Name: Parasphingorhabdus flavimaris SW-151
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14279

Type strain:

Species: Parasphingorhabdus flavimaris

Strain Designation: SW-151

Culture col. no.: DSM 16223, KCTC 12232

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 266812 (species)

SI-ID 135125

DSM 16223, KCTC 12232

Special Collections

DSMZ
KCTC

Section

Parasphingorhabdus flavimaris SW-151 is an aerobe, Gram-negative bacterium that was isolated from sea water.

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Parasphingorhabdus*
	Species	**Parasphingorhabdus flavimaris**
	Full Scientific Name (LPSN)	Parasphingorhabdus flavimaris (Yoon and Oh 2005) Feng et al. 2020

	Synonym	Sphingopyxis flavimaris
	Synonym	Sphingorhabdus flavimaris

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.463

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6338]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #6338]

Culture medium growth

[Ref.: #6338]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6338]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6338]			growth	30 °C
[Ref.: #67771]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67771]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6338]	Sample type/isolated from	sea water
[Ref.: #6338]	Geographic location (country and/or sea, region)	Yellow Sea, Baekryung Island
[Ref.: #6338]	Country	Republic of Korea
[Ref.: #6338]	Country ISO 3 Code	KOR
[Ref.: #6338]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	the west sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY554010 (>99% sequence identity) for Sphingomonadaceae from Microbeatlas

Aquatic Samples	6142
Soil Samples	436
Animal Samples	308
Plant Samples	145
Total Samples	7031

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6338]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6338]	Sphingopyxis flavimaris strain SW-151 16S ribosomal RNA gene, partial sequence	AY554010	1444	GenBank ENA	266812 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Parasphingorhabdus flavimaris SW-151	GCA_013371215	contig	GenBank ENA	266812 tax ID	*
[Ref.: #66792]	Parasphingorhabdus flavimaris strain SW-151	266812.13	wgs	PATRIC	266812 tax ID	*

[Ref.: #6338]	GC-content	57.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	58.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Parasphingorhabdus flavimaris strain SW-151 PATRIC: 266812.8
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Parasphingorhabdus flavimaris strain SW-151 PATRIC: 266812.13
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.463	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.04	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.649	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.478	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.057	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	62.699	no

Availability in culture collections External links

[Ref.: #6338]

Culture collection no.

DSM 16223, KCTC 12232

[Ref.: #83434]

SI-ID 135125

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parasphingorhabdus halotolerans sp. nov. isolated from marine sediment in Jeju Island.	Kim SJ, Kim M, Lee KE, Cha IT, Park SJ	Arch Microbiol	10.1007/s00203-021-02366-8	2021	*

References

#6338

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16223

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83434

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID135125.1 )

* These data were automatically processed and therefore are not curated

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Parasphingorhabdus flavimaris strain SW-151

Parasphingorhabdus flavimaris strain SW-151

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