Name: Spiroplasma culicicola AES-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14354

Type strain:

Species: Spiroplasma culicicola

Strain Designation: AES-1

Culture col. no.: DSM 19754, ATCC 35112

Strain history: <- J. Davis <- R. F. Whitcomb <- T. A. Chen; AES-1

NCBI tax ID(s): 1276246 (strain), 216935 (species)

SI-ID 40876

ATCC 35112, DSM 19754

Section

Spiroplasma culicicola AES-1 is a microaerophile, mesophilic bacterium that was isolated from salt marsh mosquito.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Mycoplasmatota*
	Class	*Mollicutes*
	Order	*Mycoplasmatales*
	Family	*Spiroplasmataceae*
	Genus	*Spiroplasma*
	Species	**Spiroplasma culicicola**
	Full Scientific Name (LPSN)	Spiroplasma culicicola Hung et al. 1987

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8294]

Culture medium

SP4-Z MEDIUM (DSMZ Medium 1076b)

[Ref.: #8294]

Culture medium growth

[Ref.: #8294]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8294]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8294]			growth	30 °C

[Ref.: #8294]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8294]

Oxygen tolerance

microaerophile

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	77.27	17 of 22
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	66.67	2 of 3
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	NAD metabolism	55.56	10 of 18
[Ref.: #66794]	oxidative phosphorylation	52.75	48 of 91
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	acetate fermentation	50	2 of 4
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	purine metabolism	45.74	43 of 94
[Ref.: #66794]	serine metabolism	44.44	4 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	44.44	4 of 9
[Ref.: #66794]	pyrimidine metabolism	42.22	19 of 45
[Ref.: #66794]	methylglyoxal degradation	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	vitamin B1 metabolism	38.46	5 of 13
[Ref.: #66794]	gluconeogenesis	37.5	3 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	37.5	3 of 8
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	pentose phosphate pathway	36.36	4 of 11
[Ref.: #66794]	lipid metabolism	35.48	11 of 31
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	formaldehyde oxidation	33.33	1 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	acetoin degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	glutamate and glutamine metabolism	32.14	9 of 28
[Ref.: #66794]	degradation of sugar alcohols	31.25	5 of 16
[Ref.: #66794]	methionine metabolism	30.77	8 of 26
[Ref.: #66794]	phenylalanine metabolism	30.77	4 of 13
[Ref.: #66794]	isoprenoid biosynthesis	30.77	8 of 26
[Ref.: #66794]	propanol degradation	28.57	2 of 7
[Ref.: #66794]	glutathione metabolism	28.57	4 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	28.57	2 of 7
[Ref.: #66794]	tyrosine metabolism	28.57	4 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	28.57	4 of 14
[Ref.: #66794]	flavin biosynthesis	26.67	4 of 15
[Ref.: #66794]	non-pathway related	26.32	10 of 38
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	25	3 of 12
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	25	2 of 8
[Ref.: #66794]	alanine metabolism	24.14	7 of 29
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	lipid A biosynthesis	22.22	2 of 9
[Ref.: #66794]	cysteine metabolism	22.22	4 of 18
[Ref.: #66794]	citric acid cycle	21.43	3 of 14
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8294]	Sample type/isolated from	salt marsh mosquito
[Ref.: #8294]	Country	USA
[Ref.: #8294]	Country ISO 3 Code	USA
[Ref.: #8294]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Salt marsh
#Host	#Arthropoda	#Insecta

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY189129 (>99% sequence identity) for Spiroplasma culicicola from Microbeatlas

Aquatic Samples
Soil Samples
Animal Samples	2
Plant Samples
Total Samples	2

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8294]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8294]	Spiroplasma culicicola 16S ribosomal RNA gene, partial sequence	AY189129	1515	ENA	1276246 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Spiroplasma culicicola AES-1	GCA_000565175	complete	GenBank	1276246 tax ID	*
[Ref.: #66792]	Spiroplasma culicicola AES-1	1276246.3	complete	PATRIC	1276246 tax ID	*
[Ref.: #66792]	Spiroplasma culicicola AES-1	2558860239	complete	JGI IMG/M	1276246 tax ID	*

[Ref.: #8294]

GC-content

26 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Spiroplasma culicicola AES-1 AES-1 NCBI: GCA_000565175.1
[Ref.: #69480]	motile	no	91.312	no
[Ref.: #69480]	flagellated	no	97.97	no
[Ref.: #69480]	gram-positive	yes	73.23	no
[Ref.: #69480]	anaerobic	no	95.784	no
[Ref.: #69480]	halophile	yes	64.773	no
[Ref.: #69480]	spore-forming	no	97.07	no
[Ref.: #69480]	thermophile	no	96.346	yes
[Ref.: #69480]	glucose-util	yes	91.719	no
[Ref.: #69480]	aerobic	no	97.513	yes
[Ref.: #69480]	glucose-ferment	yes	79.095	no

Availability in culture collections External links

[Ref.: #8294]

Culture collection no.

DSM 19754, ATCC 35112

[Ref.: #83497]

SI-ID 40876

References

#8294

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19754

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83497

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40876.1 )

* These data were automatically processed and therefore are not curated

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Spiroplasma culicicola AES-1 AES-1

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