Parasphingorhabdus flavimaris (DSM 16223, KCTC 12232, SW-151)

Name: Parasphingorhabdus flavimaris (DSM 16223, KCTC 12232, SW-151)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14279

Type strain

Strain Designation SW-151

Culture col. no. DSM 16223 KCTC 12232 SW-151

NCBI tax ID(s) 266812

Special Collections DSMZ KCTC

History DSMZ <- J.-H. Yoon; SW-151 KCTC <- JH Yoon, KRIBB

Links

Parasphingorhabdus flavimaris SW-151 is an aerobe, Gram-negative bacterium that was isolated from sea water.

Gram-negative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 135125

DSM 16223,KCTC 12232

@ref 20215

Last LPSN update 2026-05-29 08:28:15

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Parasphingorhabdus

Species Parasphingorhabdus flavimaris

Full scientific name Parasphingorhabdus flavimaris (Yoon and Oh 2005) Feng et al. 2020

Synonyms (2)

Sphingorhabdus flavimaris
Sphingopyxis flavimaris

Morphology

Cell morphology

@ref	Gram stain	Confidence
67771	negative
125438	negative	96.463
125439	negative	95.972

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6338	REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6338	positive	growth	30
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	aerobe	97.456

Spore formation

@ref	Spore formation	Confidence
125439		94.63

Observation

67771

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6338	sea water	Yellow Sea, Baekryung Island	Republic of Korea	KOR	Asia
67771	From seawater	the west sea	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY554010 (>99% sequence identity) for Sphingomonadaceae from Microbeatlas

Aquatic Samples	6142
Soil Samples	436
Animal Samples	308
Plant Samples	145
Total Samples	7031

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6338	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1337121v1 assembly for Parasphingorhabdus flavimaris SW-151	contig	GCA_013371215	266812.13	2994957543	266812	77.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6338	Sphingopyxis flavimaris strain SW-151 16S ribosomal RNA gene, partial sequence	AY554010	1444		266812

GC content

@ref	GC-content (mol%)	Method
6338	57.8	high performance liquid chromatography (HPLC)
67771	58.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1337121v1 assembly for Parasphingorhabdus flavimaris SW-151
NCBI: GCA_013371215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.46	no
125439	gram_stain	BacteriaNetⓘ	negative	95.97	no
125439	spore_formation	BacteriaNetⓘ	no	94.63	no
125439	motility	BacteriaNetⓘ	yes	53.46	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Parasphingorhabdus flavimaris strain SW-151
PATRIC: 266812.13

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.46	no
125438	anaerobic	anaerobicⓘ	no	93.04	no
125438	spore-forming	spore-formingⓘ	no	87.65	no
125438	aerobic	aerobicⓘ	yes	86.48	yes
125438	thermophilic	thermophileⓘ	no	96.06	yes
125438	flagellated	motile2+ⓘ	yes	62.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parasphingorhabdus halotolerans sp. nov. isolated from marine sediment in Jeju Island.	Kim SJ, Kim M, Lee KE, Cha IT, Park SJ	Arch Microbiol	10.1007/s00203-021-02366-8	2021

References

#6338	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16223
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Parasphingorhabdus flavimaris (DSM 16223, KCTC 12232, SW-151)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013371215

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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