation	Chemically defined medium for cultivation of several epiphytic and phytopathogenic spiroplasmas.	Lee IM, Davis RE	Appl Environ Microbiol	10.1128/aem.46.6.1247-1251.1983	1983	*
Pathogenicity	In vitro susceptibility of spiroplasmas to heavy-metal salts.	Whitmore SC, Rissler JF, Davis RE	Antimicrob Agents Chemother	10.1128/AAC.23.1.22	1983	*

References

#15945

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21780

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83498

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44868.1 )

* These data were automatically processed and therefore are not curated

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Spiroplasma floricola strain 23-6

Spiroplasma floricola 23-6 23-6

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