Name: Treponema parvum FO2FA
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14347

Type strain:

Species: Treponema parvum

Strain Designation: FO2FA

Culture col. no.: DSM 16260, ATCC 700770, OMZ 833

Strain history: <- C. Wyss; OMZ833

NCBI tax ID(s): 1125711 (strain), 138851 (species)

SI-ID 44127

ATCC 700770, DSM 16260

Section

Treponema parvum FO2FA is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from patient with periodontitis.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Treponemataceae*
	Genus	*Treponema*
	Species	**Treponema parvum**
	Full Scientific Name (LPSN)	Treponema parvum Wyss et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.969

[Ref.: #6264]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6264]

Culture medium

OMIZ-PAT (DSMZ Medium 1494)

[Ref.: #6264]

Culture medium growth

[Ref.: #6264]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6264]

Culture medium composition

expand / minimize

Name: . OMIZ-PAT Medium (modified) (DSMZ Medium 1494)
Composition:
(NH4)6Mo7O24 x 4 H2O 12.4 g/l
Yeast extract 3.0 g/l
Fe SO4 x 7 H2O 2.78015 g/l
D-Glucose 2.0 g/l
D-Mannose 2.0 g/l
D-Arabinose 2.0 g/l
L-Fucose 2.0 g/l
D-Trehalose 2.0 g/l
D-Sucrose 2.0 g/l
L-Rhamnose 2.0 g/l
NH4Cl 1.6 g/l
Glutathione 1.5366 g/l
Ascorbic acid 1.0 g/l
NaHCO3 1.0 g/l
Ethanol 1.0 g/l
KCl 0.968 g/l
D-Maltose 0.8 g/l
D-glucuronic acid 0.8 g/l
D-Mannitol 0.8 g/l
D-galacturonic acid 0.8 g/l
D-Fructose 0.8 g/l
L-Glutamine 0.68 g/l
L-Histidine 0.62 g/l
NaVO3 0.61 g/l
D 0.56 g/l
Pyruvic acid 0.55 g/l
L-Serine 0.525 g/l
Fumaric acid 0.5 g/l
HCl 0.3646 g/l
L-Cysteine HCl 0.35 g/l
L-Glutamic acid 0.3 g/l
Formic acid 0.3 g/l
ZnSO4 x 7 H2O 0.287 g/l
MgSO4 x 7 H2O 0.25 g/l
DL-carnitine 0.2 g/l
N-Acetylglucosamine 0.2 g/l
Citric acid 0.2 g/l
L-Lysine HCl 0.182 g/l
L-Arginine 0.175 g/l
L-Ornithine HCl 0.17 g/l
L-Phenylalanine 0.165 g/l
CaCl2 x H2O 0.15 g/l
L-Methionine 0.15 g/l
L-Asparagine 0.15 g/l
NaH2PO4 x H2O 0.14 g/l
L-Leucine 0.131 g/l
L-Isoleucine 0.131 g/l
NiSO4 x 6 H2O 0.131 g/l
L-Threonine 0.12 g/l
L-Aspartic acid 0.118 g/l
SnCl2 x 2 H2O 0.118 g/l
L-Valine 0.117 g/l
L-Proline 0.115 g/l
L-Tryptophan 0.102 g/l
Nicotinic acid 0.1 g/l
Folinic acid 0.1 g/l
L-Tyrosine 0.09 g/l
NaOH 0.079994 g/l
Glycine 0.075 g/l
Nicotinamide 0.05 g/l
Folic acid 0.05 g/l
D-(+)-biotin 0.05 g/l
Vitamine B12 0.05 g/l
Choline chloride 0.05 g/l
Myo-inositol 0.05 g/l
L-Alanine 0.045 g/l
Hemin 0.026076 g/l
N-acetylmuramic acid 0.025 g/l
Na2SeO3 0.0173 g/l
MnSO4 x H2O 0.0169 g/l
Riboflavine 0.01 g/l
2-Mercaptoethanesulfonic acid 0.01 g/l
Phenol red 0.01 g/l
Putrescine 2 HCl 0.005 g/l
Pyridoxal hydrochloride 0.005 g/l
Pyridoxal phosphate 0.005 g/l
Calcium D-(+)-pantothenate 0.005 g/l
Thiamine HCl 0.005 g/l
Thiamin pyrophosphate 0.005 g/l
Thymidine 0.0024 g/l
N-(2-acetamido)-2-aminoethanesulfonic acid 0.0018 g/l
Hypoxanthine 0.0014 g/l
Uracil 0.0011 g/l
Flavin adenine dinucleotide 0.001 g/l
ß-nicotinamide adenine dinucleotide 0.001 g/l
Coenzym A 0.001 g/l
CuSO4 0.000789 g/l
Cholesterol
Asialofetuin
2-Mercaptoethanol
Isovaleric acid
Valeric acid
2-Methylbutyric acid
Isobutyric acid
DL-alpha-lipoic acid
Rabbit serum
Distilled water

