Helicobacter cinaedi (CCUG 19504, LMG 8779, LMG 9072)

Name: Helicobacter cinaedi (CCUG 19504, LMG 8779, LMG 9072)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 143475

Type strain

Culture col. no. CCUG 19504 LMG 8779 LMG 9072

NCBI tax ID(s) 213

Special Collections CCUG

Links

Helicobacter cinaedi CCUG 19504 is a bacterium that was isolated from Human blood,2-yr-old child,monoarticular arthritis.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 92180

LMG 9072,CCUG 19504,LMG 8779

@ref 20215

Last LPSN update 2026-02-09 11:34:32

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Helicobacteraceae

Genus Helicobacter

Species Helicobacter cinaedi

Full scientific name Helicobacter cinaedi (Totten et al. 1988) Vandamme et al. 1991

Synonyms (1)

Campylobacter cinaedi

BacDive ID	Other strains from **Helicobacter cinaedi** (15)	Type strain
6098	H. cinaedi Fennel 165, DSM 5359, ATCC 35683, CCUG 18818, ... (type strain)
138200	H. cinaedi CIP 105344, CCUG 46353
138205	H. cinaedi B1205, CIP 105369, CCUG 15432, LMG 8559
138206	H. cinaedi 86-8853, CIP 105370, CCUG 19503, LMG 8778, ...
143202	H. cinaedi CCUG 17733, LMG 6729, LMG 8558
143385	H. cinaedi CCUG 18819, LMG 7544, LMG 9071
143450	H. cinaedi CCUG 19218, LMG 8770
143642	H. cinaedi CCUG 20698, CCUG 19562, NCTC 11960, LMG 9153
147562	H. cinaedi CCUG 33804, ATCC 51800
149115	H. cinaedi CCUG 36876
149901	H. cinaedi CCUG 38648
150501	H. cinaedi CCUG 41437
151238	H. cinaedi CCUG 43521
151239	H. cinaedi CCUG 43522
151726	H. cinaedi CCUG 44719

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.955
125439	negative	95.5

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	91.3

Spore formation

@ref	Spore formation	Confidence
125438		94.108
125439		98.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68373	30089 ChEBI	acetate	-	assimilation	from API CAM
68373	16947 ChEBI	citrate	-	assimilation	from API CAM
68373	17634 ChEBI	D-glucose	-	assimilation	from API CAM
68373	606565 ChEBI	hippurate	-	hydrolysis	from API CAM
68373	25115 ChEBI	malate	-	assimilation	from API CAM
68373	17632 ChEBI	nitrate	-	reduction	from API CAM
68373	17272 ChEBI	propionate	-	assimilation	from API CAM
68373	30031 ChEBI	succinate	-	assimilation	from API CAM
68373	78019 ChEBI	triphenyltetrazolium chloride	-	reduction	from API CAM
68373	16199 ChEBI	urea	-	hydrolysis	from API CAM

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
68373	474053	cefazolin	224 µg	from API CAM
68373	48923	erythromycin	14 µg	from API CAM
68373	100147	nalidixic acid	84 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68373	16136 ChEBI	hydrogen sulfide		from API CAM

Enzymes

@ref	Value	Activity	Ec
68373	alkaline phosphatase	-	3.1.3.1	from API CAM
68373	catalase	-	1.11.1.6	from API CAM
68373	esterase	-		from API CAM
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
68373	L-arginine arylamidase	-		from API CAM
68373	L-aspartate arylamidase	-	3.4.11.21	from API CAM
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
68373	urease	-	3.5.1.5	from API CAM

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
47011	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Blood
#Infection	#Inflammation	-
#Infection	#Patient	-
#Host	#Human	#Child

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
47011	Human blood,2-yr-old child,monoarticular arthritis	1986	Ottawa	Canada	CAN	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM321639v1 assembly for Helicobacter cinaedi CCUG19504	contig	GCA_003216395	213.47	8038052198	213	38.23

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Helicobacter cinaedi CCUG19504
NCBI: GCA_003216395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.10	no
125439	motility	BacteriaNetⓘ	no	76.30	no
125439	gram_stain	BacteriaNetⓘ	negative	95.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	91.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Helicobacter cinaedi strain CCUG19504
PATRIC: 213.47

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.96	no
125438	anaerobic	anaerobicⓘ	no	74.50	no
125438	spore-forming	spore-formingⓘ	no	94.11	no
125438	aerobic	aerobicⓘ	no	83.66	no
125438	thermophilic	thermophileⓘ	no	81.74	no
125438	flagellated	motile2+ⓘ	yes	66.96	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Diversity and microevolution of CRISPR loci in Helicobacter cinaedi.	Tomida J, Morita Y, Shibayama K, Kikuchi K, Sawa T, Akaike T, Kawamura Y.	PLoS One	10.1371/journal.pone.0186241	2017
Phylogeny	Misidentifying helicobacters: the Helicobacter cinaedi example.	Vandamme P, Harrington CS, Jalava K, On SL.	J Clin Microbiol	10.1128/jcm.38.6.2261-2266.2000	2000
Pathogenicity	Simultaneous identification of campylobacters and prediction of quinolone resistance by comparative sequence analysis.	Husmann M, Feddersen A, Steitz A, Freytag C, Bhakdi S.	J Clin Microbiol	10.1128/jcm.35.9.2398-2400.1997	1997
Pathogenicity	Rapid detection, by PCR and reverse hybridization, of mutations in the Helicobacter pylori 23S rRNA gene, associated with macrolide resistance.	van Doorn LJ, Debets-Ossenkopp YJ, Marais A, Sanna R, Megraud F, Kusters JG, Quint WG.	Antimicrob Agents Chemother	10.1128/aac.43.7.1779	1999

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#47011	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 19504
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68373	Automatically annotated from API CAM .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Helicobacter cinaedi (CCUG 19504, LMG 8779, LMG 9072)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API CAM

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003216395

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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