Name: Spirochaeta cellobiosiphila DSM 17781
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14337

Type strain:

Species: Spirochaeta cellobiosiphila

Culture col. no.: DSM 17781, ATCC BAA-1285, SIP 1

Strain history: <- J. A. Breznak, Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, USA; SIP 1 <- J. A. Breznak {2004}

NCBI tax ID(s): 1123275 (strain), 504483 (species)

SI-ID 298296

ATCC BAA-1285, DSM 17781

Section

Spirochaeta cellobiosiphila DSM 17781 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from interstitial water of a cyanobacteria-containing microbial mat.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Spirochaetaceae*
	Genus	*Spirochaeta*
	Species	**Spirochaeta cellobiosiphila**
	Full Scientific Name (LPSN)	Spirochaeta cellobiosiphila Breznak and Warnecke 2008

Information on morphological and physiological properties Morphology

[Ref.: #31205]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.9

[Ref.: #31205]	Cell length	10-12 µm

[Ref.: #31205]	Cell width	0.3-0.4 µm

[Ref.: #31205]	Cell shape	rod-shaped

[Ref.: #31205]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.234

[Ref.: #31205]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7185]

Culture medium

SPIROCHAETA CELLOBIOSIPHILA MEDIUM (DSMZ Medium 1188)

[Ref.: #7185]

Culture medium growth

[Ref.: #7185]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7185]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7185]	growth	30 °C
[Ref.: #31205]	growth	09-37 °C
[Ref.: #31205]	optimum	37 °C

[Ref.: #7185]	Temperature range	mesophilic
[Ref.: #31205]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31205]			optimum	7.5
[Ref.: #31205]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7185]	Oxygen tolerance	anaerobe
[Ref.: #31205]	Oxygen tolerance	facultative anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.043

[Ref.: #31205]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.828

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31205]		NaCl		growth	0.58-5.8	%
[Ref.: #31205]		NaCl		optimum	1.74-2.32	%

[Ref.: #31205]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31205]	mannose ChEBI	+	carbon source
[Ref.: #31205]	sucrose ChEBI	+	carbon source
[Ref.: #31205]	xylose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7185]	Sample type/isolated from	interstitial water of a cyanobacteria-containing microbial mat
[Ref.: #7185]	Geographic location (country and/or sea, region)	Massachusetts, Woods Hole, Little Sippewissett salt marsh
[Ref.: #7185]	Country	USA
[Ref.: #7185]	Country ISO 3 Code	USA
[Ref.: #7185]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Salt marsh
#Environmental	#Microbial community	#Microbial mat
#Host	#Microbial	#Bacteria

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU448140 (>99% sequence identity) for Spirochaeta cellobiosiphila subclade from Microbeatlas

Aquatic Samples	914
Soil Samples	45
Animal Samples	34
Plant Samples	30
Total Samples	1023

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7185]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7185]	Spirochaeta cellobiosiphila strain SIP1 16S ribosomal RNA gene, partial sequence	EU448140	1435	ENA	504483 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Spirochaeta cellobiosiphila DSM 17781	GCA_000426705	scaffold	GenBank	1123275 tax ID	*
[Ref.: #66792]	Spirochaeta cellobiosiphila DSM 17781	1123275.4	wgs	PATRIC	1123275 tax ID	*
[Ref.: #66792]	Spirochaeta cellobiosiphila DSM 17781	2526164518	draft	JGI IMG/M	1123275 tax ID	*

[Ref.: #7185]	GC-content	41.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31205]	GC-content	41.4 mol%
[Ref.: #7185]	GC-content	37.0 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Spirochaeta cellobiosiphila DSM 17781 DSM 17781 NCBI: GCA_000426705.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Spirochaeta cellobiosiphila DSM 17781 DSM 17781 NCBI: GCA_000426705.1
[Ref.: #69480]	motile	yes	83.488	no
[Ref.: #69480]	flagellated	no	65.167	no
[Ref.: #69480]	gram-positive	no	94.241	yes
[Ref.: #69480]	anaerobic	yes	86.758	no
[Ref.: #69480]	aerobic	no	94.778	yes
[Ref.: #69480]	halophile	no	69.057	no
[Ref.: #69480]	spore-forming	no	81.862	no
[Ref.: #69480]	glucose-util	yes	86.373	no
[Ref.: #69480]	thermophile	no	96.204	yes
[Ref.: #69480]	glucose-ferment	yes	57.079	no

Availability in culture collections External links

[Ref.: #7185]

Culture collection no.

DSM 17781, ATCC BAA-1285, SIP 1

[Ref.: #83482]

SI-ID 298296

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirochaeta cellobiosiphila sp. nov., a facultatively anaerobic, marine spirochaete.	Breznak JA, Warnecke F	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/001263-0	2008	*

References

#7185

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17781

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31205

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27532 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83482

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID298296.1 )

#27532

IJSEM 2762 2008 ( DOI 10.1099/ijs.0.2008/001263-0 , PubMed 19060054 )

* These data were automatically processed and therefore are not curated

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Spirochaeta cellobiosiphila DSM 17781 DSM 17781

Spirochaeta cellobiosiphila DSM 17781 DSM 17781

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