Campylobacter concisus (CCUG 19995, LMG 7966)

Name: Campylobacter concisus (CCUG 19995, LMG 7966)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 143544

Type strain

Culture col. no. CCUG 19995 LMG 7966

NCBI tax ID(s) 199

Special Collections CCUG

Links

Campylobacter concisus CCUG 19995 is a bacterium that was isolated from Human feces,43-yr-old man.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 92179

LMG 7966,CCUG 19995

@ref 20215

Last LPSN update 2026-02-09 11:34:34

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter concisus

Full scientific name Campylobacter concisus Tanner et al. 1981

BacDive ID	Other strains from **Campylobacter concisus** (17)	Type strain
2119	C. concisus DSM 9716, ATCC 33237, CCUG 13144, DSM 5360, ... (type strain)
136482	C. concisus 29577M, CIP 106130, CCUG 20701, LMG 8263
142075	C. concisus CCUG 10376, LMG 7972
142762	C. concisus CCUG 14496, LMG 7961
142763	C. concisus CCUG 14497 A
143158	C. concisus CCUG 17580, LMG 7545, CCUG 17543
143350	C. concisus CCUG 18688, LMG 7963
143462	C. concisus CCUG 19393, LMG 7973
143476	C. concisus CCUG 19505, LMG 7965
143545	C. concisus CCUG 19996, LMG 7967
145785	C. concisus CCUG 29579
147159	C. concisus CCUG 32969
147165	C. concisus CCUG 32976
147552	C. concisus CCUG 33789
147553	C. concisus CCUG 33790
147838	C. concisus CCUG 34343
148071	C. concisus CCUG 34767

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	94.288

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	91.3

Spore formation

@ref	Spore formation	Confidence
125438		92.798
125439		97.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68373	30089 ChEBI	acetate	+	assimilation	from API CAM
68373	16947 ChEBI	citrate	-	assimilation	from API CAM
68373	17634 ChEBI	D-glucose	-	assimilation	from API CAM
68373	606565 ChEBI	hippurate	-	hydrolysis	from API CAM
68373	25115 ChEBI	malate	-	assimilation	from API CAM
68373	17632 ChEBI	nitrate	-	reduction	from API CAM
68373	17272 ChEBI	propionate	-	assimilation	from API CAM
68373	30031 ChEBI	succinate	+	assimilation	from API CAM
68373	78019 ChEBI	triphenyltetrazolium chloride	-	reduction	from API CAM
68373	16199 ChEBI	urea	-	hydrolysis	from API CAM

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
68373	474053	cefazolin	224 µg	from API CAM
68373	48923	erythromycin	14 µg	from API CAM
68373	100147	nalidixic acid	84 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68373	16136 ChEBI	hydrogen sulfide		from API CAM

Enzymes

@ref	Value	Activity	Ec
68373	alkaline phosphatase	-	3.1.3.1	from API CAM
68373	catalase	-	1.11.1.6	from API CAM
68373	esterase	+		from API CAM
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
68373	L-arginine arylamidase	-		from API CAM
68373	L-aspartate arylamidase	+	3.4.11.21	from API CAM
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
68373	urease	-	3.5.1.5	from API CAM

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
47086	-	-	+	-	-	-	-	-	+	-	+	-	+	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Male
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Infection	#Patient	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
47086	Human feces,43-yr-old man	1987-01-13	Örebro	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM216581v1 assembly for Campylobacter concisus CCUG 19995	contig	GCA_002165815	199.587	8059766148	199	70

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter concisus CCUG 19995
NCBI: GCA_002165815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.10	no
125439	motility	BacteriaNetⓘ	no	70.80	no
125439	gram_stain	BacteriaNetⓘ	negative	89.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	91.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter concisus strain CCUG 19995
PATRIC: 199.587

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.29	no
125438	anaerobic	anaerobicⓘ	no	54.74	no
125438	spore-forming	spore-formingⓘ	no	92.80	no
125438	aerobic	aerobicⓘ	no	92.99	no
125438	thermophilic	thermophileⓘ	no	87.34	no
125438	flagellated	motile2+ⓘ	yes	61.82	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Complete Genome Sequence of Campylobacter concisus ATCC 33237^T and Draft Genome Sequences for an Additional Eight Well-Characterized C. concisus Strains.	Cornelius AJ, Miller WG, Lastovica AJ, On SLW, French NP, Vandenberg O, Biggs PJ.	Genome Announc	10.1128/genomea.00711-17	2017
Enzymology	Campylobacter concisus - A new player in intestinal disease.	Kaakoush NO, Mitchell HM.	Front Cell Infect Microbiol	10.3389/fcimb.2012.00004	2012
Phylogeny	Delineation of Campylobacter concisus genomospecies by amplified fragment length polymorphism analysis and correlation of results with clinical data.	Aabenhus R, On SL, Siemer BL, Permin H, Andersen LP.	J Clin Microbiol	10.1128/jcm.43.10.5091-5096.2005	2005
Phylogeny	Molecular identification of Campylobacter concisus.	Matsheka MI, Lastovica AJ, Elisha BG.	J Clin Microbiol	10.1128/jcm.39.10.3684-3689.2001	2001
Phylogeny	Identification of EF group 22 campylobacters from gastroenteritis cases as Campylobacter concisus.	Vandamme P, Falsen E, Pot B, Hoste B, Kersters K, De Ley J.	J Clin Microbiol	10.1128/jcm.27.8.1775-1781.1989	1989
Phylogeny	Genetic characterisation of Campylobacter concisus: Strategies for improved genomospecies discrimination.	Cornelius AJ, Huq M, On SLW, French NP, Vandenberg O, Miller WG, Lastovica AJ, Istivan T, Biggs PJ	Syst Appl Microbiol	10.1016/j.syapm.2021.126187	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#47086	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 19995
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68373	Automatically annotated from API CAM .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter concisus (CCUG 19995, LMG 7966)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API CAM

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002165815

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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