Treponema parvum (DSM 16260, ATCC 700770, OMZ 833)

Name: Treponema parvum (DSM 16260, ATCC 700770, OMZ 833)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14347

Type strain

Strain Designation FO2FA

Culture col. no. DSM 16260 ATCC 700770 OMZ 833 FO2FA

NCBI tax ID(s) 1125711 138851

Special Collections DSMZ

History DSMZ <- C. Wyss; OMZ833

Links

Treponema parvum FO2FA is an anaerobe bacterium that was isolated from patient with periodontitis.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 44127

ATCC 700770,DSM 16260

@ref 20215

Last LPSN update 2026-05-29 08:28:16

Domain Bacteria

Phylum Spirochaetota

Class Spirochaetia

Order Spirochaetales

Family Treponemataceae

Genus Treponema

Species Treponema parvum

Full scientific name Treponema parvum Wyss et al. 2001

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.435

Colony morphology

6264

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6264	OMIZ-PAT (DSMZ Medium 1494)		Medium recipe at MediaDive	Name: . OMIZ-PAT Medium (modified) (DSMZ Medium 1494) Composition: (NH4)6Mo7O24 x 4 H2O 12.4 g/l Yeast extract 3.0 g/l Fe SO4 x 7 H2O 2.78015 g/l D-Glucose 2.0 g/l D-Mannose 2.0 g/l D-Arabinose 2.0 g/l L-Fucose 2.0 g/l D-Trehalose 2.0 g/l D-Sucrose 2.0 g/l L-Rhamnose 2.0 g/l NH4Cl 1.6 g/l Glutathione 1.5366 g/l Ascorbic acid 1.0 g/l NaHCO3 1.0 g/l Ethanol 1.0 g/l KCl 0.968 g/l D-Maltose 0.8 g/l D-glucuronic acid 0.8 g/l D-Mannitol 0.8 g/l D-galacturonic acid 0.8 g/l D-Fructose 0.8 g/l L-Glutamine 0.68 g/l L-Histidine 0.62 g/l NaVO3 0.61 g/l D 0.56 g/l Pyruvic acid 0.55 g/l L-Serine 0.525 g/l Fumaric acid 0.5 g/l HCl 0.3646 g/l L-Cysteine HCl 0.35 g/l L-Glutamic acid 0.3 g/l Formic acid 0.3 g/l ZnSO4 x 7 H2O 0.287 g/l MgSO4 x 7 H2O 0.25 g/l DL-carnitine 0.2 g/l N-Acetylglucosamine 0.2 g/l Citric acid 0.2 g/l L-Lysine HCl 0.182 g/l L-Arginine 0.175 g/l L-Ornithine HCl 0.17 g/l L-Phenylalanine 0.165 g/l CaCl2 x H2O 0.15 g/l L-Methionine 0.15 g/l L-Asparagine 0.15 g/l NaH2PO4 x H2O 0.14 g/l L-Leucine 0.131 g/l L-Isoleucine 0.131 g/l NiSO4 x 6 H2O 0.131 g/l L-Threonine 0.12 g/l L-Aspartic acid 0.118 g/l SnCl2 x 2 H2O 0.118 g/l L-Valine 0.117 g/l L-Proline 0.115 g/l L-Tryptophan 0.102 g/l Nicotinic acid 0.1 g/l Folinic acid 0.1 g/l L-Tyrosine 0.09 g/l NaOH 0.079994 g/l Glycine 0.075 g/l Nicotinamide 0.05 g/l Folic acid 0.05 g/l D-(+)-biotin 0.05 g/l Vitamine B12 0.05 g/l Choline chloride 0.05 g/l Myo-inositol 0.05 g/l L-Alanine 0.045 g/l Hemin 0.026076 g/l N-acetylmuramic acid 0.025 g/l Na2SeO3 0.0173 g/l MnSO4 x H2O 0.0169 g/l Riboflavine 0.01 g/l 2-Mercaptoethanesulfonic acid 0.01 g/l Phenol red 0.01 g/l Putrescine 2 HCl 0.005 g/l Pyridoxal hydrochloride 0.005 g/l Pyridoxal phosphate 0.005 g/l Calcium D-(+)-pantothenate 0.005 g/l Thiamine HCl 0.005 g/l Thiamin pyrophosphate 0.005 g/l Thymidine 0.0024 g/l N-(2-acetamido)-2-aminoethanesulfonic acid 0.0018 g/l Hypoxanthine 0.0014 g/l Uracil 0.0011 g/l Flavin adenine dinucleotide 0.001 g/l ß-nicotinamide adenine dinucleotide 0.001 g/l Coenzym A 0.001 g/l CuSO4 0.000789 g/l Cholesterol Asialofetuin 2-Mercaptoethanol Isovaleric acid Valeric acid 2-Methylbutyric acid Isobutyric acid DL-alpha-lipoic acid Rabbit serum Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6264	positive	growth	33-37