	Temperatures	Kind of temperature		Temperature
[Ref.: #6264]			growth	33-37 °C

[Ref.: #6264]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6264]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.717

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6264]	Sample type/isolated from	patient with periodontitis
[Ref.: #6264]	Geographic location (country and/or sea, region)	Zürich
[Ref.: #6264]	Country	Switzerland
[Ref.: #6264]	Country ISO 3 Code	CHE
[Ref.: #6264]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	#Gingiva

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF302937 (>99% sequence identity) for Treponema parvum subclade from Microbeatlas

Aquatic Samples	72
Soil Samples	125
Animal Samples	5310
Plant Samples	59
Total Samples	5566

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6264]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6264]	Treponema parvum OMZ833 16S ribosomal RNA gene, partial sequence	AF302937	1485	ENA	1125711 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Treponema parvum ATCC 700770	GCA_017893965	complete	GenBank	138851 tax ID	*
[Ref.: #66792]	Treponema parvum strain ATCC 700770	138851.4	complete	PATRIC	138851 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Treponema parvum ATCC 700770 NCBI: GCA_017893965.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Treponema parvum ATCC 700770 NCBI: GCA_017893965.1
[Ref.: #69480]	motile	yes	78.206	no
[Ref.: #69480]	flagellated	no	85.882	no
[Ref.: #69480]	gram-positive	no	94.185	no
[Ref.: #69480]	anaerobic	yes	99.251	no
[Ref.: #69480]	aerobic	no	98.56	yes
[Ref.: #69480]	halophile	no	79.662	no
[Ref.: #69480]	spore-forming	no	94.42	no
[Ref.: #69480]	thermophile	no	87.526	yes
[Ref.: #69480]	glucose-util	yes	79.879	no
[Ref.: #69480]	glucose-ferment	yes	67.679	no

Availability in culture collections External links

[Ref.: #6264]

Culture collection no.

DSM 16260, ATCC 700770, OMZ 833

[Ref.: #83491]

SI-ID 44127

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequences of Three Human Oral Treponema parvum Isolates.	Zeng H, Watt RM	Microbiol Resour Announc	10.1128/MRA.00394-21	2021	*
Phylogeny	Treponema berlinense sp. nov. and Treponema porcinum sp. nov., novel spirochaetes isolated from porcine faeces.	Nordhoff M, Taras D, Macha M, Tedin K, Busse HJ, Wieler LH	Int J Syst Evol Microbiol	10.1099/ijs.0.63388-0	2005	*
Phylogeny	Treponema parvum sp. nov., a small, glucoronic or galacturonic acid-dependent oral spirochaete from lesions of human periodontitis and acute necrotizing ulcerative gingivitis.	Wyss C, Dewhirst FE, Gmur R, Thurnheer T, Xue Y, Schupbach P, Guggenheim B, Paster BJ	Int J Syst Evol Microbiol	10.1099/00207713-51-3-955	2001	*

References

#6264

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16260

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83491

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44127.1 )

* These data were automatically processed and therefore are not curated

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Treponema parvum ATCC 700770

Treponema parvum ATCC 700770

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