Arcobacter cryaerophilus CCUG 17802 is a microaerophile prokaryote that was isolated from Bovine fetus,aborted.
microaerophile genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Epsilonproteobacteria |
| Order Campylobacterales |
| Family Arcobacteraceae |
| Genus Arcobacter |
| Species Arcobacter cryaerophilus |
| Full scientific name Arcobacter cryaerophilus (Neill et al. 1985) Vandamme et al. 1991 |
| Synonyms (4) |
| BacDive ID | Other strains from Arcobacter cryaerophilus (5) | Type strain |
|---|---|---|
| 2091 | A. cryaerophilus A169/B, 02766, DSM 7289, ATCC 43158, CCUG ... (type strain) | |
| 142355 | A. cryaerophilus CCUG 12018, LMG 6622 | |
| 142356 | A. cryaerophilus CCUG 12020, LMG 9066 | |
| 143215 | A. cryaerophilus CCUG 17803, LMG 9862 | |
| 143216 | A. cryaerophilus CCUG 17807 |
| 46692 | Oxygen tolerancemicroaerophile |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125438 | 94.535 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 68373 | 16947 ChEBI | citrate | - | assimilation | from API CAM |
| 68373 | 17634 ChEBI | D-glucose | - | assimilation | from API CAM |
| 68380 | 16024 ChEBI | D-mannose | + | fermentation | from API rID32A |
| 68373 | 606565 ChEBI | hippurate | - | hydrolysis | from API CAM |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68373 | 25115 ChEBI | malate | - | assimilation | from API CAM |
| 68373 | 17632 ChEBI | nitrate | - | reduction | from API CAM |
| 68380 | 17632 ChEBI | nitrate | - | reduction | from API rID32A |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68373 | 30031 ChEBI | succinate | - | assimilation | from API CAM |
| 68373 | 78019 ChEBI | triphenyltetrazolium chloride | - | reduction | from API CAM |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68373 | 16199 ChEBI | urea | - | hydrolysis | from API CAM |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| @ref | Chebi-ID | Metabolite | Indole test | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | - | from API rID32A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68380 | alanine arylamidase | - | 3.4.11.2 | from API rID32A |
| 68373 | alkaline phosphatase | + | 3.1.3.1 | from API CAM |
| 68380 | alkaline phosphatase | - | 3.1.3.1 | from API rID32A |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68380 | alpha-glucosidase | - | 3.2.1.20 | from API rID32A |
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68380 | beta-galactosidase | - | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68373 | catalase | + | 1.11.1.6 | from API CAM |
| 68373 | esterase | + | from API CAM | |
| 68373 | gamma-glutamyltransferase | - | 2.3.2.2 | from API CAM |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | - | from API rID32A | |
| 68380 | histidine arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | - | from API rID32A | |
| 68373 | L-arginine arylamidase | - | from API CAM | |
| 68373 | L-aspartate arylamidase | - | 3.4.11.21 | from API CAM |
| 68380 | leucine arylamidase | + | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68380 | phenylalanine arylamidase | - | from API rID32A | |
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API CAM |
| 68380 | serine arylamidase | - | from API rID32A | |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | tyrosine arylamidase | - | from API rID32A | |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| 68373 | urease | - | 3.5.1.5 | from API CAM |
| @ref | URE | Reduction of nitrateNIT | EsteraseEST | HIP | GGT | TTC | PYRA | L-arginine arylamidaseArgA | L-aspartic acid arylamidaseAspA | PAL | H2S productionH2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | Erythromycin resistance (+) sensitivity (-)ERO | CAT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46692 | - | - | + | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | - | - | + | |
| 46692 | - | - | + | - | - | - | - | - | - | + | - | - | - | - | - | - | + | - | - | - | not determinedn.d. |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) | |
| #Host Body Product | #Urogenital tract | #Abort |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 46692 | Bovine fetus,aborted | Northern Ireland | United Kingdom | GBR | Europe |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM299306v1 assembly for Aliarcobacter cryaerophilus LMG 9861 | contig | 28198 | 72.18 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Arcobacter cryaerophilus isolate CCUG 17802 16S ribosomal RNA gene, partial sequence. | AY314755 | 1441 | 28198 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 87.20 | no |
| 125439 | motility | BacteriaNetⓘ | no | 53.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 97.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 88.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 96.81 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 73.42 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 94.54 | no |
| 125438 | aerobic | aerobicⓘ | no | 78.92 | no |
| 125438 | thermophilic | thermophileⓘ | no | 89.47 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 73.18 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Arcobacter-specific and Arcobacter butzleri-specific 16S rRNA-based DNA probes. | Wesley IV, Schroeder-Tucker L, Baetz AL, Dewhirst FE, Paster BJ. | J Clin Microbiol | 10.1128/jcm.33.7.1691-1698.1995 | 1995 | ||
| A Polyphasic and Taxogenomic Evaluation Uncovers Arcobacter cryaerophilus as a Species Complex That Embraces Four Genomovars. | Perez-Cataluna A, Collado L, Salgado O, Lefinanco V, Figueras MJ. | Front Microbiol | 10.3389/fmicb.2018.00805 | 2018 | ||
| Genetics | Genomic Analysis and Antimicrobial Resistance of Aliarcobacter cryaerophilus Strains From German Water Poultry. | Muller E, Hotzel H, Ahlers C, Hanel I, Tomaso H, Abdel-Glil MY. | Front Microbiol | 10.3389/fmicb.2020.01549 | 2020 | |
| Phylogeny | Updated 16S rRNA-RFLP method for the identification of all currently characterised Arcobacter spp. | Figueras MJ, Levican A, Collado L. | BMC Microbiol | 10.1186/1471-2180-12-292 | 2012 | |
| Assessment of the genetic diversity among arcobacters isolated from poultry products by using two PCR-based typing methods. | Houf K, De Zutter L, Van Hoof J, Vandamme P. | Appl Environ Microbiol | 10.1128/aem.68.5.2172-2178.2002 | 2002 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #46692 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 17802 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68373 | Automatically annotated from API CAM . |
| #68380 | Automatically annotated from API rID32A . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive143214.20251217.10
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