Physiology and metabolism

Oxygen tolerance

6264

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.929

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Inflammation	-
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	#Gingiva

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
6264	patient with periodontitis	Homo sapiens	Zürich	Switzerland	CHE	Europe

Taxonmaps

69479

Global distribution of 16S sequence AF302937 (>99% sequence identity) for Treponema parvum subclade from Microbeatlas

Aquatic Samples	72
Soil Samples	125
Animal Samples	5310
Plant Samples	59
Total Samples	5566

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6264	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1789396v1 assembly for Treponema parvum ATCC 700770	complete	GCA_017893965	138851.4	2996070510	138851	97.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6264	Treponema parvum OMZ833 16S ribosomal RNA gene, partial sequence	AF302937	1485		1125711

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1789396v1 assembly for Treponema parvum ATCC 700770
BV-BRC: 138851.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	61.31	no
125439	gram_stain	BacteriaNetⓘ	negative	99.44	no
125439	motility	BacteriaNetⓘ	no	76.52	no
125439	spore_formation	BacteriaNetⓘ	no	99.93	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Treponema parvum ATCC 700770
NCBI: GCA_017893965.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	82.70	no
125438	anaerobic	anaerobicⓘ	yes	85.58	no
125438	aerobic	aerobicⓘ	no	95.54	yes
125438	spore-forming	spore-formingⓘ	no	78.80	no
125438	thermophilic	thermophileⓘ	no	82.56	no
125438	flagellated	motile2+ⓘ	yes	58.34	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Diversity of Treponema denticola and Other Oral Treponeme Lineages in Subjects with Periodontitis and Gingivitis.	Zeng H, Chan Y, Gao W, Leung WK, Watt RM.	Microbiol Spectr	10.1128/spectrum.00701-21	2021
	PP1 phosphatase controls both daughter cell formation and amylopectin levels in Toxoplasma gondii.	Khelifa AS, Bhaskaran M, Boissavy T, Mouveaux T, Silva TA, Chhuon C, Attias M, Guerrera IC, De Souza W, Dauvillee D, Roger E, Gissot M.	PLoS Biol	10.1371/journal.pbio.3002791	2024
Genetics	Complete Genome Sequences of Three Human Oral Treponema parvum Isolates.	Zeng H, Watt RM	Microbiol Resour Announc	10.1128/MRA.00394-21	2021
Phylogeny	Treponema berlinense sp. nov. and Treponema porcinum sp. nov., novel spirochaetes isolated from porcine faeces.	Nordhoff M, Taras D, Macha M, Tedin K, Busse HJ, Wieler LH	Int J Syst Evol Microbiol	10.1099/ijs.0.63388-0	2005
Phylogeny	Treponema parvum sp. nov., a small, glucoronic or galacturonic acid-dependent oral spirochaete from lesions of human periodontitis and acute necrotizing ulcerative gingivitis.	Wyss C, Dewhirst FE, Gmur R, Thurnheer T, Xue Y, Schupbach P, Guggenheim B, Paster BJ	Int J Syst Evol Microbiol	10.1099/00207713-51-3-955	2001

References

#6264	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16260
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Treponema parvum (DSM 16260, ATCC 700770, OMZ 833)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_017893965

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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