Sphingomonas pseudosanguinis (DSM 19512, CCUG 54232, CIP 109431)

Name: Sphingomonas pseudosanguinis (DSM 19512, CCUG 54232, CIP 109431)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14250

Type strain

Strain Designation G1-2

Culture col. no. DSM 19512 CCUG 54232 CIP 109431 G1-2

NCBI tax ID(s) 413712

Special Collections DSMZ CCUG CIP Literature strains

History DSMZ <- P. Kaempfer, Univ. Giessen; G1-2 CIP <- 2006, P. Kämpfer, Giessen Univ., Giessen, Germany: strain G1-2, "Sphingomonas intermedia"

Links

Sphingomonas pseudosanguinis G1-2 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from surface of air humidifier.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309503

DSM 19512,CCUG 54232,CIP 109431

@ref 20215

Last LPSN update 2026-05-29 08:28:14

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas pseudosanguinis

Full scientific name Sphingomonas pseudosanguinis Kämpfer et al. 2007

BacDive ID	Other strains from **Sphingomonas pseudosanguinis** (2)	Type strain
132867	S. pseudosanguinis CBAS-MD 134, BRR J3604, DSM 27516
132868	S. pseudosanguinis CBAS-MD 137, BRRJ 3531, DSM 27517

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32087	negative	0.8-1.5 µm	0.4-0.6 µm	rod-shaped
125439	negative				94.443
125438	negative				96.372
122000	negative			rod-shaped

Colony morphology

@ref	Incubation period	Hemolysis ability
60113	1 day
122000		0

Pigmentation

32087

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8141	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40732	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122000	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8141	positive	growth	28
40732	positive	growth	30
60113	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60113	aerobe
122000	facultative anaerobe
125439	obligate aerobe	97.933

Spore formation

@ref	Spore formation	Confidence
125439		98.278

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32087	37054 ChEBI	3-hydroxybutyrate	+	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
32087	16449 ChEBI	alanine	+	carbon source
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
32087	22599 ChEBI	arabinose	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
32087	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
32087	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	+	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
32087	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
32087	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
32087	28260 ChEBI	galactose	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
32087	17234 ChEBI	glucose	+	carbon source
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
32087	25017 ChEBI	leucine	+	carbon source
32087	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
32087	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
32087	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
122000	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
122000	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
32087	26271 ChEBI	proline	+	carbon source
32087	15361 ChEBI	pyruvate	+	carbon source
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
32087	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
32087	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
32087	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
122000	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122000	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122000	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
122000	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122000	-	+	+	+	-	+	+	-	-	+	+	+	-	+	-	+	+	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
8141	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	+	+	-	+
8141	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	+	+	-	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122000	not determinedn.d.	+/-	-	-	+	-	+	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+/-	+	+/-	+	+	+	+/-	+	+	-	-	-	+/-	-	-	+	+/-	-	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Air conditioner

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8141	surface of air humidifier		Germany	DEU	Europe
60113	Air humidifier	Solingen	Germany	DEU	Europe
122000	Environment, Water reservoir, air humidifier	Hilden	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AM412238 (>99% sequence identity) for Sphingomonas from Microbeatlas

Aquatic Samples	518
Soil Samples	167
Animal Samples	1394
Plant Samples	394
Total Samples	2473

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8141	1	Risk group (German classification) According to TRBA 466
122000	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1419625v1 assembly for Sphingomonas pseudosanguinis DSM 19512	contig	GCA_014196255	413712.3	2829843910	413712	69.71
66792	ASM1705235v1 assembly for Sphingomonas pseudosanguinis DSM 19512	scaffold	GCA_017052355	413712.4	8114394261	413712	56.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8141	Sphingomonas pseudosanguinis partial 16S rRNA gene, type strain G1-2T	AM412238	1387		413712

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1419625v1 assembly for Sphingomonas pseudosanguinis DSM 19512
BV-BRC: 413712.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.93	no
125439	gram_stain	BacteriaNetⓘ	negative	94.44	no
125439	motility	BacteriaNetⓘ	yes	51.61	no
125439	spore_formation	BacteriaNetⓘ	no	98.28	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingomonas pseudosanguinis DSM 19512
NCBI: GCA_017052355.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.37	no
125438	anaerobic	anaerobicⓘ	no	94.65	yes
125438	aerobic	aerobicⓘ	yes	86.83	no
125438	spore-forming	spore-formingⓘ	no	89.22	no
125438	thermophilic	thermophileⓘ	no	97.67	no
125438	flagellated	motile2+ⓘ	yes	73.47	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of vB_StuS_MMDA13, a Newly Discovered Bacteriophage Infecting the Agar-Degrading Species Sphingomonas turrisvirgatae.	Marmo P, Thaller MC, Di Lallo G, Henrici De Angelis L, Poerio N, De Santis F, Fraziano M, Migliore L, D'Andrea MM.	Viruses	10.3390/v12080894	2020
Phylogeny	Sphingomonas aeria sp. nov., isolated from air.	Xue H, Piao CG, Wang XZ, Lin CL, Guo MW, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002910	2018
Phylogeny	Sphingomonas aeria sp. nov. from indoor air of a pharmaceutical environment.	Park HK, Han JH, Kim TS, Joung Y, Cho SH, Kwon SW, Kim SB	Antonie Van Leeuwenhoek	10.1007/s10482-014-0302-5	2014
Phylogeny	Sphingomonas pseudosanguinis sp. nov., isolated from the water reservoir of an air humidifier.	Kampfer P, Meurer U, Esser M, Hirsch T, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64942-0	2007

References

#8141	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19512
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28333	IJSEM 1342 2007 ( DOI 10.1099/ijs.0.64942-0 , PubMed 17551055 )
#32087	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28333
#40732	; Curators of the CIP;
#60113	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54232
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122000	Collection of Institut Pasteur ; Curators of the CIP; CIP 109431
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingomonas pseudosanguinis (DSM 19512, CCUG 54232, CIP 109431)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014196255

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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